BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00000555
         (5102 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prun...  1311   0.0  
ref|XP_007207232.1| hypothetical protein PRUPE_ppa026856mg [Prun...  1289   0.0  
emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]  1280   0.0  
ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [The...  1280   0.0  
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                1271   0.0  
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]                1263   0.0  
ref|XP_007220740.1| hypothetical protein PRUPE_ppa023598mg [Prun...  1216   0.0  
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...  1216   0.0  
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                        1204   0.0  
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]    1191   0.0  
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...  1188   0.0  
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...  1188   0.0  
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...  1182   0.0  
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]      1179   0.0  
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...  1165   0.0  
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                 1164   0.0  
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                 1160   0.0  
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]             1151   0.0  
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...  1116   0.0  
ref|XP_007221295.1| hypothetical protein PRUPE_ppa024499mg, part...  1042   0.0  

>ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prunus persica]
            gi|462405925|gb|EMJ11389.1| hypothetical protein
            PRUPE_ppa017790mg [Prunus persica]
          Length = 1485

 Score = 1311 bits (3394), Expect = 0.0
 Identities = 658/1379 (47%), Positives = 908/1379 (65%), Gaps = 39/1379 (2%)
 Frame = -2

Query: 5092 EFKEVPENKRVPLVATRLRGRASAWWKQLKITRERRGKQKVTQWDDMRKKMREEFLPYNY 4913
            +  EVPE+K V +VA RL+  A+ WW QL+  R+R+GKQ+V  W  M+  M E+FLP +Y
Sbjct: 132  DIMEVPEHKMVKMVAFRLKATAAVWWDQLQNLRQRQGKQRVRTWRKMKSLMMEQFLPTDY 191

Query: 4912 KRTLHQRLQNLKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQDFQDVLNMY 4733
            ++ L++      QGT S+ +YTEEF  L  R  L E+  + + RY  GLK   Q+ + M 
Sbjct: 192  EQILYRMYLGCAQGTHSVSEYTEEFMRLAERNHLTETDNQKVARYNNGLKISIQEKIGMQ 251

Query: 4732 DLWDVSDAHQRAL---LFEKQQQRSRFGQSMIRSFP-------------------SARTQ 4619
            ++W + +A   AL   L EK++++  F ++   +                     S    
Sbjct: 252  NIWTLQEAINMALKAELLEKEKRQPNFRRNTTEASDYTAGASSGAGDKGKAQQQSSGGMT 311

Query: 4618 KPTTSGAPTAPIAPKASHPVPSPQISNATNSLR-------CFKCNEPGHRASHCPRNSGR 4460
            KPTT G         +S      Q  N + +L        C++C +PGHR++ CP     
Sbjct: 312  KPTTVGQ-NKNFNEGSSRNYNRGQPRNQSQNLYAKPMTDICYRCQKPGHRSNVCPELKQA 370

Query: 4459 SGKQLLIEEADAELDQNESPIXXXXXXXXXXXEVAGDVGEALVIRKSLFTPRDQSESDWL 4280
            +     IEEAD + + +E  +              G     LV+++ L  PR++ +    
Sbjct: 371  N----FIEEADEDEENDE--VGENDYAGAEFAVEEGMEKITLVLQRVLLAPREEGQ---- 420

Query: 4279 RTNIFRTTCTVEGKICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLSWFKKGGEVS 4100
            R +IFR+ C+++ K+C +I+D+GSCENF+S++ V  LQL  EPH  PY+L W KKG  V 
Sbjct: 421  RHSIFRSLCSIKNKVCDVIVDNGSCENFVSKKLVEYLQLSTEPHVSPYSLGWVKKGPSVR 480

Query: 4099 VNKRCVVSFSIGKTYKDQVWCDVVPLEACHILLGRPWQYDKDVSHNGRRNTYSFIHNKVK 3920
            V + C V  SIGK Y+D+V CDV+ ++ACHILLGRPWQ+D D +  GR N   F  N  K
Sbjct: 481  VAETCRVPLSIGKHYRDEVLCDVIDMDACHILLGRPWQFDVDATFKGRDNVILFSWNNRK 540

Query: 3919 ITLV---PSK-ELGLKPHSGDNTQLLSLHQ-FDKAIHD-EGIVYMLVSCDKSTEKPIPVA 3758
            I +    PSK  + +K  S     L+S  Q  ++A+ + EG            E  IP  
Sbjct: 541  IAMTTTQPSKPSVEVKTRSSSFLTLISNEQELNEAVKEAEG------------EGDIPQD 588

Query: 3757 VKPLLAEFSDIFPEELPYGLPPLRDIQHQIDLVPGSILPNRPHYRMSPKEHKELAKQVNE 3578
            V+ +L++F ++F E LP  LPP+RDIQH+IDLVPG+ L N PHYRMSPKE+  L +Q+ E
Sbjct: 589  VQQILSQFQELFSENLPNELPPMRDIQHRIDLVPGASLQNLPHYRMSPKENDILREQIEE 648

Query: 3577 LIGKGYIRESISPCGVPALLTPKKDGTWRMCVDSRAINKITIKYRFPIPRLDDMLDNLCG 3398
            L+ KG+IRES+SPC VP LL PKKD TWRMCVDSRAINKIT+KYRFPIPRL+DMLD L G
Sbjct: 649  LLRKGFIRESLSPCAVPVLLVPKKDKTWRMCVDSRAINKITVKYRFPIPRLEDMLDVLSG 708

Query: 3397 ATTFSKLDLKSGYHQIRVRPGDEWKTAFKTKEGLYEWMVMPFGLSNAPSTFMRVMNQILK 3218
            +  FSK+DL+SGYHQIR+RPGDEWKTAFK+K+GL+EW+VMPFGLSN PSTFMR+MNQ+L+
Sbjct: 709  SKVFSKIDLRSGYHQIRIRPGDEWKTAFKSKDGLFEWLVMPFGLSNTPSTFMRLMNQVLR 768

Query: 3217 PFIGKFVVVYFDDILVYSVNASLHMQHLREVLIVLRREKMYAQMKKCEFMSPEVLFLGYI 3038
            PFIG FVVVYFDDIL+YS     H+ HLR+VL VLR  K++  +KKC F + ++LFLG++
Sbjct: 769  PFIGSFVVVYFDDILIYSTTKEEHLVHLRQVLDVLRENKLFVNLKKCTFCTNKLLFLGFV 828

Query: 3037 ITGEGIKVDDSKIQAIVEWPQPTTITEARSFHGLASFYRRFIHHFSTIMAPITNCMKKIK 2858
            +   GI+VDD KI+AI++WP P T++E RSFHGLA+FYRRF+ HFS+I+APIT C+KK +
Sbjct: 829  VGEHGIQVDDEKIKAILDWPAPKTVSEVRSFHGLATFYRRFVRHFSSIVAPITECLKKGR 888

Query: 2857 FEWTREAENCFQEIKARLTVAPILALPNFELLFEVHCDASKLGIGAVLSQEGRPVAYYSE 2678
            F W  E E  F +IK +L  AP+LALPNFE +FEV CDAS +G+GAVLSQ+ RPVA++SE
Sbjct: 889  FSWGEEQERSFADIKEKLCTAPVLALPNFEKVFEVECDASGVGVGAVLSQDKRPVAFFSE 948

Query: 2677 KFHGPQLRYSTYDMEFLAVVQTLKHWRHYLIHRDFVLYSDHEALKHLNSQQKLSSRHAKW 2498
            K    + ++STYD EF AVV+ LK W HYLI ++FVL++DH+ALK++NSQ+ +   HA+W
Sbjct: 949  KLSDARQKWSTYDQEFYAVVRALKQWEHYLIQKEFVLFTDHQALKYINSQKNIDKMHARW 1008

Query: 2497 AAYIQEFTFSLKHKSGVQNRVADALSRRVSLLTQMHVQVPGFDTFSELYLEDVFFTKV-L 2321
              ++Q+F+F +KH SG  NRVADALSRR SLL  +  +V GF+   ELY  D  F ++  
Sbjct: 1009 VTFLQKFSFVIKHTSGKTNRVADALSRRASLLITLTQEVVGFECLKELYEGDADFGEIWT 1068

Query: 2320 KELKENHQCPYIMSNGFLFKGNQLCLPDCSLRQQVIKELHA---EGHFGQKKTFQLVSKT 2150
            K   +     Y ++ G+LFKGNQLC+P  SLR+++I++LH     GH G+ KT   + + 
Sbjct: 1069 KCTNQEPMADYFLNEGYLFKGNQLCIPVSSLREKLIRDLHGGGLSGHLGRDKTIAGMEER 1128

Query: 2149 YFWPSMRKDIDKYVARCYICQRGKGATSNAGLYMPLPIPQAPWTDVTMDFILGLPRTQRG 1970
            ++WP +++D+   V +CY CQ  KG   N GLYMPLP+P   W D+ MDF+LGLPRTQRG
Sbjct: 1129 FYWPQLKRDVGTIVRKCYTCQTSKGQVQNTGLYMPLPVPNDIWQDLAMDFVLGLPRTQRG 1188

Query: 1969 MDSIFVIVDRFSKMAHFVACRKTMDATHIAGLYFKEIVRLHGIPKSITSDRDSKFVSHFW 1790
            +DS+FV+VDRFSKMAHF+ACRKT DA++IA L+F+E+VRLHG+P SITSDRD+KF+SHFW
Sbjct: 1189 VDSVFVVVDRFSKMAHFIACRKTADASNIAKLFFREVVRLHGVPTSITSDRDTKFLSHFW 1248

Query: 1789 RTLWKLLGTSLQFSSAYHPQTDGQTEVVNRSLGNLLRCLVGNQPRKWDQALSQAEFAFNR 1610
             TLW+L GT+L  SS  HPQTDGQTEV NR+LGN++R + G +P++WD AL Q EFA+N 
Sbjct: 1249 ITLWRLFGTTLNRSSTAHPQTDGQTEVTNRTLGNMVRSVCGEKPKQWDYALPQVEFAYNS 1308

Query: 1609 STNRTTGFSPFEVIYGQNPQTALDLIPISNVGKTDKKVEELISNLQQIQTQVKSQLEESI 1430
            + +  TG SPF ++Y   P   +DL+ +    +T    + L   +  ++ +VK +LE++ 
Sbjct: 1309 AVHSATGKSPFSIVYTAMPNHVVDLVKLPRGQQTSVAAKNLAEEVVAVRDEVKQKLEQTN 1368

Query: 1429 AKYKEQADQKRRKVVFDAGDFVWATFTKDRHPYGEFNKLSPRKMGPFEIAEKINENAYRL 1250
            AKYK  AD+ RR  VF  GD V     K+R P G ++KL P+K GP+++ ++IN+NAY +
Sbjct: 1369 AKYKAAADKHRRVKVFQEGDSVMIFLRKERFPVGTYSKLKPKKYGPYKVLKRINDNAYVI 1428

Query: 1249 KLPSHIRTHEVFNVKHLTPYHGNEGDGEENSRTNSFYPGEDDVHQLADSYLDKLEKSKA 1073
            +LP  +    +FNV  L  +  +E +G              DV Q+AD    +LEK ++
Sbjct: 1429 ELPDSMGISNIFNVADLYEFREDEVEG-------------TDVEQMADFIAVELEKGRS 1474


>ref|XP_007207232.1| hypothetical protein PRUPE_ppa026856mg [Prunus persica]
            gi|462402874|gb|EMJ08431.1| hypothetical protein
            PRUPE_ppa026856mg [Prunus persica]
          Length = 1493

 Score = 1289 bits (3335), Expect = 0.0
 Identities = 643/1376 (46%), Positives = 896/1376 (65%), Gaps = 36/1376 (2%)
 Frame = -2

Query: 5092 EFKEVPENKRVPLVATRLRGRASAWWKQLKITRERRGKQKVTQWDDMRKKMREEFLPYNY 4913
            +  EVPE+K V +VA RL+  A+ WW QL+  R+R+GKQ+V  W  M+  M E FLP +Y
Sbjct: 143  DIMEVPEHKMVKMVAFRLKATAAVWWDQLQNLRQRQGKQRVRTWRKMKSLMMERFLPTDY 202

Query: 4912 KRTLHQRLQNLKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQDFQDVLNMY 4733
            ++ L++      QGTRS+ +YTEEF  L  R  L E+  + + RY  GLK   Q+ + M 
Sbjct: 203  EQILYRMYLGCAQGTRSVSEYTEEFMRLAERNHLTETDNQKVARYNNGLKSSIQEKIGMQ 262

Query: 4732 DLWDVSDAHQRAL---LFEKQQQRSRFGQSMIRSFP----------SARTQKPTTSGAPT 4592
            ++W + +A   AL   L EK++++  F ++   +                 +   SG  T
Sbjct: 263  NIWTLQEAINMALKAELLEKEKRQPNFRRNKTEASDYTAGASSGAGDKEKAQQQNSGGMT 322

Query: 4591 API------------APKASHPVPSPQISNATNSLR---CFKCNEPGHRASHCPRNSGRS 4457
             P             +   +   P  Q  N         C++C +PGHR++ CP     +
Sbjct: 323  KPATVGQNKNFNEGSSRNYNRGQPRNQSQNPYAKPMTDICYRCQKPGHRSNVCPERKQAN 382

Query: 4456 GKQLLIEEADAELDQNESPIXXXXXXXXXXXEVAGDVGEALVIRKSLFTPRDQSESDWLR 4277
                 IEEAD + +++E  +              G     LV+++ L  P+++ +    R
Sbjct: 383  ----FIEEADEDEEKDE--VGENDYAGAEFAVEEGIEKITLVLQRVLLAPKEEGQ----R 432

Query: 4276 TNIFRTTCTVEGKICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLSWFKKGGEVSV 4097
             NIFR+ C+++ K+C +I+D+GSCENF+S++ V  LQL  EPH  PY+L W KKG  V V
Sbjct: 433  HNIFRSLCSIKNKVCDVIVDNGSCENFVSKKLVEYLQLSTEPHVSPYSLGWVKKGPSVRV 492

Query: 4096 NKRCVVSFSIGKTYKDQVWCDVVPLEACHILLGRPWQYDKDVSHNGRRNTYSFIHNKVKI 3917
             + C V  SIGK Y+D V CDV+ ++ACHILLGRPWQ+D D +  GR N   F  N  KI
Sbjct: 493  AETCRVPLSIGKHYRDDVLCDVIDMDACHILLGRPWQFDVDATFKGRDNVILFSWNNRKI 552

Query: 3916 TLV---PSKELGLKPHSGDNTQLLSLHQFDKAIHD-EGIVYMLVSCDKSTEKPIPVAVKP 3749
             +    PS++  L+  S   T + +  + ++A+ + EG            E  IP  V+ 
Sbjct: 553  AMATTQPSRKQELRS-SSFLTLISNEQELNEAVKEAEG------------EGDIPQDVQQ 599

Query: 3748 LLAEFSDIFPEELPYGLPPLRDIQHQIDLVPGSILPNRPHYRMSPKEHKELAKQVNELIG 3569
            +L++F ++  E LP  LPP+RDIQH+IDLV G+ LPN PHYRMSPKE+  L +Q+ EL+ 
Sbjct: 600  ILSQFQELLSENLPNELPPMRDIQHRIDLVHGASLPNLPHYRMSPKENDILREQIEELLR 659

Query: 3568 KGYIRESISPCGVPALLTPKKDGTWRMCVDSRAINKITIKYRFPIPRLDDMLDNLCGATT 3389
            KG+IRES+SPC VP LL PKKD TWRMCVDSRA+NKI +KYRF IPRL+D+LD L G+  
Sbjct: 660  KGFIRESLSPCAVPVLLVPKKDKTWRMCVDSRAVNKIKVKYRFSIPRLEDILDVLSGSKV 719

Query: 3388 FSKLDLKSGYHQIRVRPGDEWKTAFKTKEGLYEWMVMPFGLSNAPSTFMRVMNQILKPFI 3209
            FSK+DL+SGYHQIR+RPGDEWKTAFK+K+GL+EW+VMPFGLSNAPSTFMR+MNQ+L+PFI
Sbjct: 720  FSKIDLRSGYHQIRIRPGDEWKTAFKSKDGLFEWLVMPFGLSNAPSTFMRLMNQVLRPFI 779

Query: 3208 GKFVVVYFDDILVYSVNASLHMQHLREVLIVLRREKMYAQMKKCEFMSPEVLFLGYIITG 3029
            G FVVVYFDDIL+YS     H+ HLR+VL VLR  K+Y  +KKC F + ++LFLG+++  
Sbjct: 780  GSFVVVYFDDILIYSTTKEEHLVHLRQVLDVLRENKLYVNLKKCTFCTNKLLFLGFVVGE 839

Query: 3028 EGIKVDDSKIQAIVEWPQPTTITEARSFHGLASFYRRFIHHFSTIMAPITNCMKKIKFEW 2849
             GI+VDD KI+AI++WP P T++E RSFHGLA+FY RF+ HFS+I APIT C+KK +F W
Sbjct: 840  NGIQVDDEKIKAILDWPAPKTVSEVRSFHGLATFYMRFVRHFSSIAAPITECLKKGRFSW 899

Query: 2848 TREAENCFQEIKARLTVAPILALPNFELLFEVHCDASKLGIGAVLSQEGRPVAYYSEKFH 2669
              E E  F +IK +L  AP+LALPNFE +FEV CDAS +G+GAVL Q+ RPVA++SEK  
Sbjct: 900  GEEQERSFADIKEKLCTAPVLALPNFEKVFEVECDASGVGVGAVLLQDKRPVAFFSEKLS 959

Query: 2668 GPQLRYSTYDMEFLAVVQTLKHWRHYLIHRDFVLYSDHEALKHLNSQQKLSSRHAKWAAY 2489
              + ++STYD EF AVV+ LK W HYLI ++FVL++DH+ALK++NSQ+ +   HA+W  +
Sbjct: 960  DARQKWSTYDQEFYAVVRALKQWEHYLIQKEFVLFTDHQALKYINSQKNIDKMHARWVTF 1019

Query: 2488 IQEFTFSLKHKSGVQNRVADALSRRVSLLTQMHVQVPGFDTFSELYLEDVFFTKV-LKEL 2312
            +Q+F+F +KH SG  NRVADALSRR SLL  +  +V GF+   ELY  D  F ++  K  
Sbjct: 1020 LQKFSFVIKHTSGKTNRVADALSRRASLLITLTQEVVGFECLKELYEGDDDFREIWTKCT 1079

Query: 2311 KENHQCPYIMSNGFLFKGNQLCLPDCSLRQQVIKELHA---EGHFGQKKTFQLVSKTYFW 2141
             +     Y ++ G+LFKGNQLC+P  SLR+++I++LH     GH G+ KT   + + ++W
Sbjct: 1080 NQEPMTDYFLTEGYLFKGNQLCIPVSSLREKLIRDLHGGGLSGHLGRDKTIAGMEERFYW 1139

Query: 2140 PSMRKDIDKYVARCYICQRGKGATSNAGLYMPLPIPQAPWTDVTMDFILGLPRTQRGMDS 1961
            P +++D+   V +CY CQ  KG   N GLYMPLP+P   W D+ MDF+LG PRTQR +DS
Sbjct: 1140 PQLKRDVGTIVRKCYTCQTSKGQVQNTGLYMPLPVPNDIWQDLAMDFVLGFPRTQRRVDS 1199

Query: 1960 IFVIVDRFSKMAHFVACRKTMDATHIAGLYFKEIVRLHGIPKSITSDRDSKFVSHFWRTL 1781
            +FV+ DRFSKMAHF+AC+KT DA++IA L+F+E+VRLHG+P SITSDRD+KF+SHFW TL
Sbjct: 1200 VFVVADRFSKMAHFIACKKTADASNIAKLFFREVVRLHGVPTSITSDRDTKFLSHFWITL 1259

Query: 1780 WKLLGTSLQFSSAYHPQTDGQTEVVNRSLGNLLRCLVGNQPRKWDQALSQAEFAFNRSTN 1601
            W+L GT+L  SS  HPQTDGQTEV NR+LGN++R + G +P++WD AL Q EFA+N + +
Sbjct: 1260 WRLFGTTLNRSSTAHPQTDGQTEVTNRTLGNMVRSVCGEKPKQWDYALPQMEFAYNSAVH 1319

Query: 1600 RTTGFSPFEVIYGQNPQTALDLIPISNVGKTDKKVEELISNLQQIQTQVKSQLEESIAKY 1421
              TG SPF ++Y   P   +DL+ +    +T    + L   +  ++ +VK +LE++ AKY
Sbjct: 1320 SATGKSPFSIVYTATPNHVVDLVKLPRGQQTSVAAKNLAEEVVAVRDEVKQKLEQTNAKY 1379

Query: 1420 KEQADQKRRKVVFDAGDFVWATFTKDRHPYGEFNKLSPRKMGPFEIAEKINENAYRLKLP 1241
            K  AD+ RR  VF  GD V     K+R P G ++KL P+K GP+++ ++IN+NAY ++LP
Sbjct: 1380 KAAADRHRRVKVFQEGDSVMVFLRKERFPAGTYSKLKPKKYGPYKVLKRINDNAYDIELP 1439

Query: 1240 SHIRTHEVFNVKHLTPYHGNEGDGEENSRTNSFYPGEDDVHQLADSYLDKLEKSKA 1073
              +    +FNV  L  +  +E +G              DV Q+ D    +LEK ++
Sbjct: 1440 DSMGISNIFNVADLYEFREDEVEG-------------TDVEQMTDFIAVELEKGRS 1482


>emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]
          Length = 1521

 Score = 1280 bits (3313), Expect = 0.0
 Identities = 648/1349 (48%), Positives = 883/1349 (65%), Gaps = 36/1349 (2%)
 Frame = -2

Query: 5101 EVLEFKEVPENKRVPLVATRLRGRASAWWKQLKITRERRGKQKVTQWDDMRKKMREEFLP 4922
            +  ++  +PEN++V  V  +L+G A  WW  ++    R G+  +  WD+M+ KM+E FLP
Sbjct: 113  DYFDWYAMPENRKVRFVKAKLKGAARLWWHNIENQAHRTGQPPIDTWDEMKLKMKEHFLP 172

Query: 4921 YNYKRTLHQRLQNLKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQDFQDVL 4742
             +Y++ ++ +L +LKQGT+S+ +YTEEF+ L  R ++ ES  +L  RY  GL+ + Q  +
Sbjct: 173  TDYEQLMYTKLFSLKQGTKSVEEYTEEFHELSIRNQVXESDAQLAARYKAGLRMEIQLEM 232

Query: 4741 NMYDLWDVSDAHQRALLFEK--QQQRSRFGQSMIRS-FPSARTQKP-TTSGAPTAPIAPK 4574
                 + V D +Q AL  E+  + + SR   S I S F +  T KP +TS   T+     
Sbjct: 233  IAAHTYTVDDVYQLALKIEEGLKFRVSRHPSSQIGSTFSNRTTSKPLSTSNFRTSIHVNG 292

Query: 4573 ASHPVPSPQISNAT-----NSLR-----------CFKCNEPGHRASHCPRNSGRSGKQLL 4442
              +  P+  +++       NS+            CFKC   GH A  CP      G    
Sbjct: 293  GDNTQPTSNVAHQNGNKGKNSMSNGDRKVDATPLCFKCGGHGHYAVVCPTK----GLHFC 348

Query: 4441 IEEADAELD---QNESPIXXXXXXXXXXXEVAGDVGEALVIRKSLFTPRDQSESDWLRTN 4271
            +EE ++EL+   + E                    G +LV+R  L  P+ + E DW R +
Sbjct: 349  VEEPESELESYLKKEETYNEDEVSEECDYYDGMTEGHSLVVRPLLTIPKVKGEEDWRRIS 408

Query: 4270 IFRTTCTVEGKICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLSWFKKGGEVSVNK 4091
            IF+T  +  G++C++IID GS  N  SQE V KL LK E HP P+ ++W      + V+ 
Sbjct: 409  IFQTRISCHGRLCTMIIDGGSSLNIASQELVEKLNLKTERHPNPFRVAWVNDTS-IPVSF 467

Query: 4090 RCVVSFSIGKTYKDQVWCDVVPLEACHILLGRPWQYDKDVSHNGRRNTYSFIHNKVKITL 3911
            RC+V+F  GK +++ VWC+V+P++  HILLGRPW +D+ V H+G  NTY+ IHN  K  L
Sbjct: 468  RCLVTFLFGKDFEESVWCEVLPIKVSHILLGRPWLFDRKVQHDGYENTYALIHNGRKKIL 527

Query: 3910 VPSKELGLKPHSGDNTQ---LLSLHQFDKAIHDEGIVYMLVSCD----KSTEKPIPVAVK 3752
             P KE+     S +N Q   +L++ QF+    +  +++ L++      K  +K  P   +
Sbjct: 528  RPMKEVPPIKKSNENAQPKKVLTMCQFENESKETXVIFALMARKVEEFKEQDKEYPANAR 587

Query: 3751 PLLAEFSDIFPEELPYGLPPLRDIQHQIDLVPGSILPNRPHYRMSPKEHKELAKQVNELI 3572
             +L +FSD++P ELP  LPP+RDIQH IDL+PG+ LPN P YRM+P EH EL +QV+EL+
Sbjct: 588  KILDDFSDLWPVELPNELPPMRDIQHAIDLIPGASLPNLPAYRMNPTEHAELKRQVDELL 647

Query: 3571 GKGYIRESISPCGVPALLTPKKDGTWRMCVDSRAINKITIKYRFPIPRLDDMLDNLCGAT 3392
             KG+IRES+SPCGVPALLTPKKDG+WRMCVDSRAINKITIKYRFPIPRLDDMLD + G+ 
Sbjct: 648  TKGFIRESLSPCGVPALLTPKKDGSWRMCVDSRAINKITIKYRFPIPRLDDMLDMMVGSV 707

Query: 3391 TFSKLDLKSGYHQIRVRPGDEWKTAFKTKEGLYEWMVMPFGLSNAPSTFMRVMNQILKPF 3212
             FSK+DL+SGYHQIR+RPGDEWKT+FKTK+GLYEW+VMPFGL+NAPSTFMR+M Q+LKPF
Sbjct: 708  IFSKIDLRSGYHQIRIRPGDEWKTSFKTKDGLYEWLVMPFGLTNAPSTFMRIMTQVLKPF 767

Query: 3211 IGKFVVVYFDDILVYSVNASLHMQHLREVLIVLRREKMYAQMKKCEFMSPEVLFLGYIIT 3032
            IG+FVVVYFDDIL+YS +   H +HL++V+  LR EK Y  +KKC FMSP V+FLG++++
Sbjct: 768  IGRFVVVYFDDILIYSRSCEDHEEHLKQVMRTLRAEKFYINLKKCTFMSPSVVFLGFVVS 827

Query: 3031 GEGIKVDDSKIQAIVEWPQPTTITEARSFHGLASFYRRFIHHFSTIMAPITNCMKKIKFE 2852
             +G++ D  KI+AIV+WP PT I E RSFHG+A+FYRRFI +FS+IMAPIT CMK   F 
Sbjct: 828  SKGVETDPEKIKAIVDWPVPTNIHEVRSFHGMATFYRRFIRNFSSIMAPITECMKPGLFI 887

Query: 2851 WTREAENCFQEIKARLTVAPILALPNFELLFEVHCDASKLGIGAVLSQEGRPVAYYSEKF 2672
            WT+ A   F+EIK+++   PIL LP+FE +FEV CDAS +GIGAVLSQEG PVA++SEK 
Sbjct: 888  WTKAANKAFEEIKSKMVNPPILRLPDFEKVFEVACDASHVGIGAVLSQEGHPVAFFSEKL 947

Query: 2671 HGPQLRYSTYDMEFLAVVQTLKHWRHYLIHRDFVLYSDHEALKHLNSQQKLSSRHAKWAA 2492
            +G + +YSTYD+EF AVVQ ++HW+HYL +++FVLYSDHEAL++LNSQ+KL+SRHAKW++
Sbjct: 948  NGAKKKYSTYDLEFYAVVQAIRHWQHYLSYKEFVLYSDHEALRYLNSQKKLNSRHAKWSS 1007

Query: 2491 YIQEFTFSLKHKSGVQNRVADALSRRVSLLTQMHVQVPGFDTFSELYLEDVFFTKVLKEL 2312
            ++Q FTF+LKH +G++N+VADALSR+  LL  M     GF+     Y  D  F  V   L
Sbjct: 1008 FLQLFTFNLKHCAGIENKVADALSRKALLLVNMSTTTIGFEELKHCYDNDADFGDVYSSL 1067

Query: 2311 KENHQCPYI---MSNGFLFKGNQLCLPDCSLRQQVIKELHAEG---HFGQKKTFQLVSKT 2150
                +   I   +  G+LF  N+LCLP  SLR  VI ELH  G   HFG+ KT  LV   
Sbjct: 1068 LSGSKATCIDFQILEGYLFYKNRLCLPRTSLRDHVIWELHGGGMGGHFGRDKTIALVEDR 1127

Query: 2149 YFWPSMRKDIDKYVARCYICQRGKGATSNAGLYMPLPIPQAPWTDVTMDFILGLPRTQRG 1970
            +FWPS++KD+ K + +C  CQ GKG+  N GLY PLP+P  PW D++MDF+LGLPRTQRG
Sbjct: 1128 FFWPSLKKDVWKVIKQCRACQVGKGSKQNTGLYTPLPVPSKPWEDLSMDFVLGLPRTQRG 1187

Query: 1969 MDSIFVIVDRFSKMAHFVACRKTMDATHIAGLYFKEIVRLHGIPKSITSDRDSKFVSHFW 1790
             DSIFV+VDRFSKMAHF+ C+K  DA+++A L+FKE+VRLHG+P+SI SDRD        
Sbjct: 1188 FDSIFVVVDRFSKMAHFIPCKKASDASYVAALFFKEVVRLHGLPQSIVSDRD-------- 1239

Query: 1789 RTLWKLLGTSLQFSSAYHPQTDGQTEVVNRSLGNLLRCLVGNQPRKWDQALSQAEFAFNR 1610
                                     ++ NRSLGNLLRC+V +Q RKWD  L QAEFAFN 
Sbjct: 1240 -------------------------KLSNRSLGNLLRCIVRDQLRKWDNXLPQAEFAFNS 1274

Query: 1609 STNRTTGFSPFEVIYGQNPQTALDLIPISNVGKTDKKVEELISNLQQIQTQVKSQLEESI 1430
            STNRTTG+SPFEV YG  P+  +DLIP+    +T +  +    +++ I  +V+ +++ S 
Sbjct: 1275 STNRTTGYSPFEVAYGLKPKQPVDLIPLPTSVRTSQDGDAFARHIRDIHEKVREKIKISN 1334

Query: 1429 AKYKEQADQKRRKVVFDAGDFVWATFTKDRHPYGEFNKLSPRKMGPFEIAEKINENAYRL 1250
              YKE AD  RR + F  GD V      +R     + KL  +K GPF + +++ ENAY L
Sbjct: 1335 ENYKEAADAHRRYIQFQEGDLVMVRLRPERFHPSTYQKLQAKKAGPFRVLKRLGENAYLL 1394

Query: 1249 KLPSHIRTHEVFNVKHLTPYHGNEGDGEE 1163
            +LPS++    +FNV+ L  YHG+  D  E
Sbjct: 1395 ELPSNLHFSPIFNVEDLHIYHGHHNDVSE 1423


>ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508703673|gb|EOX95569.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 1452

 Score = 1280 bits (3312), Expect = 0.0
 Identities = 635/1277 (49%), Positives = 851/1277 (66%), Gaps = 41/1277 (3%)
 Frame = -2

Query: 4882 LKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQDFQDVLNMYDLWDVSDAHQ 4703
            ++Q   ++ +YT EF NL  R  L ES+E++  RY+ GL    +D + +  L+++ DA Q
Sbjct: 104  IEQNNMTVEEYTSEFNNLSIRVGLAESNEQITSRYLAGLNHSIRDEMGVVRLYNIEDARQ 163

Query: 4702 RALLFEKQQQRSRFGQSMI-----------RSFPS-------ARTQKPTTSGAPTAPIAP 4577
             AL  EK+  R    + +            R +P+       A T   T  GA       
Sbjct: 164  YALSAEKRVLRYGARKPLYGTHWQNNSEARRGYPTSQQNYQGAATINKTNRGATNVEKND 223

Query: 4576 KASHPVP---------SPQISNATNSLRCFKCNEPGHRASHCPRNSGRSGKQLLIEEADA 4424
            K    +P         S     + + +RCF C E GH +  CP+               A
Sbjct: 224  KGKSIMPYGGQNSSGSSTNKRGSNSHIRCFTCGEKGHTSFACPQRKVNL----------A 273

Query: 4423 ELDQNESPIXXXXXXXXXXXEVAGDVGEALVIRKSLFTPRDQSESDWLRTNIFRTTCTVE 4244
            EL +   P+           +V    GE+LV+R+ + T  ++   DW R +IFRT    E
Sbjct: 274  ELGEELEPVYDEYKEEVEEIDVYPAQGESLVVRRIMTTTVNEEAEDWKRRSIFRTRVVCE 333

Query: 4243 GKICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLSWFKKGGEVSVNKRCVVSFSIG 4064
            GK+C L+ID GS EN IS+EAV KL+L    HPYPY + W KKG EV V  +C+V F++G
Sbjct: 334  GKVCDLVIDGGSMENIISKEAVNKLKLPTNKHPYPYKIGWLKKGHEVPVTTQCLVKFTMG 393

Query: 4063 KTYKDQVWCDVVPLEACHILLGRPWQYDKDVSHNGRRNTYSFIHNKVKITLVPSKELGLK 3884
                D+  CDVVP++  HIL+GRPW YD D+ H  + NTYSF  N  + TL P +E   K
Sbjct: 394  DNSDDEALCDVVPMDVGHILVGRPWLYDHDMVHKTKPNTYSFYKNNKRYTLYPLREETKK 453

Query: 3883 PHS---GDNTQLLSLHQFDKAIHDEGIVYMLVS----CDKSTEKP-IPVAVKPLLAEFSD 3728
              +      T+ LS   F+    + GI+Y LV+     D+ ++ P  P  ++ LL EF +
Sbjct: 454  SANHKISKITRYLSAENFEAEGSEMGIMYALVTKHLKSDQMSKSPQYPTEIQQLLKEFGE 513

Query: 3727 IFPEELPYGLPPLRDIQHQIDLVPGSILPNRPHYRMSPKEHKELAKQVNELIGKGYIRES 3548
            +F E+LP  LPPLR IQH IDLVPG+ LPN P YRM P +  E+ +QV EL  KG +RES
Sbjct: 514  LFNEDLPKSLPPLRSIQHAIDLVPGAALPNLPAYRMPPMQRAEVQRQVEELFEKGLVRES 573

Query: 3547 ISPCGVPALLTPKKDGTWRMCVDSRAINKITIKYRFPIPRLDDMLDNLCGATTFSKLDLK 3368
             SPC  PALL PKKDG+WRMCVDSRAINKITIKYRFPIPRLD+MLD L G+  FSK+DLK
Sbjct: 574  KSPCACPALLAPKKDGSWRMCVDSRAINKITIKYRFPIPRLDEMLDQLVGSRVFSKIDLK 633

Query: 3367 SGYHQIRVRPGDEWKTAFKTKEGLYEWMVMPFGLSNAPSTFMRVMNQILKPFIGKFVVVY 3188
            SGYHQIR+R GDEWKTAFKT +GL+EW+VMPFGLSNAPSTFMRVM ++LKPF+  FVVVY
Sbjct: 634  SGYHQIRMRDGDEWKTAFKTPDGLFEWLVMPFGLSNAPSTFMRVMAEVLKPFLNSFVVVY 693

Query: 3187 FDDILVYSVNASLHMQHLREVLIVLRREKMYAQMKKCEFMSPEVLFLGYIITGEGIKVDD 3008
            FDDIL+YS     H++HLR+VL VL++E++Y  +KKC FM PEV+FLG+I++ EG+K D 
Sbjct: 694  FDDILIYSHTKEKHLKHLRQVLEVLQKEQLYINLKKCSFMQPEVVFLGFIVSAEGLKPDP 753

Query: 3007 SKIQAIVEWPQPTTITEARSFHGLASFYRRFIHHFSTIMAPITNCMKKIKFEWTREAENC 2828
             KI+AI EWP PT+I E RSFHGLASFYRRFI +FS+IM+PIT  +KK  FEW+  A+  
Sbjct: 754  EKIRAISEWPAPTSIKEVRSFHGLASFYRRFIRNFSSIMSPITESLKKDGFEWSHSAQKA 813

Query: 2827 FQEIKARLTVAPILALPNFELLFEVHCDASKLGIGAVLSQEGRPVAYYSEKFHGPQLRYS 2648
            F+ +KA +T AP+LALP+FE LF V CDAS +GIGAVLSQ+GRP+ ++SEK    + RYS
Sbjct: 814  FERVKALMTEAPVLALPDFEKLFVVECDASYVGIGAVLSQDGRPIEFFSEKLTDSRRRYS 873

Query: 2647 TYDMEFLAVVQTLKHWRHYLIHRDFVLYSDHEALKHLNSQQKLSSRHAKWAAYIQEFTFS 2468
            TYD+EF A+V+ ++HW+HYL +R+F +YSDH+AL++L+SQ+KLS++HAKW++++ EF FS
Sbjct: 874  TYDLEFYALVRAIRHWQHYLAYREFAVYSDHQALRYLHSQKKLSNQHAKWSSFLNEFNFS 933

Query: 2467 LKHKSGVQNRVADALSRRVSLLTQMHVQVPGFDTFSELYLEDVFFTKVLKELKENHQC-- 2294
            LK+KSG  N VADALSRR  +L+ M  QV GF+     Y  D +F+K++ +L+ + Q   
Sbjct: 934  LKYKSGQSNTVADALSRRCKMLSVMSTQVTGFEELKNQYSSDSYFSKIIADLQGSLQAEN 993

Query: 2293 -PYIMSNGFLFKGNQLCLPDCSLRQQVIKELHAE---GHFGQKKTFQLVSKTYFWPSMRK 2126
             PY +   +LFKGNQLC+P+ SLR+Q+I+ELH     GHFG+ KT  +V+  Y+WP MR+
Sbjct: 994  LPYRLHEDYLFKGNQLCIPEGSLREQIIRELHGNGLGGHFGRDKTLVMVADRYYWPKMRR 1053

Query: 2125 DIDKYVARCYICQRGKGATSNAGLYMPLPIPQAPWTDVTMDFILGLPRTQRGMDSIFVIV 1946
            D+++ V RC  C  GKG+  N GLY+PLP P APW  ++MDF+LGLP+T +G DSIFV+V
Sbjct: 1054 DVERLVKRCPACLFGKGSAQNTGLYVPLPEPDAPWIHLSMDFVLGLPKTTKGFDSIFVVV 1113

Query: 1945 DRFSKMAHFVACRKTMDATHIAGLYFKEIVRLHGIPKSITSDRDSKFVSHFWRTLWKLLG 1766
            DRFSKMAHF+ C +T DATHIA L+F+EIV LHGIP SI SDR  KF+ +FWRTLW+  G
Sbjct: 1114 DRFSKMAHFIPCFRTSDATHIAELFFREIVILHGIPTSIVSDRHVKFMGYFWRTLWRKFG 1173

Query: 1765 TSLQFSSAYHPQTDGQTEVVNRSLGNLLRCLVGNQPRKWDQALSQAEFAFNRSTNRTTGF 1586
            T L++SS  HPQTDGQTEVVNRSLGN+LRCL+ N P+ WD  + QAEFA+N S NR+   
Sbjct: 1174 TELKYSSTCHPQTDGQTEVVNRSLGNMLRCLIQNNPKTWDLVIPQAEFAYNNSVNRSIKK 1233

Query: 1585 SPFEVIYGQNPQTALDLIPISNVGKTDKKVEELISNLQQIQTQVKSQLEESIAKYKEQAD 1406
            +PFE  YG  PQ  LDL+P+    +   + E     +++I  +VK+ L+ S A+Y   A+
Sbjct: 1234 TPFEAAYGLKPQHVLDLVPLPQEARVSNEGELFADQIRKIHEEVKAALKASNAEYSFTAN 1293

Query: 1405 QKRRKVVFDAGDFVWATFTKDRHPYGEFNKLSPRKMGPFEIAEKINENAYRLKLPSHIRT 1226
            Q RRK  F+ GD V     ++R P G ++KL  RK GP ++ +KI+ NAY ++LP  ++ 
Sbjct: 1294 QHRRKQEFEEGDQVLVHLRQERFPKGTYHKLKSRKFGPCKVLKKISSNAYLIELPPELQI 1353

Query: 1225 HEVFNVKHLTPYHGNEG 1175
            + +FN+  L P+ G +G
Sbjct: 1354 NPIFNILDLYPFDGCDG 1370


>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score = 1271 bits (3290), Expect = 0.0
 Identities = 655/1394 (46%), Positives = 890/1394 (63%), Gaps = 45/1394 (3%)
 Frame = -2

Query: 5101 EVLEFKEVPENKRVPLVATRLRGRASAWWKQLKITRERRGKQKVTQWDDMRKKMREEFLP 4922
            ++ E+K   + K   +   +L+G AS W+  LK  R + GK  +  W  ++KKM  +F+ 
Sbjct: 115  KIFEYKNYNDVKACKVAVLKLKGYASLWYDNLKHQRLKEGKDPLRSWSKLKKKMLAKFVT 174

Query: 4921 YNYKRTLHQRLQNLKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQDFQDVL 4742
             +Y + L  +L NLKQ  +++  Y  EF  L  +CE+ E SE+ + R++ GL ++    +
Sbjct: 175  KDYTQDLFIKLSNLKQKEKTVEAYLREFEQLTLQCEINEKSEQRIARFLEGLDKNIAAEV 234

Query: 4741 NMYDLWDVSDAHQRALLFEKQQQRSRFG---QSMIRSFPSARTQKP------TTSGAPTA 4589
             M  LW   D    +L  EK  +        + + R + S +   P      +T     A
Sbjct: 235  RMQPLWSYDDVVNLSLRVEKMGKTKPVATRPKPVFRPYSSVKINDPPKTTPQSTVDKGKA 294

Query: 4588 PIAPKASHPVPSPQISNATNSLRCFKCNEPGHRASHCPRNSG----------RSG----- 4454
            P+ PK + P+       + + ++CF+C   GH    CP              R G     
Sbjct: 295  PMNPKINPPL-------SRDKIKCFQCQGFGHFRKDCPSARTLTAIEVAEWEREGLVEYE 347

Query: 4453 --KQLLIEEADAELDQNESPIXXXXXXXXXXXEVAGDVGEALVIRKSLFTPRDQSESDWL 4280
              + L++EE ++E + +   I               D G +L + + + + +   E+D  
Sbjct: 348  EDEALVLEEVESEKETSPDQIVAHP-----------DTGHSLFLWRVMHSQQAPLEADQ- 395

Query: 4279 RTNIFRTTCTVEGKICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLSWFKKGGEVS 4100
            R+ IFR+ CTV+G++C+LII+ GSC N  S   V KL L  + HP PY L W  K   V 
Sbjct: 396  RSMIFRSRCTVQGRVCNLIINGGSCTNVASTTMVSKLGLPTQEHPNPYKLRWLSKDSGVR 455

Query: 4099 VNKRCVVSFSIGKTYKDQVWCDVV-PLEACHILLGRPWQYDKDVSHNGRRNTYSFIHNKV 3923
            V+K+C++SFSIGK YKD+V CDVV P++ACH+LLGRPW+YD++ +H G+ N Y F H   
Sbjct: 456  VDKQCIISFSIGKMYKDEVLCDVVVPMDACHLLLGRPWEYDRNTTHQGKDNVYIFKHQGK 515

Query: 3922 KITLVP----SKELGLK--PHSGDNTQLLSLHQFDKAIHDEGIVYMLVSCDKSTEKP--I 3767
            K+TL P     ++ G    P        LS     K I     V ML+S + + E+   +
Sbjct: 516  KVTLTPLPPNQRDYGSPNVPEEMSGVLFLSEAAMIKEIRQAQPVLMLLSREVNQEENTVV 575

Query: 3766 PVAVKPLLAEFSDIFPEELPYGLPPLRDIQHQIDLVPGSILPNRPHYRMSPKEHKELAKQ 3587
            P AV PL+  F ++FP+ELP GLPPLR I+H IDLVPGS+LPN+P YR  P   KEL  Q
Sbjct: 576  PTAVAPLIQRFQEVFPDELPSGLPPLRGIEHHIDLVPGSVLPNKPAYRCDPNATKELQHQ 635

Query: 3586 VNELIGKGYIRESISPCGVPALLTPKKDGTWRMCVDSRAINKITIKYRFPIPRLDDMLDN 3407
            + EL+ KG++RES+SPC VPALL PKKDGTWRMC DSRAIN IT+KYRFPIPRLDDMLD 
Sbjct: 636  IEELMAKGFVRESLSPCAVPALLVPKKDGTWRMCTDSRAINNITVKYRFPIPRLDDMLDE 695

Query: 3406 LCGATTFSKLDLKSGYHQIRVRPGDEWKTAFKTKEGLYEWMVMPFGLSNAPSTFMRVMNQ 3227
            L GA+ FSK+DL+ GYHQ+R+R GDEWKTAFKTK GLYEW+VMPFGLSNAPSTFMR+M +
Sbjct: 696  LSGASIFSKIDLRQGYHQVRIREGDEWKTAFKTKHGLYEWLVMPFGLSNAPSTFMRLMTE 755

Query: 3226 ILKPFIGKFVVVYFDDILVYSVNASLHMQHLREVLIVLRREKMYAQMKKCEFMSPEVLFL 3047
            +L+P +GKF VVYFDDILVYS     H++HL  V  +LR +K+Y +++KC FM  EV FL
Sbjct: 756  VLRPCLGKFAVVYFDDILVYSKTKGEHLKHLEVVFKILREQKLYGKLEKCTFMVEEVAFL 815

Query: 3046 GYIITGEGIKVDDSKIQAIVEWPQPTTITEARSFHGLASFYRRFIHHFSTIMAPITNCMK 2867
            GY+I+G GI VD   I A+  WP PTT+TE RSFHGLASFYRRFI +FST++APIT CM+
Sbjct: 816  GYLISGRGISVDQENIAAMQSWPTPTTVTEVRSFHGLASFYRRFIKNFSTVVAPITECMR 875

Query: 2866 KIKFEWTREAENCFQEIKARLTVAPILALPNFELLFEVHCDASKLGIGAVLSQEGRPVAY 2687
            K +F+WT +A+  F++IK  +   PIL LP+F+ LFEV CDAS +GIGAVL Q  +PVAY
Sbjct: 876  KGEFQWTEQAQQSFEKIKQLMCNTPILKLPDFDQLFEVECDASGVGIGAVLIQSQKPVAY 935

Query: 2686 YSEKFHGPQLRYSTYDMEFLAVVQTLKHWRHYLIHRDFVLYSDHEALKHLNSQQKLSSRH 2507
            +SEK +G +L+YSTYD EF A+++ L HW HYL  + FVL+SDHEALK++N Q KL+ RH
Sbjct: 936  FSEKLNGAKLKYSTYDKEFYAIIRALMHWNHYLKPKPFVLHSDHEALKYINGQHKLNFRH 995

Query: 2506 AKWAAYIQEFTFSLKHKSGVQNRVADALSRRVSLLTQMHVQVPGFDTFSELYLEDVFFTK 2327
            AKW  ++Q FTFS K+K G +N VADALSRR SLL+ M  +V GF+   ELY ED  F++
Sbjct: 996  AKWVEFLQSFTFSSKYKEGKKNVVADALSRRHSLLSVMSNRVLGFEFMKELYKEDPDFSE 1055

Query: 2326 VLKELKENHQ---CPYIMSNGFLFKGNQLCLPDCSLRQQVIKELHA---EGHFGQKKTFQ 2165
                  E H+     Y++  GFLF+GN+LC+P  S R  +I+E+H+    GHFG +KT +
Sbjct: 1056 EWITQTEGHKNQGSKYLLQEGFLFQGNKLCVPRGSYRDLLIREVHSGGMGGHFGVQKTLE 1115

Query: 2164 LVSKTYFWPSMRKDIDKYVARCYICQRGKGATSNAGLYMPLPIPQAPWTDVTMDFILGLP 1985
            ++   ++WP M  D+   + RC  CQ  K ++   G Y PLP+P  PW D++MDFI+ LP
Sbjct: 1116 ILQDQFYWPRMMGDVQIILRRCSKCQLSK-SSFQPGPYTPLPVPSKPWEDLSMDFIVALP 1174

Query: 1984 RTQRGMDSIFVIVDRFSKMAHFVACRKTMDATHIAGLYFKEIVRLHGIPKSITSDRDSKF 1805
            RTQRG DS+ V+VDRFSKMAHFVAC+KT DA  +A L+ KEIVRLHG+PK+I SDRD+KF
Sbjct: 1175 RTQRGKDSVMVVVDRFSKMAHFVACKKTEDAVSVAELFLKEIVRLHGVPKTIVSDRDTKF 1234

Query: 1804 VSHFWRTLWKLLGTSLQFSSAYHPQTDGQTEVVNRSLGNLLRCLVGNQPRKWDQALSQAE 1625
            + +FW+TLWKLL T L FS+++HPQTDGQTEV NR+LG +LRCLV    + WD  L+ AE
Sbjct: 1235 MGYFWKTLWKLLKTKLLFSTSHHPQTDGQTEVTNRTLGRILRCLVSKSLKDWDLKLAAAE 1294

Query: 1624 FAFNRSTNRTTGFSPFEVIYGQNPQTALDL--IPISNVG-KTDKKVEELISNLQQIQTQV 1454
            FAFNR+ +  TG SPFEV+YG NP   LDL  +P  N+     K+ E+L+    ++   V
Sbjct: 1295 FAFNRAPSTATGHSPFEVVYGVNPLMPLDLSSVPKENINLDAMKRAEQLL----KLHETV 1350

Query: 1453 KSQLEESIAKYKEQADQKRRKVVFDAGDFVWATFTKDRHPYGEFNKLSPRKMGPFEIAEK 1274
            K Q+E +  +Y++     + K  F+ GD VW    K+R P    NKL PR  GPFE+ EK
Sbjct: 1351 KRQIERTNEQYQKHLKVPKGKKEFEPGDLVWIHLRKERFPAKRKNKLMPRSDGPFEVVEK 1410

Query: 1273 INENAYRLKLPSHIRTHEVFNVKHLTPYHGNEGDGEENS-RTNSFYPGEDDVHQLADSYL 1097
            I  +AY++ LP     H  FNV  L+PY+ + GD E    RT+   PG  D    A +  
Sbjct: 1411 IGPSAYKIDLPGDYGVHGTFNVGDLSPYYEDSGDEEVTGLRTSPVQPGGVDAG--ASNQG 1468

Query: 1096 DKLEKSKASQKTSS 1055
            +++ + +A+Q T+S
Sbjct: 1469 NQIFQGQATQATTS 1482


>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
          Length = 1475

 Score = 1263 bits (3267), Expect = 0.0
 Identities = 649/1367 (47%), Positives = 859/1367 (62%), Gaps = 33/1367 (2%)
 Frame = -2

Query: 5098 VLEFKEVPENKRVPLVATRLRGRASAWWKQLKITRERRGKQKVTQWDDMRKKMREEFLPY 4919
            V EFK   + K   +   +L+G AS W++ LK  R R GK+ +  W  ++KK+ E+F+P 
Sbjct: 114  VFEFKGYSDGKAFKVAILKLKGYASLWYENLKNQRRRDGKEPIKSWLKLKKKLNEKFIPK 173

Query: 4918 NYKRTLHQRLQNLKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQDFQDVLN 4739
             Y + +  +L  LKQ  + +  Y  +F  L  +CEL E  E+ + R++ GL       + 
Sbjct: 174  EYTQDIFIKLTQLKQDQQPLESYLRDFEQLTLQCELNEKPEQKIARFVEGLDTKIAHRVR 233

Query: 4738 MYDLWDVSDAHQRALLFEKQQQRSRFGQSMIRSFPSARTQKPTTSGAPTAPIAPKASHPV 4559
            M  +W   +A   AL  EK  +              A T KPTT     A   P  S  +
Sbjct: 234  MQQVWSFDEAVNLALRVEKMGKGK------------ATTTKPTTK---PATFRPPTSFKI 278

Query: 4558 PSPQISNATNSL-----------------RCFKCNEPGHRASHCPRNSGRSGKQLLIEEA 4430
              P   N T  L                 +C++C   GH A  CP     S  +++    
Sbjct: 279  NEPPSQNKTTILDKGKAAETSQKKTMPLKKCYQCQGYGHFAKECPTKRALSSFEVVHWGD 338

Query: 4429 DAELDQNESPIXXXXXXXXXXXEVAGDVGEALVIRKSLFTPRDQSESDWLRTNIFRTTCT 4250
            D  L  +E               V  D G +LV  + + T     E D  R  IFR+ CT
Sbjct: 339  DEILVCDEE---VEGTDHEEDDVVMPDAGLSLVTWRVMHTQPQPLEMDQ-RQQIFRSRCT 394

Query: 4249 VEGKICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLSWFKKGGEVSVNKRCVVSFS 4070
            ++G++C+LIID GSC N  S   + KL L  + HP PY L W  KG EV V+K+C+V+FS
Sbjct: 395  IKGRVCNLIIDGGSCTNVASSTLIEKLSLPTQDHPSPYKLRWLNKGAEVRVDKQCLVTFS 454

Query: 4069 IGKTYKDQVWCDVVPLEACHILLGRPWQYDKDVSHNGRRNTYSFIHNKVKITLVPSKELG 3890
            IGK Y D+  CDV+P++ACH+LLGRPW++D+D  H+GR NTY+F     K+ L P   + 
Sbjct: 455  IGKNYSDEALCDVLPMDACHLLLGRPWEFDRDSVHHGRDNTYTFKFRSRKVILTPLPPV- 513

Query: 3889 LK---PHS----GDNTQLLSLHQFDKAIHDEGIVYMLVSCDK--STEKPIPVAVKPLLAE 3737
            LK   P S         L++  +  + +  +  VY L++ D        +P  V+ LL  
Sbjct: 514  LKHTTPPSMLEPSKEVLLINEAEMLQELKGDEDVYALIAKDVVFGQNVSLPKEVQELLQS 573

Query: 3736 FSDIFPEELPYGLPPLRDIQHQIDLVPGSILPNRPHYRMSPKEHKELAKQVNELIGKGYI 3557
            + D+FP ELP GLPPLR I+HQID +PG+ LPN+  YR  PK  +EL +Q+ EL+ KG++
Sbjct: 574  YEDVFPNELPSGLPPLRGIEHQIDFIPGATLPNKAAYRSDPKATQELQQQIGELVSKGFV 633

Query: 3556 RESISPCGVPALLTPKKDGTWRMCVDSRAINKITIKYRFPIPRLDDMLDNLCGATTFSKL 3377
            RES+SPC VPALL PKKDG+WRMC DSRAIN ITIKYRFPIPRLDD+LD L GA  FSK+
Sbjct: 634  RESLSPCSVPALLVPKKDGSWRMCTDSRAINNITIKYRFPIPRLDDILDELSGAQLFSKI 693

Query: 3376 DLKSGYHQIRVRPGDEWKTAFKTKEGLYEWMVMPFGLSNAPSTFMRVMNQILKPFIGKFV 3197
            DL+ GYHQ+R++ GDEWKTAFKTK GLYEW+VMPFGLSNAPSTFMR+M ++L+P++G+FV
Sbjct: 694  DLRQGYHQVRIKEGDEWKTAFKTKHGLYEWLVMPFGLSNAPSTFMRLMTEVLRPYLGRFV 753

Query: 3196 VVYFDDILVYSVNASLHMQHLREVLIVLRREKMYAQMKKCEFMSPEVLFLGYIITGEGIK 3017
            VVYFDDILVYS +   H++HL+ +   LR  K+Y +++KC FM  EV FLG+II+  GI 
Sbjct: 754  VVYFDDILVYSPSKEEHLKHLQVLFETLREHKLYGKLEKCSFMQNEVQFLGFIISDRGIL 813

Query: 3016 VDDSKIQAIVEWPQPTTITEARSFHGLASFYRRFIHHFSTIMAPITNCMKKIKFEWTREA 2837
            VD  K++AI  WP P  IT+ RSFHGLASFYRRFI  FST+MAPIT CMKK +F+W  +A
Sbjct: 814  VDQEKVKAIKSWPIPKNITDVRSFHGLASFYRRFIKDFSTLMAPITECMKKGEFKWGDKA 873

Query: 2836 ENCFQEIKARLTVAPILALPNFELLFEVHCDASKLGIGAVLSQEGRPVAYYSEKFHGPQL 2657
            E+ F  IK +L  +PIL LPNF  LFEV CDAS +GIGAVL QE +P+AY+SEK  G +L
Sbjct: 874  ESSFNIIKEKLCESPILTLPNFNKLFEVECDASGIGIGAVLVQEHKPIAYFSEKLSGAKL 933

Query: 2656 RYSTYDMEFLAVVQTLKHWRHYLIHRDFVLYSDHEALKHLNSQQKLSSRHAKWAAYIQEF 2477
             YSTYD EF A+V+ L HW HYL  R FVL+SDHEALK++N Q KL+ RHAKW  ++Q F
Sbjct: 934  NYSTYDKEFYAIVRALNHWSHYLKPRPFVLHSDHEALKYINGQHKLNHRHAKWVEFLQSF 993

Query: 2476 TFSLKHKSGVQNRVADALSRRVSLLTQMHVQVPGFDTFSELYLEDVFFT---KVLKELKE 2306
             FS K+  G  N VADALSRR  +L+ M  +V GF+   ELY+ED  F    ++L+  + 
Sbjct: 994  NFSSKYIEGKDNIVADALSRRFIMLSFMEQRVLGFEYMKELYVEDPDFKGEWELLQSGQI 1053

Query: 2305 NHQCPYIMSNGFLFKGNQLCLPDCSLRQQVIKELHAE---GHFGQKKTFQLVSKTYFWPS 2135
              +  Y++ NGFLF GN+LC+P    R  +I+E+H+    GHFG +KT+ ++ + ++WP 
Sbjct: 1054 KLKSKYLVQNGFLFFGNKLCVPRGPYRNLLIREVHSNGLAGHFGIQKTYDILQEQFYWPK 1113

Query: 2134 MRKDIDKYVARCYICQRGKGATSNAGLYMPLPIPQAPWTDVTMDFILGLPRTQRGMDSIF 1955
            M  D+   + RC  CQ+ K +    G Y PLP+P  PW D++MDFI+ LPRTQRG DSI 
Sbjct: 1114 MLGDVQDVIKRCAPCQQSK-SYFQTGPYTPLPVPNQPWEDISMDFIVALPRTQRGKDSIM 1172

Query: 1954 VIVDRFSKMAHFVACRKTMDATHIAGLYFKEIVRLHGIPKSITSDRDSKFVSHFWRTLWK 1775
            V+VDRFSKMAHF+AC+KT DAT +A LYFKE+V+LHGIPKSI SDRDSKF+SHFWRTLWK
Sbjct: 1173 VVVDRFSKMAHFIACKKTEDATSVAELYFKEVVKLHGIPKSIVSDRDSKFMSHFWRTLWK 1232

Query: 1774 LLGTSLQFSSAYHPQTDGQTEVVNRSLGNLLRCLVGNQPRKWDQALSQAEFAFNRSTNRT 1595
            LL T L FS+++HPQTDGQTEV N++LG +LRC V    + WD  L+QAEFAFNR+ + T
Sbjct: 1233 LLKTRLLFSTSHHPQTDGQTEVTNKTLGRILRCTVARSLKDWDLKLAQAEFAFNRAPSTT 1292

Query: 1594 TGFSPFEVIYGQNPQTALDLIPISNVGKTDKKVEELISNLQQIQTQVKSQLEESIAKYKE 1415
            TG SPFEV+YG NP    DL PI      D   ++ +  +  I  QVK Q+E++   +K 
Sbjct: 1293 TGKSPFEVVYGVNPMMPTDLAPIKR-NTIDYDAKKRVEQMLHIHEQVKKQIEKANEAHKG 1351

Query: 1414 QADQKRRKVVFDAGDFVWATFTKDRHPYGEFNKLSPRKMGPFEIAEKINENAYRLKLPSH 1235
            ++   +    F+ GD VW    K+R P    NKL PR  GPFE+ EK   NAY++ LP  
Sbjct: 1352 KSKGVKGTKSFEPGDLVWIHLRKERFPEKRKNKLMPRADGPFEVLEKFGSNAYKINLPGE 1411

Query: 1234 IRTHEVFNVKHLTPYHGN-EGDGEENSRTNSFYPGEDDVHQLADSYL 1097
               H  FNV  L+PY+   E D  E+ R N F  GE + +Q    ++
Sbjct: 1412 YGVHGTFNVGDLSPYYEEIEEDKLEDLRANPFQEGEIETNQTEKGHI 1458


>ref|XP_007220740.1| hypothetical protein PRUPE_ppa023598mg [Prunus persica]
            gi|462417202|gb|EMJ21939.1| hypothetical protein
            PRUPE_ppa023598mg [Prunus persica]
          Length = 1457

 Score = 1216 bits (3145), Expect = 0.0
 Identities = 626/1382 (45%), Positives = 879/1382 (63%), Gaps = 42/1382 (3%)
 Frame = -2

Query: 5092 EFKEVPENKRVPLVATRLRGRASAWWKQLKITRERRGKQKVTQWDDMRKKMREEFLPYNY 4913
            +  EVPE+K V +VA RL+  A+ WW QL+ +R+R+GKQ+V  W  M+  M E FLP +Y
Sbjct: 108  DIMEVPEHKMVKMVAFRLKATAAVWWDQLQNSRQRQGKQRVRTWRKMKSLMMERFLPTDY 167

Query: 4912 KRTLHQRLQNLKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQDFQDVLNMY 4733
            ++ L++      QG RS+ +YTEEF +L  R  L E+  + + RY  GLK   Q+ + M 
Sbjct: 168  EQILYRMYLGCTQGNRSVSEYTEEFMHLAERNHLTETDNQKVARYNNGLKISIQEKIGMQ 227

Query: 4732 DLWDVSDAHQRAL---LFEKQQQRSRFGQSMIRSFPSAR------------TQKPTTSGA 4598
            ++W + +A   A+   L EK++++  F ++   +   A              Q+P  +  
Sbjct: 228  NIWTLQEAINMAMKAELLEKEKRQPNFRRNTTEASEYATGASSGSGDKGKVQQQPRGTTK 287

Query: 4597 PTAPIAPKASHPVPSPQISNATNSLR------------CFKCNEPGHRASHCPRNSGRSG 4454
            P   +  K  +   S   +   +  +            C++C +PGHR++ CP  +  + 
Sbjct: 288  PATTVQNKNFNESSSRTFNRGQSRNQSQNPYAKPRTDICYRCQKPGHRSNVCPEWTQAN- 346

Query: 4453 KQLLIEEADAELDQNESPIXXXXXXXXXXXEVAGDVGEALVIRKSLFTPRDQSESDWLRT 4274
                IEE D + +++E              E    +   LV+++ L  P+++ +    R 
Sbjct: 347  ---FIEEVDEDEEKDEVGEDDYAGAEFAIEERMERI--ILVLQRVLLAPKEEGQ----RH 397

Query: 4273 NIFRTTCTVEGKICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLSWFKKGGEVSVN 4094
            +I R+ C+++ K+C +I+D+GSCENF+S++ V  LQL  EPH  PY+L W KKG  V V 
Sbjct: 398  SICRSLCSIKNKVCDVIVDNGSCENFVSKKLVEHLQLSTEPHVRPYSLGWVKKGPSVRVA 457

Query: 4093 KRCVVSFSIGKTYKDQVWCDVVPLEACHILLGRPWQYDKDVSHNGRRNTYSFIHNKVKIT 3914
            +   V  SIGK Y D V CDV+ ++ACHILLG+ WQ+D D ++ GR N   F  N  KI 
Sbjct: 458  ETYSVPLSIGKHYIDDVLCDVIDMDACHILLGQLWQFDVDATYKGRDNVILFSWNNRKIA 517

Query: 3913 LV---PSKELGLKPHSGDN---TQLLSLHQFDKAIHDEGIVYMLVSCDKST----EKPIP 3764
            +    PSK+  ++P +  +   T + S  + +K + +      LV          E  IP
Sbjct: 518  MATTKPSKQ-SVEPKTRSSSFLTLISSEQELNKVVKEAEYFCPLVLKGLLKLGRGESDIP 576

Query: 3763 VAVKPLLAEFSDIFPEELPYGLPPLRDIQHQIDLVPGSILPNRPHYRMSPKEHKELAKQV 3584
              V+ +L++F ++  E+LP  LP +RDIQH+IDLVPG+ LPN PHYRMSPKE+  L +Q+
Sbjct: 577  QDVQKILSQFQELLSEKLPNELPSMRDIQHRIDLVPGANLPNLPHYRMSPKENDILREQI 636

Query: 3583 NELIGKGYIRESISPCGVPALLTPKKDGTWRMCVDSRAINKITIKYRFPIPRLDDMLDNL 3404
             EL+ KG+IRES+SPC VP LL PKKD TWRMCVDSRAINKIT+K RFPIPRL+DMLD L
Sbjct: 637  EELLQKGFIRESLSPCAVPVLLVPKKDKTWRMCVDSRAINKITVKSRFPIPRLEDMLDVL 696

Query: 3403 CGATTFSKLDLKSGYHQIRVRPGDEWKTAFKTKEGLYEWMVMPFGLSNAPSTFMRVMNQI 3224
             G+  FSK+DL+SGYHQIR+RPGDEWKTAFK+K+GL+EW+VMPFGLSNAPSTFMR+MNQ+
Sbjct: 697  SGSRVFSKIDLRSGYHQIRIRPGDEWKTAFKSKDGLFEWLVMPFGLSNAPSTFMRLMNQV 756

Query: 3223 LKPFIGKFVVVYFDDILVYSVNASLHMQHLREVLIVLRREKMYAQMKKCEFMSPEVLFLG 3044
            L+PFIG FVVVYFDDIL+YS     H+ HLR+VL VLR  K+Y  +KKC F + ++LFLG
Sbjct: 757  LRPFIGSFVVVYFDDILIYSTTKEEHLVHLRQVLDVLRENKLYMNLKKCTFCTNKLLFLG 816

Query: 3043 YIITGEGIKVDDSKIQAIVEWPQPTTITEARSFHGLASFYRRFIHHFSTIMAPITNCMKK 2864
            +++   GI+VDD KI+AI++WP P  ++E RSFHGLA+FYRRF+ HFS+I APIT C+KK
Sbjct: 817  FVVGENGIQVDDEKIKAILDWPTPKIVSEVRSFHGLATFYRRFVRHFSSITAPITECLKK 876

Query: 2863 IKFEWTREAENCFQEIKARLTVAPILALPNFELLFEVHCDASKLGIGAVLSQEGRPVAYY 2684
             +F W  E E  F +IK +L  AP+LALPNFE +FEV CDAS +G+GAVLSQ+ RPVA++
Sbjct: 877  GRFSWGDEQERSFADIKEKLCTAPVLALPNFEKVFEVECDASGVGVGAVLSQDKRPVAFF 936

Query: 2683 SEKFHGPQLRYSTYDMEFLAVVQTLKHWRHYLIHRDFVLYSDHEALKHLNSQQKLSSRHA 2504
            SEK      ++STYD EF AVV+ LK W HYLI ++FVL++DH+AL              
Sbjct: 937  SEKLSDACQKWSTYDQEFYAVVRALKQWEHYLIQKEFVLFTDHQAL-------------- 982

Query: 2503 KWAAYIQEFTFSLKHKSGVQNRVADALSRRVSLLTQMHVQVPGFDTFSELYLEDVFFTKV 2324
            +W  ++Q+F+F ++H SG  NRV DALSRR SLL     +V GF+   ELY  D  F ++
Sbjct: 983  RWVTFLQKFSFVIRHTSGKTNRVVDALSRRASLLVTQTQEVVGFECLKELYEGDDDFREI 1042

Query: 2323 -LKELKENHQCPYIMSNGFLFKGNQLCLPDCSLRQQVIKELHA---EGHFGQKKTFQLVS 2156
              K   +     Y ++ G+LFKGNQLC+P  SLR+++I++LH     GH G+ KT   + 
Sbjct: 1043 WTKCTNQEPMADYFLNEGYLFKGNQLCIPVSSLREKLIQDLHGGGLSGHLGRDKTIAGMK 1102

Query: 2155 KTYFWPSMRKDIDKYVARCYICQRGKGATSNAGLYMPLPIPQAPWTDVTMDFILGLPRTQ 1976
            + ++WP +++D+   V +CY CQ  KG   N GLYMPLP+P   W D+ MDF+LGLPRTQ
Sbjct: 1103 ERFYWPQLKRDVGTIVRKCYTCQTSKGQVQNTGLYMPLPVPNDIWQDLAMDFVLGLPRTQ 1162

Query: 1975 RGMDSIFVIVDRFSKMAHFVACRKTMDATHIAGLYFKEIVRLHGIPKSITSDRDSKFVSH 1796
            RGMDS++V+VDRFS MAHF+AC+KT DA++IA L F+E+VRLHG+P SITSDRD+KF+SH
Sbjct: 1163 RGMDSVYVVVDRFSNMAHFIACKKTDDASNIAKLVFREVVRLHGVPTSITSDRDAKFLSH 1222

Query: 1795 FWRTLWKLLGTSLQFSSAYHPQTDGQTEVVNRSLGNLLRCLVGNQPRKWDQALSQAEFAF 1616
            FW TLW+L GT+L  SS  HPQTD QTEV  R+LGN++                  EFA+
Sbjct: 1223 FWITLWRLFGTTLNRSSTTHPQTDSQTEVTTRTLGNMV------------------EFAY 1264

Query: 1615 NRSTNRTTGFSPFEVIYGQNPQTALDLIPISNVGKTDKKVEELISNLQQIQTQVKSQLEE 1436
            N   +  TG SPF ++Y   P   +DL+ +    +T    + L   +  ++ +VK +LE+
Sbjct: 1265 NSKIHSATGKSPFSIVYTAIPNHVVDLVKLPRGQQTSVAAKNLAEEVVAVRDEVKQKLEQ 1324

Query: 1435 SIAKYKEQADQKRRKVVFDAGDFVWATFTKDRHPYGEFNKLSPRKMGPFEIAEKINENAY 1256
            + AKYK  AD+ RR  VF  GD V     K+R P G ++KL P+K GP+++ ++IN+NAY
Sbjct: 1325 TNAKYKAAADRHRRVKVFQEGDSVMIFLRKERFPVGTYSKLKPKKYGPYKVLKRINDNAY 1384

Query: 1255 RLKLPSHIRTHEVFNVKHLTPYHGNEG-DGEENSRTNSFYPGEDDVHQLADSYLDKLEKS 1079
             ++LP  +    +FNV  L  +  +E    + NS ++S      DV Q+AD    +LEK 
Sbjct: 1385 VIELPDSMGIFNIFNVADLYEFREDEVIYPDHNSGSSSSEVEGTDVEQMADFIAVELEKG 1444

Query: 1078 KA 1073
            ++
Sbjct: 1445 RS 1446


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score = 1216 bits (3145), Expect = 0.0
 Identities = 624/1392 (44%), Positives = 866/1392 (62%), Gaps = 72/1392 (5%)
 Frame = -2

Query: 5083 EVPENKRVPLVATRLRGRASAWWKQLKITRERRGKQKVTQ-WDDMRKKMREEFLPYNYKR 4907
            E PE+ RV    +     AS WW    I   ++    + Q WD +++ MR  F+P  Y R
Sbjct: 184  EFPESTRVRAATSEFTDFASVWW----IEHGKKNPNNMPQTWDALKRVMRARFVPSYYAR 239

Query: 4906 TLHQRLQNLKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQ------DFQDV 4745
             L  RLQ L+QG +S+ +Y +E    + RC L E+ +  + R++GGL +      D++D 
Sbjct: 240  DLLNRLQQLRQGAKSVEEYYQELQMGLLRCNLEETEDAAMARFLGGLNREIYDIVDYKDY 299

Query: 4744 LNMYDLWDVSDAHQRALLFEKQQQRSRFGQSMIRSF------PSARTQKP----TTSGAP 4595
             NM  L+ ++   +R +   +   ++ F      S+      P+ RT  P    TTS A 
Sbjct: 300  TNMTRLFHLACKAEREVQGRRASAKANFSAGKTSSWQTRTTPPAGRTASPSSTPTTSRAA 359

Query: 4594 TAPI----APKASHPVPSPQISNATNSLR---CFKCNEPGHRASHCPRNSGRSGKQLLIE 4436
              P     A KA+ P PS     +T  +R   C +C   GH    CP       K++L+ 
Sbjct: 360  PPPSSDKSATKAAQPAPSASSMASTGRMRDVQCHRCKGFGHVQRDCP------SKRVLVV 413

Query: 4435 EADAEL----DQNESPIXXXXXXXXXXXEVAGDVG-------EALVIRKSLFTPRDQSES 4289
            + D E     D ++  +                +G       E+L++++ L    +++E 
Sbjct: 414  KNDGEYSSASDFDDDTLALLAADHADNEPPEEHIGAAFADHYESLIVQRVLSAQMEKAEQ 473

Query: 4288 DWLRTNIFRTTCTVEGKICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLSWFKKGG 4109
            +   T +F+T C V+ + C +IID GSC N  S E V KL L  +PHP+PY + W    G
Sbjct: 474  NQRHT-LFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALSTKPHPHPYYIQWLNNSG 532

Query: 4108 EVSVNKRCVVSFSIGKTYKDQVWCDVVPLEACHILLGRPWQYDKDVSHNGRRNTYSFIHN 3929
            +  V K   ++F+IG  Y D V CDVVP++AC+ILLGRPWQ+D+D  H+GR N YSF+++
Sbjct: 533  KAKVTKLVHINFAIG-NYHDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYH 591

Query: 3928 KVKITL------------------------VPSKELGLKPHS---GDNTQLLSLHQFDKA 3830
              KI L                          ++  G KP +        L +    ++ 
Sbjct: 592  DKKIVLHSMSPEDILRDDVAKAAKSKCESDKKAQSDGKKPETINLKPKCLLATKSDINEL 651

Query: 3829 IHDEGIVYMLVSCD-----KSTEKPIPVAVKPLLAEFSDIFPEELPYGLPPLRDIQHQID 3665
            I    + Y LV  D        +  +P AV  +L E+SD+FP+E+P GLPP+R I+HQID
Sbjct: 652  IASPSVAYALVCKDALISLHDMQHSLPPAVANILQEYSDVFPKEVPPGLPPVRGIEHQID 711

Query: 3664 LVPGSILPNRPHYRMSPKEHKELAKQVNELIGKGYIRESISPCGVPALLTPKKDGTWRMC 3485
            L+PG+ LPNR  YR +P+E KE+ +QV+EL+ KGY+RES+SPC VP +L PKKDG+WRMC
Sbjct: 712  LIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSPCAVPVILVPKKDGSWRMC 771

Query: 3484 VDSRAINKITIKYRFPIPRLDDMLDNLCGATTFSKLDLKSGYHQIRVRPGDEWKTAFKTK 3305
            VD RAIN ITI+YR PIPRLDDMLD L G+  FSK+DL+SGYHQIR++ GDEWKTAFKTK
Sbjct: 772  VDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGYHQIRMKLGDEWKTAFKTK 831

Query: 3304 EGLYEWMVMPFGLSNAPSTFMRVMNQILKPFIGKFVVVYFDDILVYSVNASLHMQHLREV 3125
             GLYEW+VMPFGL+NAPSTFMR+MN++L+PFIGKFVVVYFDDIL+YS +   H  HLR V
Sbjct: 832  FGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAV 891

Query: 3124 LIVLRREKMYAQMKKCEFMSPEVLFLGYIITGEGIKVDDSKIQAIVEWPQPTTITEARSF 2945
               LR  +++  ++KC F +  V FLGY++T +GI+VD +K++AI  WP P T+++ RSF
Sbjct: 892  FNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSF 951

Query: 2944 HGLASFYRRFIHHFSTIMAPITNCMKK-IKFEWTREAENCFQEIKARLTVAPILALPNFE 2768
             GLA FYRRF+  FSTI AP+    KK + F W    EN F  +K +LT AP+L LP+F 
Sbjct: 952  LGLAGFYRRFVQDFSTIAAPLNVLTKKGVPFTWGTSQENAFHMLKDKLTHAPLLQLPDFN 1011

Query: 2767 LLFEVHCDASKLGIGAVLSQEGRPVAYYSEKFHGPQLRYSTYDMEFLAVVQTLKHWRHYL 2588
              FE+ CDAS +G+G VL QEG+PVAY+SEK  GP L YSTYD E  A+V+TL+ W+HYL
Sbjct: 1012 KTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYL 1071

Query: 2587 IHRDFVLYSDHEALKHLNSQQKLSSRHAKWAAYIQEFTFSLKHKSGVQNRVADALSRRVS 2408
              ++FV++SDHE+LKH+ SQ KL+ RHAKW  +I+ F + +KHK G +N +ADALSRR +
Sbjct: 1072 WPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYT 1131

Query: 2407 LLTQMHVQVPGFDTFSELYLEDVFFTKVLKELKENHQC-PYIMSNGFLFKGNQLCLPDCS 2231
            LLTQ+  ++ G +T  + Y  D  F  VL   K+      +++++GF+F+ N+LC+P  S
Sbjct: 1132 LLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASS 1191

Query: 2230 LRQQVIKELHA---EGHFGQKKTFQLVSKTYFWPSMRKDIDKYVARCYICQRGKGATSNA 2060
            +R  +++E H     GHFG KKT  +++  +FWP MR+D+ ++VARC  CQ+ K      
Sbjct: 1192 VRLLLLQEAHGGGLMGHFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPH 1251

Query: 2059 GLYMPLPIPQAPWTDVTMDFILGLPRTQRGMDSIFVIVDRFSKMAHFVACRKTMDATHIA 1880
            GLYMPLP+P  PW D++MDF+LGLPRT+RG DSIFV+VDRFSKMAHF+ C KT DA+HIA
Sbjct: 1252 GLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKTDDASHIA 1311

Query: 1879 GLYFKEIVRLHGIPKSITSDRDSKFVSHFWRTLWKLLGTSLQFSSAYHPQTDGQTEVVNR 1700
             L+F+EIVRLHG+P +I SDRD+KF+SHFWRTLW  LGT L FS+  HPQTDGQTEVVNR
Sbjct: 1312 DLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNR 1371

Query: 1699 SLGNLLRCLVGNQPRKWDQALSQAEFAFNRSTNRTTGFSPFEVIYGQNPQTALDLIPISN 1520
            +L  +LR ++    + W++ L   EFA+NRS + TT   PF+++YG  P+  +DL+P+ +
Sbjct: 1372 TLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPS 1431

Query: 1519 VGKTDKKVEELISNLQQIQTQVKSQLEESIAKYKEQADQKRRKVVFDAGDFVWATFTKDR 1340
              K +   ++    + ++    K  +E   AKYK   D+ RR++ F+ GD VW    K+R
Sbjct: 1432 SEKLNFDAKQRAELMLKLHETTKENIERMNAKYKFAGDKGRRELTFEPGDLVWLHLRKER 1491

Query: 1339 HPYGEFNKLSPRKMGPFEIAEKINENAYRLKLPSHIRTHEVFNVKHLTPYHGNEGDGEEN 1160
             P    +KL PR  GPF++  KINENAY++ LP+       FNV  L PY G E + E  
Sbjct: 1492 FPDLRKSKLMPRADGPFKVLAKINENAYKIDLPADFGVSPTFNVADLKPYLGEEDELE-- 1549

Query: 1159 SRTNSFYPGEDD 1124
            SRT     GEDD
Sbjct: 1550 SRTTQMQEGEDD 1561



 Score =  528 bits (1360), Expect = e-146
 Identities = 319/850 (37%), Positives = 466/850 (54%), Gaps = 60/850 (7%)
 Frame = -2

Query: 3361 YHQIRVRPGDEWKT--AFKTKEGLYEWMVMPFGLSNAPSTFMRVMNQILKPFIGKFVVVY 3188
            +H+     GD+  T  +     GLYE+ VM FGL+NAP+ FM +MN++   ++ KFVVV+
Sbjct: 1603 HHKFAATIGDDRATNPSGFASYGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVF 1662

Query: 3187 FDDILVYSVNASLHMQHLREVLIVLRREKMYAQMKKCEFMSPEVLFLGYIITGEGIKVDD 3008
             DDILVYS +   H  HLR VL  LR  ++YA++ KCEF   EV FLG++I+ +G+ VD 
Sbjct: 1663 IDDILVYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVAVDP 1722

Query: 3007 SKIQAIVEWPQPTTITEARSFHGLASFYRRFIHHFSTIMAPITNCMKKI-KFEWTREAEN 2831
              + A+ +W QP T+T+ RSF GLA +YRRFI +FS I  P+T  +KK  KF W+ + E 
Sbjct: 1723 ETVTAVTDWKQPKTVTQIRSFLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEK 1782

Query: 2830 CFQEIKARLTVAPILALPNFELLFEVHCDASKLGIGAVLSQEGRPVAYYSEKFHGPQLRY 2651
             FQ +K +L  +P+L LP+    F V+CDAS  G+G VL QEG  VAY S +    +  Y
Sbjct: 1783 AFQTLKEKLVSSPVLILPDTRKDFMVYCDASPQGLGCVLMQEGHVVAYASRQLWPHEGNY 1842

Query: 2650 STYDMEFLAVVQTLKHWRHYLIHRDFVLYSDHEALKHLNSQQKLSSRHAKWAAYIQEFTF 2471
             T+D+E  AVV  LK WRHYLI     +Y+DH++LK++ +Q  L+ R  +W   I+++  
Sbjct: 1843 PTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDV 1902

Query: 2470 SLKHKSGVQNRVADALSRRVSLLT-----------------QMHVQVPGF---------- 2372
             + +  G  N VADALSR+    T                  + +   GF          
Sbjct: 1903 GIHYHPGKANVVADALSRKSHCNTLGVRGIPPELNQQMEALNLSIVSRGFLATLEAKPTL 1962

Query: 2371 -DTFSELYLEDVFFTKVLKELKENHQCPYIMS-NGFLFKGNQLCLPDC-SLRQQVIKELH 2201
             D   E    D     +LK +K+     +I   +G L+  N++C+PD   L+Q +++E H
Sbjct: 1963 LDQIREAQKNDPDMRGLLKNMKQGKAAGFIEDEHGTLWNRNRVCVPDVRELKQLILQEAH 2022

Query: 2200 AEG---HFGQKKTFQLVSKTYFWPSMRKDIDKYVARCYICQRGKGATSN-AGLYMPLPIP 2033
                  H G  K +  + + Y+W SM+++I ++VA C +CQR K      AGL  PL +P
Sbjct: 2023 ESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVP 2082

Query: 2032 QAPWTDVTMDFILGLPRTQRGMDSIFVIVDRFSKMAHFVACRKTMDATHIAGLYFKEIVR 1853
            +  W ++ MDFI GLP+TQ G DSI+V+VDR +K+A F+  + T     +A LYF  IV 
Sbjct: 2083 EWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVS 2142

Query: 1852 LHGIPKSITSDRDSKFVSHFWRTLWKLLGTSLQFSSAYHPQTDGQTEVVNRSLGNLLRCL 1673
            LHG+PK I SDR+S+F SHFW+ L + LGT L FS+AYHPQTDGQTE +N+ L ++L   
Sbjct: 2143 LHGVPKKIVSDRESQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLHAC 2202

Query: 1672 VGNQPRKWDQALSQAEFAFNRSTNRTTGFSPFEVIYGQNPQTAL--DLIPISNVGKTD-- 1505
            V +  + WD++L  AEF++N S   +   +P+E +YG+  +T L  D +  S V  TD  
Sbjct: 2203 VLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDIL 2262

Query: 1504 ----KKVEELISNLQQIQTQVKSQLEESIAKYKEQADQKRRKVVFDAGDFVWATFTKDR- 1340
                 KV  +  NL+  Q++ KS            AD +RR + F   DFV+   T  R 
Sbjct: 2263 REAEAKVRTIWDNLKVAQSRQKS-----------YADNRRRNLEFAVDDFVYLRVTPLRG 2311

Query: 1339 -HPYGEFNKLSPRKMGPFEIAEKINENAYRLKLPSHI-RTHEVFNVKHLTP---YHGNEG 1175
             H +    KL+PR +GPF I  +  E AY+L+LP+ +   H+VF+V  L         + 
Sbjct: 2312 VHRFQTKGKLAPRFVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQA 2371

Query: 1174 DGEENSRTNSFYPGEDDVHQLADSYLDKLEK---------SKASQKTSSPKQASIRRSSR 1022
            D E+          E  V       LD +E+          K      + ++A+  R + 
Sbjct: 2372 DSEQIEVREDLTYVERPV-----KILDTMERRTRNRVIRFCKVQWSNHAEEEATWERENE 2426

Query: 1021 LKAQTPHLLS 992
            LKA  P L +
Sbjct: 2427 LKAAHPDLFA 2436


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score = 1204 bits (3115), Expect = 0.0
 Identities = 622/1398 (44%), Positives = 867/1398 (62%), Gaps = 78/1398 (5%)
 Frame = -2

Query: 5083 EVPENKRVPLVATRLRGRASAWWKQLKITRERRGKQKVTQ-WDDMRKKMREEFLPYNYKR 4907
            E PEN RV    +     AS WW    I   ++    + Q WD +++ MR  F+P  Y R
Sbjct: 178  EFPENARVRAATSEFTEFASVWW----IEHGKKNPNNMPQTWDALKRVMRARFVPSYYAR 233

Query: 4906 TLHQRLQNLKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQDFQDVLNMYDL 4727
             +  +LQ L+QGT+S+ +Y +E    + RC + E  E  + R++GGL ++ QD+L   D 
Sbjct: 234  DMLNKLQQLRQGTKSVEEYYQELQMGMLRCNIEEGEESAMARFLGGLNREIQDILAYKDY 293

Query: 4726 WDVSDAHQRALLFEKQ-QQRSRFGQSMIRSFPSARTQKPTT---SGAPTAPIAPKASHPV 4559
             +V+     A   E++ Q R    +S + +  S   Q+ TT   +G   AP  P  S P 
Sbjct: 294  ANVTRLFHLACKAEREVQGRRASARSNVSAGKSTPWQQRTTTSMTGRTLAP-TPSPSRPA 352

Query: 4558 PSPQIS-----NATNS-----------------------LRCFKCNEPGHRASHCPR--- 4472
            P P  S     ++TNS                       + C++C   GH    CP    
Sbjct: 353  PPPSSSDKPRASSTNSATKSAQKPAGSASSVASTGRTRDVLCYRCKGYGHVQRDCPNQRV 412

Query: 4471 -----NSGRSGKQLLIEEADAELDQNESPIXXXXXXXXXXXEVAGDVGEALVIRKSLFTP 4307
                 + G S    L E   A L  +++             +   +  E+L++++ L   
Sbjct: 413  LVVKDDGGYSSASDLDEATLALLAADDAGTKEPPEEQIGADD--AEHYESLIVQRVLSAQ 470

Query: 4306 RDQSESDWLRTNIFRTTCTVEGKICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLS 4127
             +++E +  R  +F+T C ++ + C LIID GSC N  S + V KL L  +PHP+PY + 
Sbjct: 471  MEKAEQN-QRHTLFQTKCVIKERSCRLIIDGGSCNNLASSDMVEKLALTTKPHPHPYHIQ 529

Query: 4126 WFKKGGEVSVNKRCVVSFSIGKTYKDQVWCDVVPLEACHILLGRPWQYDKDVSHNGRRNT 3947
            W    G+V V K   ++F+IG +Y+D V CDVVP++AC+ILLGRPWQ+D D  H+GR N 
Sbjct: 530  WLNNSGKVKVTKLVRINFAIG-SYRDVVDCDVVPMDACNILLGRPWQFDSDCMHHGRSNQ 588

Query: 3946 YSFIHNKVKITLVP-----------SKELGLKPHSGDNTQLLSLHQ-------------- 3842
            YS IH+  KI L+P           +K    K  +  N +++  ++              
Sbjct: 589  YSLIHHDKKIILLPMSPEAIVRDDVAKATKAKTENNKNIKVVGNNKDGIKLKGHCLLATK 648

Query: 3841 --FDKAIHDEGIVYMLVSCD-----KSTEKPIPVAVKPLLAEFSDIFPEELPYGLPPLRD 3683
               ++      + Y LV  D     +  +  +P  +  +L E+SD+FP E+P GLPP+R 
Sbjct: 649  TDVNELFASTTVAYALVCKDALISIQDMQHSLPPVITNILQEYSDVFPSEIPEGLPPIRG 708

Query: 3682 IQHQIDLVPGSILPNRPHYRMSPKEHKELAKQVNELIGKGYIRESISPCGVPALLTPKKD 3503
            I+HQIDL+PG+ LPNR  YR +P+E KE+ +QV EL+ KGY+RES+SPC VP +L PKKD
Sbjct: 709  IEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCAVPVILVPKKD 768

Query: 3502 GTWRMCVDSRAINKITIKYRFPIPRLDDMLDNLCGATTFSKLDLKSGYHQIRVRPGDEWK 3323
            GTWRMCVD RAIN ITI+YR PIPRLDDMLD L GA  FSK+DL+SGYHQIR++ GDEWK
Sbjct: 769  GTWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGAIVFSKVDLRSGYHQIRMKLGDEWK 828

Query: 3322 TAFKTKEGLYEWMVMPFGLSNAPSTFMRVMNQILKPFIGKFVVVYFDDILVYSVNASLHM 3143
            TAFKTK GLYEW+VMPFGL+NAPSTFMR+MN++L+ FIGKFVVVYFDDIL+YS +   H+
Sbjct: 829  TAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGKFVVVYFDDILIYSKSMDEHV 888

Query: 3142 QHLREVLIVLRREKMYAQMKKCEFMSPEVLFLGYIITGEGIKVDDSKIQAIVEWPQPTTI 2963
             H+R V   LR  +++  ++KC F +  V FLGY++T +GI+VD +K++AI  WP P TI
Sbjct: 889  DHMRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHGWPMPKTI 948

Query: 2962 TEARSFHGLASFYRRFIHHFSTIMAPITNCMKK-IKFEWTREAENCFQEIKARLTVAPIL 2786
            T+ RSF GLA FYRRF+  FSTI AP+    KK + F W +  E+ F  +K +LT AP+L
Sbjct: 949  TQVRSFLGLAGFYRRFVKDFSTIAAPLNELTKKGVHFSWGKVQEHAFNVLKDKLTHAPLL 1008

Query: 2785 ALPNFELLFEVHCDASKLGIGAVLSQEGRPVAYYSEKFHGPQLRYSTYDMEFLAVVQTLK 2606
             LP+F   FE+ CDAS +G+G VL QEG+PVAY+SEK  G  L YSTYD E  A+V+TL+
Sbjct: 1009 QLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGSVLNYSTYDKELYALVRTLE 1068

Query: 2605 HWRHYLIHRDFVLYSDHEALKHLNSQQKLSSRHAKWAAYIQEFTFSLKHKSGVQNRVADA 2426
             W+HYL  ++FV++SDHE+LKH+ SQ KL+ RHAKW  +I+ F + +KHK G +N +ADA
Sbjct: 1069 TWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADA 1128

Query: 2425 LSRRVSLLTQMHVQVPGFDTFSELYLEDVFFTKVLKELKENHQC-PYIMSNGFLFKGNQL 2249
            LSRR +LL Q+  ++ G +T  + Y+ D  F  VL   K+      YI+S+GF+F+ N+L
Sbjct: 1129 LSRRYTLLNQLDYKIFGLETIKDQYVHDADFKDVLLHCKDGKGWNKYIVSDGFVFRANKL 1188

Query: 2248 CLPDCSLRQQVIKELHA---EGHFGQKKTFQLVSKTYFWPSMRKDIDKYVARCYICQRGK 2078
            C+P  S+R  +++E H     GHFG KKT  +++  +FWP MR+D+ + VARC  CQ+ K
Sbjct: 1189 CIPASSVRLLLLQEAHGGGLMGHFGAKKTEDILAGHFFWPKMRRDVVRLVARCTTCQKAK 1248

Query: 2077 GATSNAGLYMPLPIPQAPWTDVTMDFILGLPRTQRGMDSIFVIVDRFSKMAHFVACRKTM 1898
               +  GLY+PLP+P APW D++MDF+LGLPRT++G DS+FV+VDRFSKMAHF+ C KT 
Sbjct: 1249 SRLNPHGLYLPLPVPSAPWEDISMDFVLGLPRTRKGRDSVFVVVDRFSKMAHFIPCHKTD 1308

Query: 1897 DATHIAGLYFKEIVRLHGIPKSITSDRDSKFVSHFWRTLWKLLGTSLQFSSAYHPQTDGQ 1718
            DATHIA L+F+EIVRLHG+P +I SDRD+KF+SHFWRTLW  LGT L FS+  HPQTDGQ
Sbjct: 1309 DATHIADLFFREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQ 1368

Query: 1717 TEVVNRSLGNLLRCLVGNQPRKWDQALSQAEFAFNRSTNRTTGFSPFEVIYGQNPQTALD 1538
            TEVVNR+L  +LR ++    + W+  L   EFA+NRS + TT   PF+++YG  P+  +D
Sbjct: 1369 TEVVNRTLSTMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPID 1428

Query: 1537 LIPISNVGKTDKKVEELISNLQQIQTQVKSQLEESIAKYKEQADQKRRKVVFDAGDFVWA 1358
            L+P+ +  K +         + ++    K  +E   A+YK  +D+ R+++ F+ GD VW 
Sbjct: 1429 LMPLPSSEKLNFDATRRAELMLKLHETTKENIERMNARYKFASDKGRKEINFEPGDLVWL 1488

Query: 1357 TFTKDRHPYGEFNKLSPRKMGPFEIAEKINENAYRLKLPSHIRTHEVFNVKHLTPYHGNE 1178
               K+R P    +KL PR  GPF++ EKIN+NAYRL LP+       FN+  L PY G E
Sbjct: 1489 HLRKERFPELRKSKLLPRADGPFKVLEKINDNAYRLDLPADFGVSPTFNIADLKPYLGEE 1548

Query: 1177 GDGEENSRTNSFYPGEDD 1124
             + E  SRT     GE+D
Sbjct: 1549 VELE--SRTTQMQEGEND 1564


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score = 1191 bits (3081), Expect = 0.0
 Identities = 625/1455 (42%), Positives = 880/1455 (60%), Gaps = 91/1455 (6%)
 Frame = -2

Query: 5101 EVLEFKEVPENKRVPLVATRLRGRASAWWKQLKITRERRGKQKVTQWDDMRKKMREEFLP 4922
            ++       E K+V + A    G A  WW+Q+   RE  G+  V  W +M+++MR  F+P
Sbjct: 165  KIFRLHNYSERKKVAMAALEFDGYALIWWEQMLNEREEAGQGDVRSWAEMKREMRARFVP 224

Query: 4921 YNYKRTLHQRLQNLKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQDFQDVL 4742
             +Y+R L  +LQNLKQG+ S+ +Y +E    + R  + E  E+ + R++ GL ++ Q ++
Sbjct: 225  KHYRRDLFDKLQNLKQGSLSVDEYYKEMEKAMIRANVYEDEEQSIARFMSGLHRNIQRIV 284

Query: 4741 NMYDLWDVSDAHQRALLFEKQQQR------------------SRF---GQSMIRSFPS-- 4631
                  ++ +   +A   E+Q Q+                  S+F   G     +F S  
Sbjct: 285  EFQQYRNLIELVHQASKAERQLQQDMKSNRGVSFSTKNAASGSKFTSRGSGNRGAFSSSS 344

Query: 4630 --ARTQKPTTSGAP--TAPIAPKASHPVPSPQISNATNS--LRCFKCNEPGHRASHCPRN 4469
              AR+    TS      AP   K +    S  + ++T S  ++CFKC   GH A  CP N
Sbjct: 345  GGARSSNYGTSSGKDLAAPNERKNAANTSSTSVGSSTKSSGIQCFKCGGRGHVARECPNN 404

Query: 4468 S----GRSGKQLLIEEADAELDQNESPIXXXXXXXXXXXEVAGDVGEALVIRKSLFTPRD 4301
                    G+     E + E  + E+ +               + G ALV+ + L     
Sbjct: 405  RTIVVNDQGEYESTSEEEQEDSEEENNLEKDICEF--------ESGAALVVTQILSVQMS 456

Query: 4300 QSESDWLRTNIFRTTCTVEGKICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLSWF 4121
             +E+   R N+F+T   V+ K+  +IID GSC N  S+E V KL LK+  HP+PY + W 
Sbjct: 457  DAENGQ-RHNLFQTRAKVQDKVVKVIIDGGSCHNLASKEMVEKLGLKLLKHPHPYHVQWL 515

Query: 4120 KKGGEVSVNKRCVVSFSIGKTYKDQVWCDVVPLEACHILLGRPWQYDKDVSHNGRRNTYS 3941
               G + + +R  V F IG+ Y D + CDV P+  CH+LLGRPWQYD+   H GR N Y+
Sbjct: 516  NNSGSIKIAQRVKVPFKIGE-YIDTMECDVAPMTVCHMLLGRPWQYDRSSLHCGRTNQYT 574

Query: 3940 FIHNKVKITLVP--------------------SKELGLK-----PHS------------- 3875
                  ++ L P                    S + G K     PH              
Sbjct: 575  IKWKGKELILKPMTPQQILAEHLQKSSEVRNESAKEGQKNNLSAPHKSVSESHKPNMRDN 634

Query: 3874 ----GDNTQLLSL--HQFDKAIHDEGIVYMLVSCDKSTEK----PIPVAVKPLLAEFSDI 3725
                G+N  +++      D   + E ++++LV  D          +P  V  +L E+ D+
Sbjct: 635  KKREGENLVMIATKSEMRDVRRNPEQVLFILVCKDTLLSANDLTSVPSVVARVLQEYEDV 694

Query: 3724 FPEELPYGLPPLRDIQHQIDLVPGSILPNRPHYRMSPKEHKELAKQVNELIGKGYIRESI 3545
            FPEE P GLPPLR I+HQIDL+PG+ LPNRP YR +P+E KE+ +QV  L+ KGY+RES+
Sbjct: 695  FPEETPVGLPPLRGIEHQIDLIPGATLPNRPAYRTNPEETKEIQRQVQALLDKGYVRESL 754

Query: 3544 SPCGVPALLTPKKDGTWRMCVDSRAINKITIKYRFPIPRLDDMLDNLCGATTFSKLDLKS 3365
            SPC VP +L PKKDG+WRMCVD RAIN IT++YR PIPRLDDMLD L G+  FSK+DL+S
Sbjct: 755  SPCAVPVILVPKKDGSWRMCVDCRAINNITVRYRHPIPRLDDMLDELSGSMIFSKIDLRS 814

Query: 3364 GYHQIRVRPGDEWKTAFKTKEGLYEWMVMPFGLSNAPSTFMRVMNQILKPFIGKFVVVYF 3185
            G+HQIR++ GDEWKTAFKTK GLYEW+VMPFGL+NAPSTFMR+MN +L+ FIGKFVVVYF
Sbjct: 815  GFHQIRMKIGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGKFVVVYF 874

Query: 3184 DDILVYSVNASLHMQHLREVLIVLRREKMYAQMKKCEFMSPEVLFLGYIITGEGIKVDDS 3005
            DDIL+YS     H+ H+++VL VLR+E++YA ++KC F + +V+FLG++++G GI+VD+S
Sbjct: 875  DDILIYSKTLEEHVAHIQQVLDVLRKEQLYANLEKCTFCTDQVVFLGFVVSGLGIQVDES 934

Query: 3004 KIQAIVEWPQPTTITEARSFHGLASFYRRFIHHFSTIMAPITNCMKK-IKFEWTREAENC 2828
            K++AI +WP P  +++ +SF GLA FYRRF+  FSTI AP+    KK + F+W    E  
Sbjct: 935  KVKAIKDWPTPENVSQVKSFRGLAGFYRRFVRGFSTIAAPLNELTKKGVAFQWGEPQEKA 994

Query: 2827 FQEIKARLTVAPILALPNFELLFEVHCDASKLGIGAVLSQEGRPVAYYSEKFHGPQLRYS 2648
            FQE+K RL+  P+L LP+F   FEV CDAS +GIG VL Q G+PVAY+SEK  G QL YS
Sbjct: 995  FQELKKRLSEGPLLVLPDFTKTFEVECDASGIGIGGVLMQNGQPVAYFSEKLGGAQLNYS 1054

Query: 2647 TYDMEFLAVVQTLKHWRHYLIHRDFVLYSDHEALKHLNSQQKLSSRHAKWAAYIQEFTFS 2468
             YD E  A+V+ L+ W+HYL  ++FV++SDHEALK+L  Q KL+ RHAKW  +I+ F + 
Sbjct: 1055 VYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKGQAKLNRRHAKWVEFIETFPYV 1114

Query: 2467 LKHKSGVQNRVADALSRRVSLLTQMHVQVPGFDTFSELYLEDVFFTKVLKELKENHQC-P 2291
            +K+K G +N VADALSR+  LL Q+ V+V G ++  ELY  D+ F++   +         
Sbjct: 1115 VKYKKGKENIVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEK 1174

Query: 2290 YIMSNGFLFKGNQLCLPDCSLRQQVIKELHA---EGHFGQKKTFQLVSKTYFWPSMRKDI 2120
            Y + +GFLF+ N+LC+P CS+R  +++E HA    GHFG +KT+ +++  ++WP MR+D+
Sbjct: 1175 YHIHDGFLFRANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPKMRRDV 1234

Query: 2119 DKYVARCYICQRGKGATSNAGLYMPLPIPQAPWTDVTMDFILGLPRTQRGMDSIFVIVDR 1940
             + V RC  C + K   +  GLY PLP+P APW D++MDF+LGLPRT+RG DSIFV+VDR
Sbjct: 1235 QRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIFVVVDR 1294

Query: 1939 FSKMAHFVACRKTMDATHIAGLYFKEIVRLHGIPKSITSDRDSKFVSHFWRTLWKLLGTS 1760
            FSKMAHF+ C K+ DA+HIA L+F EIVRLHG+PK+I SDRD+KF+S+FW+TLW  LGT 
Sbjct: 1295 FSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTR 1354

Query: 1759 LQFSSAYHPQTDGQTEVVNRSLGNLLRCLVGNQPRKWDQALSQAEFAFNRSTNRTTGFSP 1580
            L FS+  HPQTDGQTEVVNR+L  LLR L+    ++W++ L   EFA+NR+ + TT   P
Sbjct: 1355 LLFSTTCHPQTDGQTEVVNRTLSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCP 1414

Query: 1579 FEVIYGQNPQTALDLIPISNVGKTDKKVEELISNLQQIQTQVKSQLEESIAKYKEQADQK 1400
            FEV+YG  P + +DL+P+    ++D +  +  + +++I  + K  +E+    Y   A++ 
Sbjct: 1415 FEVVYGFKPLSPIDLLPLPLQERSDMEASKRATYVKKIHEKTKEAIEKRSKYYAAWANKN 1474

Query: 1399 RRKVVFDAGDFVWATFTKDRHPYGEFNKLSPRKMGPFEIAEKINENAYRLKLPSHIRTHE 1220
            R+KV F+ GD VW    KDR P    +KL PR  GPF +  KIN+NAY+++LP       
Sbjct: 1475 RKKVTFEPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFRVLSKINDNAYKIELPEDYGVSS 1534

Query: 1219 VFNVKHLTPYHGNEGDGEENSRTNSFYPGEDD-----VHQLADSYLDKLEKSKASQKTSS 1055
             FNV  LTP+ G E    E+SR+  F  GEDD     VH  + +        + S  T  
Sbjct: 1535 TFNVADLTPFFGLE--DSESSRSTPFQEGEDDEDIPTVHATSST-------KQPSSNTKD 1585

Query: 1054 PKQASIRRSSRLKAQ 1010
              Q  + RS   K Q
Sbjct: 1586 TIQGPLTRSRAKKLQ 1600


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score = 1188 bits (3074), Expect = 0.0
 Identities = 617/1409 (43%), Positives = 852/1409 (60%), Gaps = 89/1409 (6%)
 Frame = -2

Query: 5083 EVPENKRVPLVATRLRGRASAWWKQLKITRERRGKQKVTQWDDMRKKMREEFLPYNYKRT 4904
            + PE +RVP         A  WW +       R       W  ++  MR  ++P  Y+  
Sbjct: 206  QYPEERRVPAAVCAFTSFACVWWSE-----HCRLYPIPATWAALKTAMRTRWVPPYYQHE 260

Query: 4903 LHQRLQNLKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQDFQDVLNMYDLW 4724
            L Q+LQ L+QG  S+ +Y +E    + RC + E +E +L R++GGL ++ Q +L   D  
Sbjct: 261  LLQKLQRLRQGKNSVEEYYQELQTGMIRCGIVEENEAMLARFMGGLNREIQTILEYKDYT 320

Query: 4723 DVSDAHQRALLFEKQQQ------RSRFGQSMIRSF----------------PSARTQKPT 4610
            +++     A   E++ Q      R+ F      S+                PSA T    
Sbjct: 321  NITRLFHLACKAEREVQDRQALARTNFSAGRPSSWTPRASSTSTRSATPAPPSAATSNRD 380

Query: 4609 TSGAPTAPIAPKASHPVPSPQISNA------TNSLRCFKCNEPGHRASHCP--------R 4472
            T     +P++ K++   P+   S++      T+ + C +C   GH A  CP         
Sbjct: 381  TIKQAQSPLSAKSTPSGPAKSSSSSMASTGQTHDIICRRCKGGGHYARECPSKRVMIVSE 440

Query: 4471 NSGRSGKQLLIEEADAELDQNESPIXXXXXXXXXXXEVAGDVGEALVIRKSLFTPRDQSE 4292
            + G        EE  A + +++                  D  E LV ++ L     Q+E
Sbjct: 441  DGGYESASDYDEETLALITRDKHGGDDSDHETQYMAPEDADRYECLVAQRVLSVQVTQAE 500

Query: 4291 SDWLRTNIFRTTCTVEGKICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLSWFKKG 4112
             +  R N+F T   V+ +   +IID GSC N  S E V KL L   PHP+PY + WF   
Sbjct: 501  QNQ-RHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLSLITRPHPHPYYIQWFNNS 559

Query: 4111 GEVSVNKRCVVSFSIGKTYKDQVWCDVVPLEACHILLGRPWQYDKDVSHNGRRNTYSFIH 3932
            G+V V +   V FSI  TY D V CDVVP++AC +LLGRPWQ+DK+  H+ R+N Y+ +H
Sbjct: 560  GKVKVTRTVRVHFSIS-TYADYVDCDVVPMQACSLLLGRPWQFDKNSVHHDRKNLYTLVH 618

Query: 3931 NKVKITLVP-----------------------------SKELGLKPHSGDNTQ------- 3860
                ITL+P                             +KE   +  S +N Q       
Sbjct: 619  KDKNITLLPMTPESILKDDINRANKAKQEKNKSENQIVAKEFEQQMQSNNNKQSSVACEI 678

Query: 3859 -------LLSLHQFDKAIHDEGIVYMLVSCD-----KSTEKPIPVAVKPLLAEFSDIFPE 3716
                   L +    D     + + Y  V  +     +     +P AV  +L EF+D+FP+
Sbjct: 679  KLKSACLLATKSDIDDLDFSKSVCYAFVCKEALFSFEDVPSSLPPAVTNILQEFTDVFPQ 738

Query: 3715 ELPYGLPPLRDIQHQIDLVPGSILPNRPHYRMSPKEHKELAKQVNELIGKGYIRESISPC 3536
            ++P GLPP+R I+HQIDL+PG+ LPNR  YR +P+E KE+ +QV EL+ KGYIRES+SPC
Sbjct: 739  DVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDKGYIRESLSPC 798

Query: 3535 GVPALLTPKKDGTWRMCVDSRAINKITIKYRFPIPRLDDMLDNLCGATTFSKLDLKSGYH 3356
             VP +L PKKDGT RMCVD R IN ITI+YR PIPRLDDMLD L G+T FSK+DL+SGYH
Sbjct: 799  AVPIILVPKKDGTSRMCVDCRGINNITIRYRHPIPRLDDMLDELSGSTIFSKVDLRSGYH 858

Query: 3355 QIRVRPGDEWKTAFKTKEGLYEWMVMPFGLSNAPSTFMRVMNQILKPFIGKFVVVYFDDI 3176
            QIR++ GDEWKT FKTK GLYEW+VMPFGL+NAPSTFMR+MN++L+ FIG+FVVVYFDDI
Sbjct: 859  QIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDI 918

Query: 3175 LVYSVNASLHMQHLREVLIVLRREKMYAQMKKCEFMSPEVLFLGYIITGEGIKVDDSKIQ 2996
            L+YS +   H++HLR V I LR  +++  + KC F +  V FLGY++T +GI+VD +KI+
Sbjct: 919  LIYSKSLEEHLEHLRAVFIALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIE 978

Query: 2995 AIVEWPQPTTITEARSFHGLASFYRRFIHHFSTIMAPITNCMKK-IKFEWTREAENCFQE 2819
            AI  WP P T+T+ RSF GLA FYRRF+  FSTI AP+    KK + F W    E  F  
Sbjct: 979  AIESWPHPKTVTQVRSFLGLAGFYRRFVRDFSTIAAPLNEVTKKDVPFVWGTAQEEAFTV 1038

Query: 2818 IKARLTVAPILALPNFELLFEVHCDASKLGIGAVLSQEGRPVAYYSEKFHGPQLRYSTYD 2639
            +K +LT AP+L LPNF   FE+ CDAS +G+G VL Q+G+PVAY+SEKF GP L YSTYD
Sbjct: 1039 LKDKLTYAPLLQLPNFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKFSGPSLNYSTYD 1098

Query: 2638 MEFLAVVQTLKHWRHYLIHRDFVLYSDHEALKHLNSQQKLSSRHAKWAAYIQEFTFSLKH 2459
             E  A+V+TL+ W+HYL  ++FV++SDHE+LKH+ SQ KL+ RHAKW  +I+ F + +KH
Sbjct: 1099 KELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKH 1158

Query: 2458 KSGVQNRVADALSRRVSLLTQMHVQVPGFDTFSELYLEDVFFTKVLKELKENHQC-PYIM 2282
            K G +N +ADALSRR ++L+Q+  ++ G +T  + Y+ D  F  VL+  KE      +++
Sbjct: 1159 KKGKENVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDAEFKDVLQNCKEGRTWNKFVL 1218

Query: 2281 SNGFLFKGNQLCLPDCSLRQQVIKELHA---EGHFGQKKTFQLVSKTYFWPSMRKDIDKY 2111
            ++GF+F+ N+LC+P  S+R  +++E H     GHFG KKT  +++  +FWP MR+D++++
Sbjct: 1219 NDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGVKKTEDILATHFFWPKMRRDVERF 1278

Query: 2110 VARCYICQRGKGATSNAGLYMPLPIPQAPWTDVTMDFILGLPRTQRGMDSIFVIVDRFSK 1931
            VARC  CQR K   +  GLYMPLP+P  PW D++MDF+LGLPRT++G DSIFV+VDRFSK
Sbjct: 1279 VARCTTCQRAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSK 1338

Query: 1930 MAHFVACRKTMDATHIAGLYFKEIVRLHGIPKSITSDRDSKFVSHFWRTLWKLLGTSLQF 1751
            MAHF+ C K+ DA ++A L+F+EI+RLHG+P +I SDRD+KF+SHFWR LW  LG  L F
Sbjct: 1339 MAHFIPCHKSDDAVNVADLFFREIIRLHGVPNTIVSDRDTKFLSHFWRCLWAKLGNKLLF 1398

Query: 1750 SSAYHPQTDGQTEVVNRSLGNLLRCLVGNQPRKWDQALSQAEFAFNRSTNRTTGFSPFEV 1571
            S+  HPQTDGQTEVVNR+L  +LR ++ N  + W++ L   EFA+NRS + TT   PFE+
Sbjct: 1399 STTCHPQTDGQTEVVNRTLSTMLRAVLKNNKKMWEECLPHIEFAYNRSLHSTTKMCPFEI 1458

Query: 1570 IYGQNPQTALDLIPISNVGKTDKKVEELISNLQQIQTQVKSQLEESIAKYKEQADQKRRK 1391
            +YG  P+  +DL+P+ +  K +   +E    + +I    K  +E   AKYK   D+ R+ 
Sbjct: 1459 VYGFLPRAPIDLLPLPSSEKVNFDAKERSELILKIHELTKENIERMNAKYKLARDKGRKH 1518

Query: 1390 VVFDAGDFVWATFTKDRHPYGEFNKLSPRKMGPFEIAEKINENAYRLKLPSHIRTHEVFN 1211
            VVF  GD VW    KDR P    +KL PR  GPF++ EKIN+NAY+L+LP+       FN
Sbjct: 1519 VVFAPGDLVWLHLRKDRFPNLRKSKLMPRADGPFKVLEKINDNAYKLELPADFGVSPTFN 1578

Query: 1210 VKHLTPYHGNEGDGEENSRTNSFYPGEDD 1124
            +  L PY G E   E  SRT SF  GEDD
Sbjct: 1579 IADLKPYLGEE--DELPSRTTSFQEGEDD 1605


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score = 1188 bits (3073), Expect = 0.0
 Identities = 617/1411 (43%), Positives = 860/1411 (60%), Gaps = 91/1411 (6%)
 Frame = -2

Query: 5083 EVPENKRVPLVATRLRGRASAWWKQLKITRERRGKQKVTQWDDMRKKMREEFLPYNYKRT 4904
            + PENKRV    +     AS WW +   +      Q    WD M++ MR  F+P  + R 
Sbjct: 186  DFPENKRVRAATSEFTDFASIWWSEFVRSNPNNTPQT---WDAMKRVMRARFVPSYHARD 242

Query: 4903 LHQRLQNLKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQDFQDVLNMYDLW 4724
            L  +LQ L+QG +S+ +Y +     + RC L E+ +  + R++GGL ++ QD+L   +  
Sbjct: 243  LLHKLQQLRQGNKSVEEYYQALQTGMLRCGLVENDDAGMARFMGGLNREIQDILAYKEYN 302

Query: 4723 DVSDAHQRALLFEKQQQ------RSRFGQSMIRSFPSARTQKPTTSGA------------ 4598
             ++     A   E++ Q      R+        S+ S+    P+T  A            
Sbjct: 303  SINRLFHLACKAEREVQGRRASFRTNISAGRASSWTSSNVAAPSTRAAAPSSSNNKLRPS 362

Query: 4597 ----------PTAPIAPKASHPVPSPQISNATNSLRCFKCNEPGHRASHCPR-------- 4472
                      PT  +A   S    S   S  T  ++C +C   GH    CP         
Sbjct: 363  TTNSTPCPSEPTRGVAATPSKSSSSVASSGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRA 422

Query: 4471 NSGRSGKQLLIEEADAELDQNESPIXXXXXXXXXXXEV-AGDVGEALVIRKSLFTPRDQS 4295
            + G S    L EE  A L  N +                A +  E+LV+++ L    +++
Sbjct: 423  DGGYSSASDLDEETYALLATNNAGKGDAPHQDEEHIGAEAAEHYESLVVQRVLSAQMERA 482

Query: 4294 ESDWLRTNIFRTTCTVEGKICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLSWFKK 4115
            E +   T +F+T C ++ + C +IID GSC N  S E V KL L  +PHP PY + W   
Sbjct: 483  EQNQRHT-LFQTKCVIKERSCRVIIDRGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNS 541

Query: 4114 GGEVSVNKRCVVSFSIGKTYKDQVWCDVVPLEACHILLGRPWQYDKDVSHNGRRNTYSFI 3935
             G+V V +   V F+IG +Y D + CDVVP++AC I LGRPWQ+DKD  H G+ N YSF+
Sbjct: 542  SGKVKVTRLVRVHFAIG-SYHDSINCDVVPMQACSIFLGRPWQFDKDSLHFGKSNQYSFV 600

Query: 3934 HNKVKITLVP-SKELGLKPH--------SGDNTQ---LLSLHQFDK-------------- 3833
            HN  K+ L P S E+ LK          + ++T+   L++ ++ +K              
Sbjct: 601  HNGKKLVLHPMSPEVILKDELARASKQKNQEHTRSEHLIAANELEKHKKKPTNSVQNNKN 660

Query: 3832 AIHDEGIVYMLVSCD----------------KSTEKPI---PVAVKP----LLAEFSDIF 3722
             I  +G  ++    D                K T  PI   P+++ P    LL E++DIF
Sbjct: 661  EIKLKGSCFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLLQEYADIF 720

Query: 3721 PEELPYGLPPLRDIQHQIDLVPGSILPNRPHYRMSPKEHKELAKQVNELIGKGYIRESIS 3542
            P+E+P GLPP+R I+HQIDL+PG+ LPNR  YR +P+E KE+ +QV EL+ KGY+RES+S
Sbjct: 721  PKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLS 780

Query: 3541 PCGVPALLTPKKDGTWRMCVDSRAINKITIKYRFPIPRLDDMLDNLCGATTFSKLDLKSG 3362
            PC +P LL PKKDG+WRMCVD RAIN ITI+YR PIPRLDDMLD L G+  FSK+DL+SG
Sbjct: 781  PCSIPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSG 840

Query: 3361 YHQIRVRPGDEWKTAFKTKEGLYEWMVMPFGLSNAPSTFMRVMNQILKPFIGKFVVVYFD 3182
            YHQIR++ GDEWKTAFKTK GLYEW+VMPFGL+NAPSTF+R+MN++L+ FIG+FVVVYFD
Sbjct: 841  YHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFIRLMNEVLRAFIGRFVVVYFD 900

Query: 3181 DILVYSVNASLHMQHLREVLIVLRREKMYAQMKKCEFMSPEVLFLGYIITGEGIKVDDSK 3002
            DIL+YS +   H  HLR V   LR E+++  ++KC F +  V FLGY++T +GI+VD +K
Sbjct: 901  DILIYSRSIEDHHGHLRAVFDALRDERLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAK 960

Query: 3001 IQAIVEWPQPTTITEARSFHGLASFYRRFIHHFSTIMAPITNCMKK-IKFEWTREAENCF 2825
            ++AI  WP PTTIT+ RSF GLA FYRRF+  FSTI AP+    K+ + F W     N F
Sbjct: 961  VEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAF 1020

Query: 2824 QEIKARLTVAPILALPNFELLFEVHCDASKLGIGAVLSQEGRPVAYYSEKFHGPQLRYST 2645
              +K +LT AP+L LP+F   FE+ CDAS +G+G VL QEG+P+ Y+SEK  GP L YST
Sbjct: 1021 DTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPIEYFSEKLSGPSLNYST 1080

Query: 2644 YDMEFLAVVQTLKHWRHYLIHRDFVLYSDHEALKHLNSQQKLSSRHAKWAAYIQEFTFSL 2465
            YD E  A+V+TL+ W+HYL  ++FV++SDHE+LKH+ SQ KL+ RHAKW  +I+ F + +
Sbjct: 1081 YDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYVI 1140

Query: 2464 KHKSGVQNRVADALSRRVSLLTQMHVQVPGFDTFSELYLEDVFFTKVLKELKENHQC-PY 2288
            KHK G +N +ADALSRR ++L+Q+  ++ G +T  E Y  D  F  VL   KE      +
Sbjct: 1141 KHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKF 1200

Query: 2287 IMSNGFLFKGNQLCLPDCSLRQQVIKELHA---EGHFGQKKTFQLVSKTYFWPSMRKDID 2117
            +++NGF+F+ N+LC+P  S+R  +++E H     GHFG KKT  +++  +FWP MR+D++
Sbjct: 1201 VLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPKMRRDVE 1260

Query: 2116 KYVARCYICQRGKGATSNAGLYMPLPIPQAPWTDVTMDFILGLPRTQRGMDSIFVIVDRF 1937
            ++VARC  CQ+ K   +  GLYMPLP+P  PW D++MDF+LGLPRT++G DSIFV+VDRF
Sbjct: 1261 RFVARCTTCQKAKLRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRF 1320

Query: 1936 SKMAHFVACRKTMDATHIAGLYFKEIVRLHGIPKSITSDRDSKFVSHFWRTLWKLLGTSL 1757
            SKMAHF+ C K+ DATH+A L+F+EIVRLHG+P +I SDRD+KF+SHFWRTLW  LGT L
Sbjct: 1321 SKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKL 1380

Query: 1756 QFSSAYHPQTDGQTEVVNRSLGNLLRCLVGNQPRKWDQALSQAEFAFNRSTNRTTGFSPF 1577
             FS+  HPQTDGQTEVVNR+L  +LR ++    + W++ L   EFA+NRS + TT   PF
Sbjct: 1381 LFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPF 1440

Query: 1576 EVIYGQNPQTALDLIPISNVGKTDKKVEELISNLQQIQTQVKSQLEESIAKYKEQADQKR 1397
            E++YG  P+  +DL+P+    + +   +     + ++    K  +E    KYK    + +
Sbjct: 1441 EIVYGLLPRAPIDLLPLPTSERVNFDAKYHAELMLKLHETTKENIERMNIKYKLAGSKGK 1500

Query: 1396 RKVVFDAGDFVWATFTKDRHPYGEFNKLSPRKMGPFEIAEKINENAYRLKLPSHIRTHEV 1217
            + V F+ GD VW    KDR P    +KL PR  GPF++ +KIN+N Y+L+LP+       
Sbjct: 1501 KHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNTYKLELPADFGVSPT 1560

Query: 1216 FNVKHLTPYHGNEGDGEENSRTNSFYPGEDD 1124
            FN+  L PY G E + E  SRT     GEDD
Sbjct: 1561 FNIADLKPYLGEEDELE--SRTTQMQEGEDD 1589


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score = 1182 bits (3059), Expect = 0.0
 Identities = 617/1411 (43%), Positives = 856/1411 (60%), Gaps = 91/1411 (6%)
 Frame = -2

Query: 5083 EVPENKRVPLVATRLRGRASAWWKQLKITRERRGKQKVTQWDDMRKKMREEFLPYNYKRT 4904
            + PENK V    +     AS WW +   +      Q    WD M++ MR  F+P  + R 
Sbjct: 186  DFPENKCVRAATSEFTDFASIWWSEFVRSNPNNTPQT---WDAMKRVMRARFVPSYHARD 242

Query: 4903 LHQRLQNLKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQDFQDVLNMYDLW 4724
            L  +LQ L+QG +S+ +Y +     + RC L E+ +  + R++GGL ++ QD+L   +  
Sbjct: 243  LLHKLQQLRQGNKSVEEYYQALQTGMLRCGLVENDDAGMARFMGGLNREIQDILTYKEYN 302

Query: 4723 DVSDAHQRALLFEKQQQ------RSRFGQSMIRSFPSARTQKPTTSGA------------ 4598
             ++     A   E++ Q      R+        S+ S+    P+T  A            
Sbjct: 303  SINHLFHLACKAEREVQGRRASFRTNISAGRASSWTSSNAAAPSTRAAAPSSSSNKLRPS 362

Query: 4597 ----------PTAPIAPKASHPVPSPQISNATNSLRCFKCNEPGHRASHCPR-------- 4472
                      PT  +A   S    S   S  T  ++C +C   GH    CP         
Sbjct: 363  TTNSTPCPSEPTRGVAATPSKTSSSVASSGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRA 422

Query: 4471 NSGRSGKQLLIEEADAELDQNESPIXXXXXXXXXXXEV-AGDVGEALVIRKSLFTPRDQS 4295
            + G S    L  E  A L  N +                A +  E+LV+++ L    +++
Sbjct: 423  DGGYSSASDLDGETYALLATNNAREGDAPHQDEEHIGAEAAEHYESLVVQRVLSAQMERA 482

Query: 4294 ESDWLRTNIFRTTCTVEGKICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLSWFKK 4115
            E +   T +F+T C ++ + C +IID GSC N  S E V KL L  +PHP PY + W   
Sbjct: 483  EQNQRHT-LFQTKCVIKERSCRVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNS 541

Query: 4114 GGEVSVNKRCVVSFSIGKTYKDQVWCDVVPLEACHILLGRPWQYDKDVSHNGRRNTYSFI 3935
             G+V V +   V F+IG +Y D + CDVVP++AC +LLGRPWQ+DKD  H G+ N YSF+
Sbjct: 542  SGKVKVTRLVRVHFAIG-SYHDSINCDVVPMQACSMLLGRPWQFDKDSLHFGKSNQYSFV 600

Query: 3934 HNKVKITLVP-SKELGLKPH--------SGDNTQ---LLSLHQFDK-------------- 3833
            HN  K+ L P S E+ LK          + ++T+   L++ ++ +K              
Sbjct: 601  HNGKKLVLHPMSPEVILKDELARASKQKNQEHTRSEHLIAANELEKHKKKPTNSVQNNKN 660

Query: 3832 AIHDEGIVYMLVSCD----------------KSTEKPI---PVAVKP----LLAEFSDIF 3722
             I  +G  ++    D                K T  PI   P+++ P    LL E++DIF
Sbjct: 661  EIKLKGSCFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLLQEYADIF 720

Query: 3721 PEELPYGLPPLRDIQHQIDLVPGSILPNRPHYRMSPKEHKELAKQVNELIGKGYIRESIS 3542
            P+E+P GLPP+R I+HQIDL+PG+ LPNR  YR +P+E KE+ +QV EL+ KGY+RES+S
Sbjct: 721  PKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLS 780

Query: 3541 PCGVPALLTPKKDGTWRMCVDSRAINKITIKYRFPIPRLDDMLDNLCGATTFSKLDLKSG 3362
            PC VP LL PKKDG+WRMCVD RAIN ITI+YR PIPRLDDMLD L G+  FSK+DL+SG
Sbjct: 781  PCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSG 840

Query: 3361 YHQIRVRPGDEWKTAFKTKEGLYEWMVMPFGLSNAPSTFMRVMNQILKPFIGKFVVVYFD 3182
            YHQIR++ GDEWKTAFKTK GLYEW+VMPFGL+NAPSTFMR+MN++L+ FIG+FVVVYFD
Sbjct: 841  YHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFD 900

Query: 3181 DILVYSVNASLHMQHLREVLIVLRREKMYAQMKKCEFMSPEVLFLGYIITGEGIKVDDSK 3002
            DIL+YS +   H  HLR V   LR  +++  ++KC F +  V FL Y++T +GI+VD +K
Sbjct: 901  DILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLSYVVTPQGIEVDQAK 960

Query: 3001 IQAIVEWPQPTTITEARSFHGLASFYRRFIHHFSTIMAPITNCMKK-IKFEWTREAENCF 2825
            ++AI  WP PTTIT+ RSF GLA FYRRF+  FSTI AP+    K+ + F W     N F
Sbjct: 961  VEAIHNWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAF 1020

Query: 2824 QEIKARLTVAPILALPNFELLFEVHCDASKLGIGAVLSQEGRPVAYYSEKFHGPQLRYST 2645
              +K +LT AP+L LP+F   FE  CDAS +G+G VL QEG+PVAY+SEK  GP L YST
Sbjct: 1021 DTLKDKLTHAPLLQLPDFNKTFEHECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYST 1080

Query: 2644 YDMEFLAVVQTLKHWRHYLIHRDFVLYSDHEALKHLNSQQKLSSRHAKWAAYIQEFTFSL 2465
            YD E  A+V+TL+ W+HYL  ++FV++SDHE+LKH+ SQ KL+ RHAKW  +I+ F + +
Sbjct: 1081 YDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYVI 1140

Query: 2464 KHKSGVQNRVADALSRRVSLLTQMHVQVPGFDTFSELYLEDVFFTKVLKELKENHQC-PY 2288
            KHK G +N +ADALSRR ++L+Q+  ++ G +T  E Y  D  F  VL   KE      +
Sbjct: 1141 KHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKNVLLNCKEGRTWNKF 1200

Query: 2287 IMSNGFLFKGNQLCLPDCSLRQQVIKELHA---EGHFGQKKTFQLVSKTYFWPSMRKDID 2117
            +++NGF+F+ N+LC+P  S+R  +++E H     GHFG KKT  +++  +FWP MR+D++
Sbjct: 1201 VLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPKMRRDVE 1260

Query: 2116 KYVARCYICQRGKGATSNAGLYMPLPIPQAPWTDVTMDFILGLPRTQRGMDSIFVIVDRF 1937
            ++VARC  CQ+ K   +  GLYMPLP+P  PW D++MDF+LGLPRT++G DSIFV+VDRF
Sbjct: 1261 RFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRF 1320

Query: 1936 SKMAHFVACRKTMDATHIAGLYFKEIVRLHGIPKSITSDRDSKFVSHFWRTLWKLLGTSL 1757
            SKMAHF+ C K+ DATH+A L+F+EIVRLHG+P +I SDRD+KF+SHFWRTLW  LGT  
Sbjct: 1321 SKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKF 1380

Query: 1756 QFSSAYHPQTDGQTEVVNRSLGNLLRCLVGNQPRKWDQALSQAEFAFNRSTNRTTGFSPF 1577
             FS+  HPQTDGQTEVVNR+L  +LR ++    + W++ L   EFA+NRS + TT   PF
Sbjct: 1381 LFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPF 1440

Query: 1576 EVIYGQNPQTALDLIPISNVGKTDKKVEELISNLQQIQTQVKSQLEESIAKYKEQADQKR 1397
            E++YG  P+  +DL+P     + +   +     + ++    K  +E    KYK    + +
Sbjct: 1441 EIVYGLLPRAPIDLLPHPTSERVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKGK 1500

Query: 1396 RKVVFDAGDFVWATFTKDRHPYGEFNKLSPRKMGPFEIAEKINENAYRLKLPSHIRTHEV 1217
            + V F+ GD VW    KDR P    +KL PR  GPF++ +KIN+NAY+L+LP+       
Sbjct: 1501 KHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNAYKLELPADFGVSPT 1560

Query: 1216 FNVKHLTPYHGNEGDGEENSRTNSFYPGEDD 1124
            FN+  L PY G E + E  SRT     GEDD
Sbjct: 1561 FNIADLKPYLGEEDELE--SRTTQMQEGEDD 1589


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score = 1179 bits (3050), Expect = 0.0
 Identities = 615/1409 (43%), Positives = 857/1409 (60%), Gaps = 91/1409 (6%)
 Frame = -2

Query: 5083 EVPENKRVPLVATRLRGRASAWWKQLKITRERRGKQKVTQWDDMRKKMREEFLPYNYKRT 4904
            + PENKRV    +     AS WW +   +      Q    WD M++ MR  F+P  + R 
Sbjct: 186  DFPENKRVRAATSEFTDFASIWWSEFVRSNPNNTPQT---WDAMKRVMRARFVPSYHARD 242

Query: 4903 LHQRLQNLKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQDFQDVLNMYDLW 4724
            L  +LQ L+QG +S+ +Y +     + RC L E+ +  + R++GGL ++ QD+L   +  
Sbjct: 243  LLHKLQQLRQGNKSVEEYYQALQIGMLRCGLVENDDAGMARFMGGLNREIQDILAYKEYN 302

Query: 4723 DVSDAHQRALLFEKQQQ------RSRFGQSMIRSFPSARTQKPTTSGA------------ 4598
             ++     A   E++ Q      R+        S+ S+    P+T  A            
Sbjct: 303  SINRLFHLACKAEREVQGRRASFRTNISAGCASSWTSSNAAAPSTRAAAPSCSSNKLRPS 362

Query: 4597 ----------PTAPIAPKASHPVPSPQISNATNSLRCFKCNEPGHRASHCPR-------- 4472
                      PT  +A   S    S   S  T  ++C +C   GH    CP         
Sbjct: 363  TTNSTPCPSEPTRGVAATPSKSSSSVASSGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRA 422

Query: 4471 NSGRSGKQLLIEEADAELDQNESPIXXXXXXXXXXXEV-AGDVGEALVIRKSLFTPRDQS 4295
            + G      L EE  A L  N +                A +  E+LV+++ L    +++
Sbjct: 423  DGGYYFDSDLDEETYALLATNNAGEGDAPHQDEEHIRAEAAEHYESLVVQRVLSAQMERA 482

Query: 4294 ESDWLRTNIFRTTCTVEGKICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLSWFKK 4115
            E + L T +F+T C ++ + C +IID GSC N  S E V KL L  +PHP PY + W   
Sbjct: 483  EQNQLHT-LFQTKCVIKERSCHVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNS 541

Query: 4114 GGEVSVNKRCVVSFSIGKTYKDQVWCDVVPLEACHILLGRPWQYDKDVSHNGRRNTYSFI 3935
             G+V V +   V F+IG +Y D + CDVVP++AC +LLGRPWQ+DKD  H G+ N YSF+
Sbjct: 542  SGKVKVTRLVRVHFAIG-SYHDSINCDVVPMQACSMLLGRPWQFDKDSLHFGKSNQYSFV 600

Query: 3934 HNKVKITLVP-SKELGLKPH--------SGDNTQ---LLSLHQFDK-------------- 3833
            HN  K+ L P S E+ LK          + ++T+   L++ ++ +K              
Sbjct: 601  HNGKKLVLHPMSPEVILKDELARASKQKNQEHTRSEHLIAANELEKHKKKPTNSVQNNKN 660

Query: 3832 AIHDEGIVYMLVSCD----------------KSTEKPI---PVAVKP----LLAEFSDIF 3722
             I  +G  ++    D                K T  PI   P++++P    LL E++DIF
Sbjct: 661  EIKLKGSCFIATKSDLDEVDTDTVFCYALVCKETLFPIEDTPISLRPPVTNLLQEYADIF 720

Query: 3721 PEELPYGLPPLRDIQHQIDLVPGSILPNRPHYRMSPKEHKELAKQVNELIGKGYIRESIS 3542
            P+E+P GLPP+R I+HQIDL+PG+ LPNR  YR +P+E KE+ +QV EL+ KGY+RES+S
Sbjct: 721  PKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLS 780

Query: 3541 PCGVPALLTPKKDGTWRMCVDSRAINKITIKYRFPIPRLDDMLDNLCGATTFSKLDLKSG 3362
            PC VP LL PKKDG+WRMCVD RAIN ITI+YR PIPRLDDMLD L G+  FSK+DL+SG
Sbjct: 781  PCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSG 840

Query: 3361 YHQIRVRPGDEWKTAFKTKEGLYEWMVMPFGLSNAPSTFMRVMNQILKPFIGKFVVVYFD 3182
            YHQIR++ GDEWKTAFKTK GLYEW+VMPFGL+NAPSTFMR+MN++L+ FIG+FVVVYFD
Sbjct: 841  YHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFD 900

Query: 3181 DILVYSVNASLHMQHLREVLIVLRREKMYAQMKKCEFMSPEVLFLGYIITGEGIKVDDSK 3002
            DIL+YS +   H  HLR V   LR  +++  ++KC F +  V FLGY++T +GI+VD +K
Sbjct: 901  DILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAK 960

Query: 3001 IQAIVEWPQPTTITEARSFHGLASFYRRFIHHFSTIMAPITNCMKK-IKFEWTREAENCF 2825
            ++AI  WP PTTIT+ RSF GLA FYRRF+  FSTI AP+    K+ + F W     N F
Sbjct: 961  VEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAF 1020

Query: 2824 QEIKARLTVAPILALPNFELLFEVHCDASKLGIGAVLSQEGRPVAYYSEKFHGPQLRYST 2645
              +K +LT AP+L LP+F   FE+ CDAS +G+G VL QEG+PVAY+SEK  GP L YST
Sbjct: 1021 DTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYST 1080

Query: 2644 YDMEFLAVVQTLKHWRHYLIHRDFVLYSDHEALKHLNSQQKLSSRHAKWAAYIQEFTFSL 2465
            YD E  A+V+TL+ W+HYL  ++FV++SDHE+LKH+ SQ K + RHAKW  +I+ F + +
Sbjct: 1081 YDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKHNRRHAKWVEFIESFPYVI 1140

Query: 2464 KHKSGVQNRVADALSRRVSLLTQMHVQVPGFDTFSELYLEDVFFTKVLKELKENHQC-PY 2288
            KHK G +N +ADALSRR ++L+Q+  ++ G +T  E Y  D  F  VL   KE      +
Sbjct: 1141 KHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKF 1200

Query: 2287 IMSNGFLFKGNQLCLPDCSLRQQVIKELHA---EGHFGQKKTFQLVSKTYFWPSMRKDID 2117
            +++NGF+F+ N+LC+P  S+   +++E H     GHFG KK   +++  +FWP  R+D++
Sbjct: 1201 VLTNGFVFRANKLCIPASSVHMLLLQEAHGGGLMGHFGVKKMEDILADHFFWPKKRRDVE 1260

Query: 2116 KYVARCYICQRGKGATSNAGLYMPLPIPQAPWTDVTMDFILGLPRTQRGMDSIFVIVDRF 1937
            ++VARC  CQ+ K   +  GLYMPLP+P  PW D++MDF+LGLPRT++G DSIFV+VDRF
Sbjct: 1261 RFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRF 1320

Query: 1936 SKMAHFVACRKTMDATHIAGLYFKEIVRLHGIPKSITSDRDSKFVSHFWRTLWKLLGTSL 1757
            SKMAHF+ C K+ DATH+A L+F+EIVRLHG+P +I SDRD+KF+SHFWRTLW  LGT L
Sbjct: 1321 SKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKL 1380

Query: 1756 QFSSAYHPQTDGQTEVVNRSLGNLLRCLVGNQPRKWDQALSQAEFAFNRSTNRTTGFSPF 1577
             FS+  HPQTDGQTEVVNR+L  +LR ++    + W++ L   EFA+NRS + TT   PF
Sbjct: 1381 LFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPF 1440

Query: 1576 EVIYGQNPQTALDLIPISNVGKTDKKVEELISNLQQIQTQVKSQLEESIAKYKEQADQKR 1397
            E++YG  P+  +DL+P+    + +   +     + ++    K  +E    KYK    + +
Sbjct: 1441 EIVYGLLPRAPIDLLPLPTSERVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKGK 1500

Query: 1396 RKVVFDAGDFVWATFTKDRHPYGEFNKLSPRKMGPFEIAEKINENAYRLKLPSHIRTHEV 1217
            + V F+ GD VW    KDR P    +KL PR  GPF++ +KIN+NAY+L+LP+       
Sbjct: 1501 KHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNAYKLELPADFGVSPT 1560

Query: 1216 FNVKHLTPYHGNEGDGEENSRTNSFYPGE 1130
            FN+  L PY G E + E  SRT     GE
Sbjct: 1561 FNIADLKPYLGEEDELE--SRTTQMQEGE 1587


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score = 1165 bits (3014), Expect = 0.0
 Identities = 607/1392 (43%), Positives = 845/1392 (60%), Gaps = 72/1392 (5%)
 Frame = -2

Query: 5083 EVPENKRVPLVATRLRGRASAWWKQLKITRERRGKQKVTQ-WDDMRKKMREEFLPYNYKR 4907
            E PE+ RV    +     AS WW    I   ++    + Q WD +++ MR  F+P  Y R
Sbjct: 184  EFPESTRVRAATSEFTDFASVWW----IEHGKKNPNNMPQTWDALKRVMRARFVPSYYAR 239

Query: 4906 TLHQRLQNLKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQ------DFQDV 4745
             L  RLQ L+Q                      E+ +  + R++GGL +      D++D 
Sbjct: 240  DLLNRLQQLRQE---------------------ETEDAAMARFLGGLNREIYDIVDYKDY 278

Query: 4744 LNMYDLWDVSDAHQRALLFEKQQQRSRFGQSMIRSFPSART----------QKPTTSGAP 4595
             NM  L+ ++   +R +   +   ++ F      S+ +  T            PTTS A 
Sbjct: 279  TNMTRLFHLACKAEREVQGRRASAKANFSAGKTSSWQTRTTPLAGRTASPSSTPTTSRAA 338

Query: 4594 TAPI----APKASHPVPSPQISNATNSLR---CFKCNEPGHRASHCPRNSGRSGKQLLIE 4436
              P     A KA+ P PS     +T  +R   C +C   GH    CP       K++L+ 
Sbjct: 339  PPPSSDKSATKAAQPAPSASSMASTGRMRDVQCHRCKGFGHVQRDCP------SKRVLVV 392

Query: 4435 EADAEL----DQNESPIXXXXXXXXXXXEVAGDVG-------EALVIRKSLFTPRDQSES 4289
            + D E     D ++  +                +G       E+L++++ L    +++E 
Sbjct: 393  KNDGEYSSASDFDDDTLALLAADHADNEPPEEHIGAAFADHYESLIVQRVLSAQMEKAEQ 452

Query: 4288 DWLRTNIFRTTCTVEGKICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLSWFKKGG 4109
            +   T +F+T C V+ + C +IID GSC N  S E V KL L  +PHP+ Y + W    G
Sbjct: 453  NQRHT-LFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALSTKPHPHSYYIQWLNNSG 511

Query: 4108 EVSVNKRCVVSFSIGKTYKDQVWCDVVPLEACHILLGRPWQYDKDVSHNGRRNTYSFIHN 3929
            +  V K   ++F+IG  Y D V CDVVP++AC+ILLGRPWQ+D+D  H+GR N YSF+++
Sbjct: 512  KAKVTKLVHINFAIGN-YHDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYH 570

Query: 3928 KVKITLVP------------------------SKELGLKPHS---GDNTQLLSLHQFDKA 3830
              KI L P                        ++  G KP +        L +    ++ 
Sbjct: 571  DKKIVLHPMSPEDILRDDVAKAAKSKCESDKKAQSDGKKPETINLKPKCLLATKSDINEL 630

Query: 3829 IHDEGIVYMLVSCD-----KSTEKPIPVAVKPLLAEFSDIFPEELPYGLPPLRDIQHQID 3665
            I    + Y LV  D        +  +P AV  +L E+SD+FP+E+P GLPP+R I+HQID
Sbjct: 631  IASPSVAYALVCKDALISLHDMQHSLPPAVANILQEYSDVFPKEVPPGLPPVRGIEHQID 690

Query: 3664 LVPGSILPNRPHYRMSPKEHKELAKQVNELIGKGYIRESISPCGVPALLTPKKDGTWRMC 3485
            L+PG+ LPNR  YR +P+E KE+ +QV+EL+ KGY+RES+SPC VP +L PKKDG+WRMC
Sbjct: 691  LIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSPCAVPVILVPKKDGSWRMC 750

Query: 3484 VDSRAINKITIKYRFPIPRLDDMLDNLCGATTFSKLDLKSGYHQIRVRPGDEWKTAFKTK 3305
            VD RAIN ITI+YR PIPRLDDMLD L G+  FSK++L+SGYHQI ++ GDEWKTAFKTK
Sbjct: 751  VDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVELRSGYHQIHMKLGDEWKTAFKTK 810

Query: 3304 EGLYEWMVMPFGLSNAPSTFMRVMNQILKPFIGKFVVVYFDDILVYSVNASLHMQHLREV 3125
             GLYEW+VMPFGL+NAPSTFMR+MN++L+PFIGKFVVVYFDDIL+YS +   H  HLR V
Sbjct: 811  FGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAV 870

Query: 3124 LIVLRREKMYAQMKKCEFMSPEVLFLGYIITGEGIKVDDSKIQAIVEWPQPTTITEARSF 2945
               LR  +++  ++KC F +  V FLGY++T +GI+VD +K++AI  WP P T+++ RSF
Sbjct: 871  FNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSF 930

Query: 2944 HGLASFYRRFIHHFSTIMAPITNCMKK-IKFEWTREAENCFQEIKARLTVAPILALPNFE 2768
             GLA FY RF+  FSTI AP+    KK + F W    EN F  +K +LT AP+L LP+F 
Sbjct: 931  LGLAGFYCRFVQDFSTIAAPLNALTKKGVPFTWGTSQENAFHMLKHKLTHAPLLQLPDFN 990

Query: 2767 LLFEVHCDASKLGIGAVLSQEGRPVAYYSEKFHGPQLRYSTYDMEFLAVVQTLKHWRHYL 2588
              FE+ CDAS +G+G VL QEG+ VAY+SEK  GP L YSTYD E  A+V+TL+ W+HYL
Sbjct: 991  KTFELECDASGIGLGGVLLQEGKLVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYL 1050

Query: 2587 IHRDFVLYSDHEALKHLNSQQKLSSRHAKWAAYIQEFTFSLKHKSGVQNRVADALSRRVS 2408
              ++FV++SDHE+LKH+ SQ KL+ RHAKW  +I+ F + +KHK G +N +A+ALSRR +
Sbjct: 1051 WPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIANALSRRYT 1110

Query: 2407 LLTQMHVQVPGFDTFSELYLEDVFFTKVLKELKENHQC-PYIMSNGFLFKGNQLCLPDCS 2231
            LLTQ+  ++ G +T  + Y  D  F  VL   K+      +++++GF+F+ N+LC+P  S
Sbjct: 1111 LLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASS 1170

Query: 2230 LRQQVIKELHA---EGHFGQKKTFQLVSKTYFWPSMRKDIDKYVARCYICQRGKGATSNA 2060
            +R  +++E H     GHFG KKT  +++  +FWP MR+D+ ++VARC  CQ+ K      
Sbjct: 1171 VRLLLLQEAHGGGLMGHFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPH 1230

Query: 2059 GLYMPLPIPQAPWTDVTMDFILGLPRTQRGMDSIFVIVDRFSKMAHFVACRKTMDATHIA 1880
            GLYMPLP+P  PW D++MDF+LGLPRT+RG DSIFV+VDRFSKM HF+ C KT DA+HIA
Sbjct: 1231 GLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMVHFIPCHKTDDASHIA 1290

Query: 1879 GLYFKEIVRLHGIPKSITSDRDSKFVSHFWRTLWKLLGTSLQFSSAYHPQTDGQTEVVNR 1700
             L+F+EIVRLHG+P +I SDRD+KF+SHFWRTLW  LGT L FS+  HPQTDGQ EVVNR
Sbjct: 1291 DLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQIEVVNR 1350

Query: 1699 SLGNLLRCLVGNQPRKWDQALSQAEFAFNRSTNRTTGFSPFEVIYGQNPQTALDLIPISN 1520
            +L  +LR ++    + W++ L   EFA NRS + TT   PF+++Y   P+  +DL+P+ +
Sbjct: 1351 TLSTMLRAVLKKNIKMWEECLPHIEFACNRSLHSTTKMCPFQIVYSLLPRAPIDLMPLPS 1410

Query: 1519 VGKTDKKVEELISNLQQIQTQVKSQLEESIAKYKEQADQKRRKVVFDAGDFVWATFTKDR 1340
              K +   ++    + ++    K  +E   AKYK   D+ RR++ F+ GD VW    K+R
Sbjct: 1411 SEKLNFDAKQRAELMLKLHETTKENIERMNAKYKFAGDKGRRELNFEPGDLVWLHLRKER 1470

Query: 1339 HPYGEFNKLSPRKMGPFEIAEKINENAYRLKLPSHIRTHEVFNVKHLTPYHGNEGDGEEN 1160
             P    +KL PR  GPF++  KINENAY++ LP+       FNV  L PY G E + E  
Sbjct: 1471 FPDLRKSKLMPRADGPFKVLAKINENAYKIDLPADFGVSPTFNVADLKPYLGEEDELE-- 1528

Query: 1159 SRTNSFYPGEDD 1124
            SRT     GEDD
Sbjct: 1529 SRTTQMQEGEDD 1540


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score = 1164 bits (3012), Expect = 0.0
 Identities = 616/1409 (43%), Positives = 843/1409 (59%), Gaps = 89/1409 (6%)
 Frame = -2

Query: 5083 EVPENKRVPLVATRLRGRASAWWKQLKITRERRGKQKVTQWDDMRKKMREEFLPYNYKRT 4904
            + PE++RV          A  WW +    R        T W  ++  MR  ++P  Y+R 
Sbjct: 219  QFPEDRRVAAAVCSFTSFACXWWSEY--CRIHHANIPAT-WAALKTAMRTRWVPPYYQRD 275

Query: 4903 LHQRLQNLKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQDFQDVLNMYDLW 4724
            L Q LQ L+QG +S+ +Y +E    + RC + E +E +L R++GGL +D Q +L   D  
Sbjct: 276  LLQNLQRLRQGKKSVEEYYQELQTGMIRCGIVEDNEAMLARFMGGLNRDIQTILEYKDYX 335

Query: 4723 DVSDAHQRALLFEKQQQ------RSRFGQSMIRSFPSARTQKPTTSGAPTAPIAPKAS-- 4568
             ++     A   E++ Q      R+ F      S+    T   T   A   P++  +S  
Sbjct: 336  TITRLFHLACKAEREVQDRQALARTNFSAGRTSSWTPRTTSTSTRPPASAPPVSAASSTR 395

Query: 4567 ---HPVPSPQISNATNS------------------LRCFKCNEPGHRASHCP-------- 4475
                  P+P  + +T S                  + C +C   GH A  CP        
Sbjct: 396  DTRKQAPAPSFAKSTPSGPAQSSSSSTASTGQTHEVICRRCKGGGHYARECPSKRVMIIT 455

Query: 4474 RNSGRSGKQLLIEEADAELDQNESPIXXXXXXXXXXXEVAGDVGEALVIRKSLFTPRDQS 4295
             + G        EE  A +   E  +               D  E+LV ++ L     Q 
Sbjct: 456  EDGGYDSASDYDEETLALIASEERGVADTAQETQYMAADYADRYESLVAQRVLSVQVTQV 515

Query: 4294 ESDWLRTNIFRTTCTVEGKICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLSWFKK 4115
            E +  R N+F T   V+ +   +IID GSC N  S E V KL L   PHP+PY + WF  
Sbjct: 516  EQNQ-RHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLSLTTRPHPHPYYIQWFNN 574

Query: 4114 GGEVSVNKRCVVSFSIGKTYKDQVWCDVVPLEACHILLGRPWQYDKDVSHNGRRNTYSFI 3935
             G+V V +   V FSI  TY D V CDVVP++AC +LLGRPWQ+DK+  H+GR N Y+ +
Sbjct: 575  SGKVKVTRTVRVHFSIA-TYSDFVDCDVVPMQACSVLLGRPWQFDKNSVHHGRTNQYTLV 633

Query: 3934 HNKVKITLVP-SKELGLKP------------HSGDNTQLL-SLHQFDKAIHDEGIVYMLV 3797
            H    ITL+P S E  +K             H  +N  +     Q +K       V   +
Sbjct: 634  HKDQNITLLPMSPEHIMKDDIARASKAKQDLHKSENQIVAKEFEQHNKPNKSSSSVASEI 693

Query: 3796 ----SCDKSTEKPI-------------------------PVAVKP----LLAEFSDIFPE 3716
                 C  +T+  I                         P ++ P    +L EF+D+FP+
Sbjct: 694  KLKSGCLLATKSDITDLDITTSVCYAFVCKEVLFSFEDMPSSLPPAVINILQEFADVFPQ 753

Query: 3715 ELPYGLPPLRDIQHQIDLVPGSILPNRPHYRMSPKEHKELAKQVNELIGKGYIRESISPC 3536
            ++P GLPP+R I+HQIDL+PG+ LPNR  YR +P+E KE+ +QV EL+ KGYIRES+SPC
Sbjct: 754  DVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDKGYIRESLSPC 813

Query: 3535 GVPALLTPKKDGTWRMCVDSRAINKITIKYRFPIPRLDDMLDNLCGATTFSKLDLKSGYH 3356
             VP +L PKKDGT RMCVD R IN ITI+ R PIPRLDDMLD L G+  FSK+DL+SGYH
Sbjct: 814  AVPIILVPKKDGTSRMCVDCRGINNITIRXRHPIPRLDDMLDELSGSIIFSKVDLRSGYH 873

Query: 3355 QIRVRPGDEWKTAFKTKEGLYEWMVMPFGLSNAPSTFMRVMNQILKPFIGKFVVVYFDDI 3176
            QIR++ GDEWKTAFKTK GLYEW+VMPFGL+NAPSTFMR+MN++L+ FIG+FVVVYFDDI
Sbjct: 874  QIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDI 933

Query: 3175 LVYSVNASLHMQHLREVLIVLRREKMYAQMKKCEFMSPEVLFLGYIITGEGIKVDDSKIQ 2996
            L+YS +   H+ HLR V   LR  +++  + KC F +  V FLGY++T +GI+VD +KI+
Sbjct: 934  LIYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIE 993

Query: 2995 AIVEWPQPTTITEARSFHGLASFYRRFIHHFSTIMAPITNCMKK-IKFEWTREAENCFQE 2819
            AI  WPQP T+T+ RSF G A FYRRF+  FSTI AP+    KK + + W    E  F  
Sbjct: 994  AIESWPQPKTVTQVRSFLGXAGFYRRFVRDFSTIAAPLNELTKKDVPYSWGTAQEEAFTV 1053

Query: 2818 IKARLTVAPILALPNFELLFEVHCDASKLGIGAVLSQEGRPVAYYSEKFHGPQLRYSTYD 2639
            +K +LT AP+L LP+F   FE+ CDAS +G+G VL Q+G+PVAY+SEK  GP L YSTYD
Sbjct: 1054 LKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLSGPSLNYSTYD 1113

Query: 2638 MEFLAVVQTLKHWRHYLIHRDFVLYSDHEALKHLNSQQKLSSRHAKWAAYIQEFTFSLKH 2459
             E  A+V+TL+ W+HYL  ++FV++SDHE+LKH+ SQ KL+ RHAKW  +I+ F + +KH
Sbjct: 1114 KELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKH 1173

Query: 2458 KSGVQNRVADALSRRVSLLTQMHVQVPGFDTFSELYLEDVFFTKVLKELKENHQC-PYIM 2282
            K G  N +ADALSRR ++L+Q+  ++ G +T  + Y+ D  F  VL+  +E      +I+
Sbjct: 1174 KKGKDNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNKFII 1233

Query: 2281 SNGFLFKGNQLCLPDCSLRQQVIKELHA---EGHFGQKKTFQLVSKTYFWPSMRKDIDKY 2111
            +NGF+F+ N+LC+P  S+R  +++E H     GHFG KK   +++  +FWP MR+D++++
Sbjct: 1234 NNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFFWPRMRRDVERF 1293

Query: 2110 VARCYICQRGKGATSNAGLYMPLPIPQAPWTDVTMDFILGLPRTQRGMDSIFVIVDRFSK 1931
            VARC  CQ+ K   +  GLYMPLP+P  PW D++MDF+LGLPRT++G DSIFV+VDRFSK
Sbjct: 1294 VARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSK 1353

Query: 1930 MAHFVACRKTMDATHIAGLYFKEIVRLHGIPKSITSDRDSKFVSHFWRTLWKLLGTSLQF 1751
            MAHF+ C K+ DA ++A L+F+EI+RLHG+P +I SDRD+KF+SHFWR LW  LGT L F
Sbjct: 1354 MAHFIPCHKSDDAANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLF 1413

Query: 1750 SSAYHPQTDGQTEVVNRSLGNLLRCLVGNQPRKWDQALSQAEFAFNRSTNRTTGFSPFEV 1571
            S+  HPQTDGQTEVVNRSL  +LR ++ N  + W++ L   EFA+NRS + TT   PFE+
Sbjct: 1414 STTCHPQTDGQTEVVNRSLSTMLRAVLKNNIKLWEECLPHIEFAYNRSLHSTTKMCPFEI 1473

Query: 1570 IYGQNPQTALDLIPISNVGKTDKKVEELISNLQQIQTQVKSQLEESIAKYKEQADQKRRK 1391
            +YG  P+  +DL+PI +  K +   +E    + ++    K  +E   A+YK   D+ R+ 
Sbjct: 1474 VYGFLPRAPIDLLPIPSSEKVNFDAKERAELILKMHELTKENIERMNARYKLAGDKGRKH 1533

Query: 1390 VVFDAGDFVWATFTKDRHPYGEFNKLSPRKMGPFEIAEKINENAYRLKLPSHIRTHEVFN 1211
            VVF  GD VW    KDR P    +KL PR  GPF++ EKIN+NAYRL+LP+       FN
Sbjct: 1534 VVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKINDNAYRLELPADFGVSPTFN 1593

Query: 1210 VKHLTPYHGNEGDGEENSRTNSFYPGEDD 1124
            +  L PY G E   E  SRT S   GEDD
Sbjct: 1594 IADLKPYLGEE--DELPSRTTSVQEGEDD 1620


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score = 1160 bits (3002), Expect = 0.0
 Identities = 617/1409 (43%), Positives = 842/1409 (59%), Gaps = 89/1409 (6%)
 Frame = -2

Query: 5083 EVPENKRVPLVATRLRGRASAWWKQLKITRERRGKQKVTQWDDMRKKMREEFLPYNYKRT 4904
            + PE++RV          A  WW +    R        T W  ++  MR  ++P  Y+R 
Sbjct: 216  QFPEDRRVAAAVCSFTSFACIWWSEY--CRIHHANIPAT-WAALKTAMRTRWVPPYYQRD 272

Query: 4903 LHQRLQNLKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQDFQDVLNMYDLW 4724
            L Q LQ L+QG +S+ +Y +E    + RC + E +E +L R++GGL +D Q +L   D  
Sbjct: 273  LLQNLQRLRQGKKSVEEYYQELQTGMIRCGIVEDNEAMLARFMGGLNRDIQTILEYKDYN 332

Query: 4723 DVSDAHQRALLFEKQQQ------RSRFGQSMIRSFPSARTQKPTTSGAPTAPIAPKAS-- 4568
             ++     A   E++ Q      R+ F      S+    T   T   A   P++   S  
Sbjct: 333  TITRLFHLACKAEREVQDRQALARTNFSAGRTSSWTPRTTSTSTRPPASAPPVSAANSTR 392

Query: 4567 ---HPVPSPQISNATNS------------------LRCFKCNEPGHRASHCP-------- 4475
                  P+P  + +T S                  + C +C   GH A  CP        
Sbjct: 393  DTRKQAPAPSFAKSTPSGPAQSSSSSTASTGQTHEVICRRCKGGGHYARECPSKRVMIIT 452

Query: 4474 RNSGRSGKQLLIEEADAELDQNESPIXXXXXXXXXXXEVAGDVGEALVIRKSLFTPRDQS 4295
             + G        EE  A +   E  +               D  E+LV ++ L     Q 
Sbjct: 453  EDGGYDSASDYDEETLALIASEERGVXDTAQETQYMAADYADRYESLVAQRVLSVQVTQV 512

Query: 4294 ESDWLRTNIFRTTCTVEGKICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLSWFKK 4115
            E +  R N+F T   V+ +   +IID GSC N  S E V KL L   PHP+PY + WF  
Sbjct: 513  EQNQ-RHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLSLTTRPHPHPYYIQWFNN 571

Query: 4114 GGEVSVNKRCVVSFSIGKTYKDQVWCDVVPLEACHILLGRPWQYDKDVSHNGRRNTYSFI 3935
             G+V V +   V FSI  TY D V CDVVP++AC +LLGRPWQ+DK+  H+GR N Y+ +
Sbjct: 572  SGKVKVTRTVRVHFSIA-TYSDFVDCDVVPMQACSVLLGRPWQFDKNSVHHGRTNQYTLV 630

Query: 3934 HNKVKITLVP-SKELGLKP------------HSGDNTQLL-SLHQFDKAIHDEGIVYMLV 3797
            H    ITL+P S E  +K             H  +N  +     Q +K       V   +
Sbjct: 631  HKDQNITLLPMSPEHIMKDDIARASKAKQDLHKSENQIVAKEFEQHNKPNKSSSSVASEI 690

Query: 3796 ----SCDKSTEKPI-------------------------PVAVKP----LLAEFSDIFPE 3716
                 C  +T+  I                         P ++ P    +L EF+D+FP+
Sbjct: 691  KLKSGCLLATKSDITDLDITTSVCYAFVCKEVLFSFEDMPSSLPPAVINILQEFADVFPQ 750

Query: 3715 ELPYGLPPLRDIQHQIDLVPGSILPNRPHYRMSPKEHKELAKQVNELIGKGYIRESISPC 3536
            ++P GLPP+R I+HQIDL+PG+ LPNR  YR +P+E KE+ +QV EL+ KGYIRES+SPC
Sbjct: 751  DVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDKGYIRESLSPC 810

Query: 3535 GVPALLTPKKDGTWRMCVDSRAINKITIKYRFPIPRLDDMLDNLCGATTFSKLDLKSGYH 3356
             VP +L PKKDGT RMCVD R IN ITI+YR PIPRLDDMLD L G+  FSK+DL+SGYH
Sbjct: 811  AVPIILVPKKDGTSRMCVDCRGINNITIRYRHPIPRLDDMLDELSGSIIFSKVDLRSGYH 870

Query: 3355 QIRVRPGDEWKTAFKTKEGLYEWMVMPFGLSNAPSTFMRVMNQILKPFIGKFVVVYFDDI 3176
            QIR++ GDEWKTAFKTK GLYEW+VMPFGL+NAPSTFMR+MN++L+ FIG+FVVVYFDDI
Sbjct: 871  QIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDI 930

Query: 3175 LVYSVNASLHMQHLREVLIVLRREKMYAQMKKCEFMSPEVLFLGYIITGEGIKVDDSKIQ 2996
            L+YS +   H+ HLR V   LR  +++  + KC F +  V FLGY++T +GI+VD +KI+
Sbjct: 931  LIYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIE 990

Query: 2995 AIVEWPQPTTITEARSFHGLASFYRRFIHHFSTIMAPITNCMKK-IKFEWTREAENCFQE 2819
            AI  WPQP T+T+ RSF GLA FYRRF+  FSTI AP+    KK + + W    E  F  
Sbjct: 991  AIESWPQPKTVTQVRSFLGLAGFYRRFVRDFSTIAAPLNELTKKDVPYSWGTAQEEAFTV 1050

Query: 2818 IKARLTVAPILALPNFELLFEVHCDASKLGIGAVLSQEGRPVAYYSEKFHGPQLRYSTYD 2639
            +K +LT AP+L LP+F   FE+ CDAS +G+G VL Q+G+PVAY+SEK  GP L YSTYD
Sbjct: 1051 LKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLSGPSLNYSTYD 1110

Query: 2638 MEFLAVVQTLKHWRHYLIHRDFVLYSDHEALKHLNSQQKLSSRHAKWAAYIQEFTFSLKH 2459
             E  A+V+TL+ W+HYL  ++FV++SDHE+LKH+ SQ KL+ RHAKW  +I+ F + +K 
Sbjct: 1111 KELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKD 1170

Query: 2458 KSGVQNRVADALSRRVSLLTQMHVQVPGFDTFSELYLEDVFFTKVLKELKENHQC-PYIM 2282
            K G  N +ADALSRR ++L+Q+  ++ G +T  + Y+ D  F  VL+  +E      +I+
Sbjct: 1171 KKGKDNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNKFII 1230

Query: 2281 SNGFLFKGNQLCLPDCSLRQQVIKELHA---EGHFGQKKTFQLVSKTYFWPSMRKDIDKY 2111
            +NGF+F+ N+LC+P  S+R  +++E H     GHFG KK   +++  +FWP MR+D++++
Sbjct: 1231 NNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFFWPRMRRDVERF 1290

Query: 2110 VARCYICQRGKGATSNAGLYMPLPIPQAPWTDVTMDFILGLPRTQRGMDSIFVIVDRFSK 1931
            VARC  CQ+ K   +  GLYMPLP+P  PW D++MDF+LGLPRT++G DSIFV+VDRFSK
Sbjct: 1291 VARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSK 1350

Query: 1930 MAHFVACRKTMDATHIAGLYFKEIVRLHGIPKSITSDRDSKFVSHFWRTLWKLLGTSLQF 1751
            MAHF+ C K+ DA ++A L+F+EI+RLHG+P +I SDRD+KF+SHFWR LW  LGT L F
Sbjct: 1351 MAHFIPCHKSDDAANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLF 1410

Query: 1750 SSAYHPQTDGQTEVVNRSLGNLLRCLVGNQPRKWDQALSQAEFAFNRSTNRTTGFSPFEV 1571
            S+  HPQTDGQTEVVNRSL  +LR ++    + W++ L   EFA+NRS + TT   PFE+
Sbjct: 1411 STTCHPQTDGQTEVVNRSLSTMLRAVLKTNLKLWEECLPHIEFAYNRSLHSTTKMCPFEI 1470

Query: 1570 IYGQNPQTALDLIPISNVGKTDKKVEELISNLQQIQTQVKSQLEESIAKYKEQADQKRRK 1391
            +YG  P+  +DL+PI +  K +   +E    + ++    K  +E   A+YK   D+ R+ 
Sbjct: 1471 VYGFLPRAPIDLLPIPSSEKVNFDAKERAELILKMHELTKENIERMNARYKLAGDKGRKH 1530

Query: 1390 VVFDAGDFVWATFTKDRHPYGEFNKLSPRKMGPFEIAEKINENAYRLKLPSHIRTHEVFN 1211
            VVF  GD VW    KDR P    +KL PR  GPF++ EKIN+NAYRL+LP        FN
Sbjct: 1531 VVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKINDNAYRLELPXDFGVSPTFN 1590

Query: 1210 VKHLTPYHGNEGDGEENSRTNSFYPGEDD 1124
            +  L PY G E   E  SRT S   GEDD
Sbjct: 1591 IADLKPYLGEE--DELPSRTTSVQEGEDD 1617


>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score = 1151 bits (2977), Expect = 0.0
 Identities = 596/1340 (44%), Positives = 828/1340 (61%), Gaps = 14/1340 (1%)
 Frame = -2

Query: 5098 VLEFKEVPENKRVPLVATRLRGRASAWWKQLKITRERRGKQKVTQWDDMRKKMREEFLPY 4919
            V   ++  E  +V +  T  +  A +WW QL  TR R G   +  W  M+  MR+ F+P 
Sbjct: 463  VFNCQQYTEESKVKVAPTEFQNYALSWWDQLVTTRRRAGDYPIESWTQMKTIMRKRFVPS 522

Query: 4918 NYKRTLHQRLQNLKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQDFQDVLN 4739
            +Y R LH RL+NL QG +S+ +Y +E   L+ R ++ E +E ++ R++GGL +D  D L 
Sbjct: 523  HYYRELHNRLRNLVQGNKSVEEYYKEMETLMLRADIQEDNEAIMSRFMGGLNRDIIDRLE 582

Query: 4738 MYDLWDVSDAHQRALLFEKQQQRSRFGQSMIRSFPSARTQKPTTSGAPTAP-IAPKASHP 4562
            +    ++ +   +A++FEKQ +R     S     PS    + +       P I PK    
Sbjct: 583  VQHYVELEELLHKAIMFEKQLKRRSSKPSFGSGKPSYHKDERSGFQKDYKPFIKPKVEDQ 642

Query: 4561 VPSPQ---ISNATNSLRCFKCNEPGHRASHCPRNSGRSGKQLLIEEADAELDQNESPIXX 4391
                +   +   T  ++ FKC   GH AS C      S K+++I +   E++  +  +  
Sbjct: 643  DQKGKGKAVMTRTRDIKGFKCQGHGHYASEC------SNKRIMIIKDTGEIESEDEQLEE 696

Query: 4390 XXXXXXXXXEVAGDVGEALVIRKSLFTPRDQSESDWLRTNIFRTTCTVEGKICSLIIDSG 4211
                       A   GE LV  K+L       E +  R N+F ++C V  K+CSLIID G
Sbjct: 697  SSSTEDYE---APSKGELLVTMKALSVIAKTDEQEQ-RENLFHSSCMVNDKVCSLIIDGG 752

Query: 4210 SCENFISQEAVGKLQLKVEPHPYPYTLSWFKKGGEVSVNKRCVVSFSIGKTYKDQVWCDV 4031
            SC N  S+  V KL LKV  HP PY L W  + GE+SV+++  V  SIGK         +
Sbjct: 753  SCTNVASETMVEKLGLKVMKHPRPYKLQWLNEDGEMSVDRQVKVPLSIGKK------TIL 806

Query: 4030 VPLEACHILLGRPWQYDKDVSHNGRRNTYSFIHNKVKITLVPSKELGLKPHSGDNTQLLS 3851
            VP+    + L +                         +++   K+  +KP    N  +  
Sbjct: 807  VPMTPHEVYLDQ-------------------------LSMKMRKKQTVKP---SNLMINE 838

Query: 3850 LHQFDKAIHDEGIVYMLVSCDKSTEKP---IPVAVKPLLAEFSDIFPEELPYGLPPLRDI 3680
              Q         ++++      S   P   IP  +K LL +++D+FPEE P GLPP+R I
Sbjct: 839  SKQKGSGFQSSKLLFVFKETLMSLTNPEQAIPSKIKFLLQDYTDVFPEENPVGLPPIRGI 898

Query: 3679 QHQIDLVPGSILPNRPHYRMSPKEHKELAKQVNELIGKGYIRESISPCGVPALLTPKKDG 3500
            +HQID VPG+ LPNRP YR +P E KEL KQV EL+ +G+IRES+SPC VP LL PKKDG
Sbjct: 899  EHQIDFVPGASLPNRPAYRTNPVETKELEKQVTELMERGHIRESMSPCAVPVLLVPKKDG 958

Query: 3499 TWRMCVDSRAINKITIKYRFPIPRLDDMLDNLCGATTFSKLDLKSGYHQIRVRPGDEWKT 3320
            +WRMCVD RAIN IT+KYR PIPRLDDMLD L G++ FSK+DLKSGYHQIR++ GDEWKT
Sbjct: 959  SWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSSIFSKVDLKSGYHQIRMKEGDEWKT 1018

Query: 3319 AFKTKEGLYEWMVMPFGLSNAPSTFMRVMNQILKPFIGKFVVVYFDDILVYSVNASLHMQ 3140
            AFKT +GLYEW+VMPFGL+NAPSTFMR+MN +L+ FIG+FV+VYFDDILVYS +   H++
Sbjct: 1019 AFKTIQGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGRFVIVYFDDILVYSKSLEEHVE 1078

Query: 3139 HLREVLIVLRREKMYAQMKKCEFMSPEVLFLGYIITGEGIKVDDSKIQAIVEWPQPTTIT 2960
            HL+ VL VLR+EK+YA +KKC F +  ++FLG++++ +G+KVD+ K++AI EWP P ++ 
Sbjct: 1079 HLKMVLEVLRKEKLYANLKKCTFGTDNLVFLGFVVSTDGVKVDEEKVKAIREWPSPKSVG 1138

Query: 2959 EARSFHGLASFYRRFIHHFSTIMAPITNCMKK-IKFEWTREAENCFQEIKARLTVAPILA 2783
            E RSFHGLA FYRRF+  FST+ AP+T  +KK + F+W +  E+ FQ +K +LT AP+L+
Sbjct: 1139 EVRSFHGLAGFYRRFVKDFSTLAAPLTEVIKKNVGFKWEQAQEDAFQALKEKLTHAPVLS 1198

Query: 2782 LPNFELLFEVHCDASKLGIGAVLSQEGRPVAYYSEKFHGPQLRYSTYDMEFLAVVQTLKH 2603
            LP+F   FE+ CDAS +GIG VL Q+ +P+AY+SEK  G  L Y TYD E  A+V+ L+ 
Sbjct: 1199 LPDFLKTFEIECDASGVGIGVVLMQDKKPIAYFSEKLGGATLNYPTYDKELYALVRALQT 1258

Query: 2602 WRHYLIHRDFVLYSDHEALKHLNSQQKLSSRHAKWAAYIQEFTFSLKHKSGVQNRVADAL 2423
             +HYL  ++FV+++DHE+LKHL  QQKL+ RHA+W  +I+ F + +K+K G  N VADAL
Sbjct: 1259 GQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYKKGKDNVVADAL 1318

Query: 2422 SRRVSLLTQMHVQVPGFDTFSELYLEDVFFTKVLKELKENHQCPYIMSNGFLFKGNQLCL 2243
            SRR  LL+ +  ++ GF+    LY  D  F K+    ++     Y   +GFLF  N+LC+
Sbjct: 1319 SRRYVLLSSLDAKLLGFEHIKSLYANDSDFEKIYSSCEKFAFGKYYRHDGFLFYDNRLCI 1378

Query: 2242 PDCSLRQQVIKELHA---EGHFGQKKTFQLVSKTYFWPSMRKDIDKYVARCYICQRGKGA 2072
            P+ SLR+  I+E H     GHFG  KT +++   + WP M++D+++   RC  C++ K  
Sbjct: 1379 PNSSLRELFIREAHGGGLMGHFGVSKTIKVMQDHFHWPHMKRDVERICERCPTCKQAKAK 1438

Query: 2071 TSNAGLYMPLPIPQAPWTDVTMDFILGLPRTQRGMDSIFVIVDRFSKMAHFVACRKTMDA 1892
            +   GLY PLPIP  PW D++MDF++GLPRT+ G DSIFV+VDRFSKMAHF+ C KT DA
Sbjct: 1439 SQPHGLYTPLPIPSHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDA 1498

Query: 1891 THIAGLYFKEIVRLHGIPKSITSDRDSKFVSHFWRTLWKLLGTSLQFSSAYHPQTDGQTE 1712
             HIA L+F+E+VRLHG+PK+I SDRD+KF+S+FW+TLW  LGT L FS+  HPQTDGQTE
Sbjct: 1499 IHIANLFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTE 1558

Query: 1711 VVNRSLGNLLRCLVGNQPRKWDQALSQAEFAFNRSTNRTTGFSPFEVIYGQNPQTALDLI 1532
            VVNR+L  LLR L+    + W+  L   EFA+N S +  + FSPF+++YG NP T LDL+
Sbjct: 1559 VVNRTLSTLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKFSPFQIVYGFNPTTPLDLM 1618

Query: 1531 PI---SNVGKTDKKVEELISNLQQIQTQVKSQLEESIAKYKEQADQKRRKVVFDAGDFVW 1361
            P+     V    KK  EL+   QQI  Q K  +EE   +Y + A++ R++V+F+ GD VW
Sbjct: 1619 PLPLSERVSLDGKKKAELV---QQIHEQAKKNIEEKTKQYAKHANKSRKEVIFNEGDLVW 1675

Query: 1360 ATFTKDRHPYGEFNKLSPRKMGPFEIAEKINENAYRLKLPSHIRTHEVFNVKHLTPYHGN 1181
                K+R P    +KL  R  GPF++ ++IN NAY L L         FNV  L P+  +
Sbjct: 1676 IHLRKERFPKERKSKLMSRIDGPFKVLKRINNNAYSLDLQGKYNVSNSFNVADLFPFIAD 1735

Query: 1180 EGDGEENSRTNSFYPGEDDV 1121
              D     R+N F  GEDDV
Sbjct: 1736 NTD----LRSNPFQLGEDDV 1751


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score = 1116 bits (2886), Expect = 0.0
 Identities = 579/1349 (42%), Positives = 818/1349 (60%), Gaps = 29/1349 (2%)
 Frame = -2

Query: 5083 EVPENKRVPLVATRLRGRASAWWKQLKITRERRGKQKVTQWDDMRKKMREEFLPYNYKRT 4904
            + PENKRV    +     AS WW +   +      Q    WD M++ MR  F+P  + R 
Sbjct: 186  DFPENKRVRAATSEFTDFASIWWSEFVRSNPNNTPQT---WDAMKRVMRARFVPSYHARD 242

Query: 4903 LHQRLQNLKQGTRSIHDYTEEFYNLVSRCELGESSEELLDRYIGGLKQDFQDVLNMYDLW 4724
            L  +LQ L+QG +S+ +Y +     + RC L E+ +  + R++G L ++ QD+L   +  
Sbjct: 243  LLHKLQQLRQGNKSVEEYYQALQIGMLRCGLVENDDAGMARFMGELNREIQDILAYKEYN 302

Query: 4723 DVSDAHQRALLFEKQQQ--RSRFGQSMIRSFPSARTQK--PTTSGAPTAPIAP-KASHPV 4559
             ++     A   E++ Q  R+ F  ++  + PS+ + K  P+T+ +   P  P +     
Sbjct: 303  SINRLFHLACKAEREVQGRRASFRTNISAAAPSSSSNKLRPSTTNSTPCPSEPTRGVAAT 362

Query: 4558 PSPQISNA-----TNSLRCFKCNEPGHRASHCPR--------NSGRSGKQLLIEEADAEL 4418
            PS   S+      T  ++C +C   GH    CP         + G S    L EE  A L
Sbjct: 363  PSKSSSSVASLGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDEETYALL 422

Query: 4417 DQNESPIXXXXXXXXXXXEV-AGDVGEALVIRKSLFTPRDQSESDWLRTNIFRTTCTVEG 4241
              N +             +  A +  E+LV+++ L    +++E +   T +F+T C ++ 
Sbjct: 423  ATNNAGEGDAPHQDEEHIKAEAAEHYESLVVQRVLSAQMERAEQNQRHT-LFQTKCVIKE 481

Query: 4240 KICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLSWFKKGGEVSVNKRCVVSFSIGK 4061
            + C +IID GSC N  S E V KL L  +PHP PY + W    G+       +++ +   
Sbjct: 482  RSCRVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKEHTRSEHLIAAN--- 538

Query: 4060 TYKDQVWCDVVPLEACHILLGRPWQYDKDVSHNGRRNTYSFIHNKVKITLVPSKELGLKP 3881
                                        ++  + ++ T S  +NK +I L  S  +  K 
Sbjct: 539  ----------------------------ELEKHKKKPTNSVQNNKNEIKLKGSCFIATKS 570

Query: 3880 HSGDNTQLLSLHQFDKAIHDEGIVYMLVSCD-----KSTEKPIPVAVKPLLAEFSDIFPE 3716
                          D+   D  + Y LV  +     + T   +P  V  LL E++DIFP+
Sbjct: 571  ------------DLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPK 618

Query: 3715 ELPYGLPPLRDIQHQIDLVPGSILPNRPHYRMSPKEHKELAKQVNELIGKGYIRESISPC 3536
            E+P GLPP+R I+HQIDL+PG+ LPNR  YR +P+E KE+ +QV EL+ KGY+RES+SPC
Sbjct: 619  EVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPC 678

Query: 3535 GVPALLTPKKDGTWRMCVDSRAINKITIKYRFPIPRLDDMLDNLCGATTFSKLDLKSGYH 3356
             VP LL PKKDG+WRMCVD RAIN ITI+YR PIPRLDDMLD L G+  FSK+DL SGYH
Sbjct: 679  SVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLCSGYH 738

Query: 3355 QIRVRPGDEWKTAFKTKEGLYEWMVMPFGLSNAPSTFMRVMNQILKPFIGKFVVVYFDDI 3176
            QIR++ GDEWKTAFKTK GLYEW+VMPFGL+NAPSTFMR+MN++L+ FIG+FVVVYFDDI
Sbjct: 739  QIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDI 798

Query: 3175 LVYSVNASLHMQHLREVLIVLRREKMYAQMKKCEFMSPEVLFLGYIITGEGIKVDDSKIQ 2996
            L+YS +   H  HLR V   LR  +++  ++KC F +  V FLGY++T +GI+VD +K++
Sbjct: 799  LIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVE 858

Query: 2995 AIVEWPQPTTITEARSFHGLASFYRRFIHHFSTIMAPITNCMKK-IKFEWTREAENCFQE 2819
            AI  WP PTTIT+ RSF GLA FYR F+  FSTI AP+    K+ + F W     N F  
Sbjct: 859  AIHSWPVPTTITQVRSFLGLAGFYRLFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDT 918

Query: 2818 IKARLTVAPILALPNFELLFEVHCDASKLGIGAVLSQEGRPVAYYSEKFHGPQLRYSTYD 2639
            +K +LT AP+L LP+F   FE+ CDAS +G+G VL QEG+PVAY+SEK  GP L YSTYD
Sbjct: 919  LKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYD 978

Query: 2638 MEFLAVVQTLKHWRHYLIHRDFVLYSDHEALKHLNSQQKLSSRHAKWAAYIQEFTFSLKH 2459
             +  A+V+TL+ W+HYL  ++FV++SDHE+LKH+ SQ KL+ RHAKW  +I+ F + +KH
Sbjct: 979  KQLFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKH 1038

Query: 2458 KSGVQNRVADALSRRVSLLTQMHVQVPGFDTFSELYLEDVFFTKVLKELKENHQC-PYIM 2282
            K G +N + DALSRR ++L+Q+  ++ G +T  E Y  D  F  VL   KE      +++
Sbjct: 1039 KKGKENVIVDALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVL 1098

Query: 2281 SNGFLFKGNQLCLPDCSLRQQVIKELHA---EGHFGQKKTFQLVSKTYFWPSMRKDIDKY 2111
            +NGF+F+ N+LC+P  S+   +++E H     GHFG KKT  +++   FWP MR+D++++
Sbjct: 1099 TNGFVFRANKLCIPASSVHMLLLQEAHGGGLMGHFGVKKTEDILADHLFWPKMRRDVERF 1158

Query: 2110 VARCYICQRGKGATSNAGLYMPLPIPQAPWTDVTMDFILGLPRTQRGMDSIFVIVDRFSK 1931
            VARC  CQ+ K   +  GLYMPLP+P  PW D++MDF+LGLPRT++G DSIFV+VDRFSK
Sbjct: 1159 VARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSK 1218

Query: 1930 MAHFVACRKTMDATHIAGLYFKEIVRLHGIPKSITSDRDSKFVSHFWRTLWKLLGTSLQF 1751
            MAHF+ C K+ DATH+A L+F+EIVRLHG+P +I SDRD+KF+SHFWRTLW  LGT L F
Sbjct: 1219 MAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLF 1278

Query: 1750 SSAYHPQTDGQTEVVNRSLGNLLRCLVGNQPRKWDQALSQAEFAFNRSTNRTTGFSPFEV 1571
            S+  HPQTDGQTEVVNR++  +LR ++    + W++ L   EFA+NRS + TT   PFE+
Sbjct: 1279 STTCHPQTDGQTEVVNRTVSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEI 1338

Query: 1570 IYGQNPQTALDLIPISNVGKTDKKVEELISNLQQIQTQVKSQLEESIAKYKEQADQKRRK 1391
            +YG  P+  +DL+P+  + + +   +     + ++    K  +E    KYK    + ++ 
Sbjct: 1339 VYGLLPRAPIDLLPLPTLERVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKGKKH 1398

Query: 1390 VVFDAGDFVWATFTKDRHPYGEFNKLSPRKMGPFEIAEKINENAYRLKLPSHIRTHEVFN 1211
            V F+ GD VW    KDR P    +KL PR  GPF++ +KIN+NAY+L+LP+       FN
Sbjct: 1399 VAFEPGDLVWLHLRKDRFPNLRKSKLPPRADGPFQVLQKINDNAYKLELPADFGVSPTFN 1458

Query: 1210 VKHLTPYHGNEGDGEENSRTNSFYPGEDD 1124
            +  L PY G E + E  SRT     GEDD
Sbjct: 1459 IADLKPYLGEEDELE--SRTTQMQEGEDD 1485


>ref|XP_007221295.1| hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
            gi|462417929|gb|EMJ22494.1| hypothetical protein
            PRUPE_ppa024499mg, partial [Prunus persica]
          Length = 1364

 Score = 1042 bits (2695), Expect = 0.0
 Identities = 557/1225 (45%), Positives = 744/1225 (60%), Gaps = 22/1225 (1%)
 Frame = -2

Query: 4630 ARTQKPTTS---GAPTAPIAPKASHPVPSPQISNATNSLRCFKCNEPGHRASHCPRNSGR 4460
            ART  P        P+ P AP    P   P +SN  + + CF C+  GH AS CP+ +  
Sbjct: 254  ARTTTPGLKIEFSGPSNPTAP----PTKGPIVSN-NSYIECFHCHAKGHIASRCPQRT-- 306

Query: 4459 SGKQLLIEEADAELDQNESPIXXXXXXXXXXXEVAGDVGEALVIRKSLFTPRDQSESDWL 4280
                 +    D   D                     D+   + + + +++     +S W 
Sbjct: 307  ---LTISASTDDHCDVEIVDPLEGVYDPEIDDCFDDDILHQVSVMRCIYSALALLDS-WK 362

Query: 4279 RTNIFRTTCTVEGKICSLIIDSGSCENFISQEAVGKLQLKVEPHPYPYTLSWFKKGGEVS 4100
            RT+IF T      + C L+IDSGS  N IS+ AV +L LK EPHP+P+ ++W  K  ++ 
Sbjct: 363  RTSIFHTYVPCNNQTCKLVIDSGSTMNVISKSAVTRLNLKPEPHPHPFHVAWVDKT-KLP 421

Query: 4099 VNKRCVVSFSIGKTYKDQVWCDVVPLEACHILLGRPWQYDKDVSHNGRRNTYSFIHNKVK 3920
            V +RC+VS  +G T  + ++ D++P+   H+LLGRPW YD  V + GR NTY+F H    
Sbjct: 422  VTERCLVSLKLG-TCDEDIYLDLLPMNVAHVLLGRPWLYDHCVQNCGRENTYTFQHEGKS 480

Query: 3919 ITLVPSKELGLKPH---------------SGDNTQLLSLHQFDKAIHDEGIVYMLVSCDK 3785
            ITL P+    +KP                SG    LLS  +F+K           +S   
Sbjct: 481  ITLRPANP-AIKPTKTNITTSSPSQTGNVSGHQLALLSYGEFEKE---------KISAAP 530

Query: 3784 STEKPIPVAVKPLLAEFSDIFPEELPYGLPPLRDIQHQIDLVPGSILPNRPHYRMSPKEH 3605
            S ++P P+    LL EFSD+  ++LP  LPP+RDIQH IDLVPGS L N PHYRM+  E 
Sbjct: 531  SYQQPEPL--HQLLNEFSDVMLDDLPNELPPMRDIQHAIDLVPGSQLLNLPHYRMNSSER 588

Query: 3604 KELAKQVNELIGKGYIRESISPCGVPALLTPKKDGTWRMCVDSRAINKITIKYRFPIPRL 3425
             EL  Q+  L+ KG+IR S+S C VP LLTPKKDG+WRMCVDSRAINKIT+KYRFPIPRL
Sbjct: 589  AELNTQIQGLLDKGFIRHSLSSCAVPVLLTPKKDGSWRMCVDSRAINKITVKYRFPIPRL 648

Query: 3424 DDMLDNLCGATTFSKLDLKSGYHQIRVRPGDEWKTAFKTKEGLYEWMVMPFGLSNAPSTF 3245
            + ML+ L G+  FSK+DL+SGYHQIR+R GDEWKTAFKT +GLYEW+VMPFG+SNAPSTF
Sbjct: 649  EAMLEELAGSKWFSKIDLRSGYHQIRIREGDEWKTAFKTPDGLYEWLVMPFGMSNAPSTF 708

Query: 3244 MRVMNQILKPFIGKFVVVYFDDILVYSVNASLHMQHLREVLIVLRREKMYAQMKKCEFMS 3065
            MRVM  +L+P+IGKF+VVYFDDIL+YS +   H+QHLR +  +LR+EK++  +K      
Sbjct: 709  MRVMTHVLRPYIGKFLVVYFDDILIYSHSKEDHLQHLRTIFHMLRQEKLFVNLKNA---- 764

Query: 3064 PEVLFLGYIITGEGIKVDDSKIQAIVEWPQPTTITEARSFHGLASFYRRFIHHFSTIMAP 2885
                             D  K+ AIV WP P+T+TE RSFHGLASFYRRFI  FSTIMAP
Sbjct: 765  -----------------DPDKVHAIVNWPLPSTLTETRSFHGLASFYRRFIPSFSTIMAP 807

Query: 2884 ITNCMKKIKFEWTREAENCFQEIKARLTVAPILALPNFELLFEVHCDASKLGIGAVLSQE 2705
            IT+CMK+ +F WT  A   F+ +K ++T AP+L  P    +FEV CDAS +GIG VLSQE
Sbjct: 808  ITDCMKQGEFRWTHAATRAFEALKQKMTEAPVLRHPELTKVFEVACDASGVGIGGVLSQE 867

Query: 2704 GRPVAYYSEKFHGPQLRYSTYDMEFLAVVQTLKHWRHYLIHRDFVLYSDHEALKHLNSQQ 2525
            G  VAY++EK +  + +YSTYD EF A+V+ L++W++YL+  +FVLYSDH+AL++L+SQ+
Sbjct: 868  GHLVAYFNEKLNEAKQKYSTYDKEFYAIVRALRYWQYYLLPNEFVLYSDHQALRYLHSQR 927

Query: 2524 KLSSRHAKWAAYIQEFTFSLKHKSGVQNRVADALSRRVSLLTQM-HVQVPGFDTFSELYL 2348
             +SSRH KW  Y+Q FTF ++H+ GV N+VADALSR V+   +  HV             
Sbjct: 928  NVSSRHIKWTEYLQIFTFVIRHRPGVDNKVADALSREVTAGNRRDHVD------------ 975

Query: 2347 EDVFFTKVLKELKENHQCPYIMSNGFLFKGNQLCLPDCSLRQQVIKELHA---EGHFGQK 2177
                               +++ +G+LF+G QLC+P  SLR  ++ ELHA    GHFG+ 
Sbjct: 976  -------------------FLLRDGYLFRGTQLCIPRTSLRDFLVWELHAGGLAGHFGKD 1016

Query: 2176 KTFQLVSKTYFWPSMRKDIDKYVARCYICQRGKGATSNAGLYMPLPIPQAPWTDVTMDFI 1997
            KT  LV+  ++WPS+++D+   +A+C  CQ  K    N GLY PLPIP  PW D++MDF+
Sbjct: 1017 KTITLVADRFYWPSLKRDVAHILAQCCTCQLAKARKQNTGLYTPLPIPHTPWKDLSMDFV 1076

Query: 1996 LGLPRTQRGMDSIFVIVDRFSKMAHFVACRKTMDATHIAGLYFKEIVRLHGIPKSITSDR 1817
            LGLP+T RG DSI V+VDRFSKMAHF+ C K  DA+++A L+FKE++RLHG+P SI SDR
Sbjct: 1077 LGLPKTARGHDSILVVVDRFSKMAHFLPCSKAADASYVAKLFFKEVIRLHGLPVSIVSDR 1136

Query: 1816 DSKFVSHFWRTLWKLLGTSLQFSSAYHPQTDGQTEVVNRSLGNLLRCLVGNQPRKWDQAL 1637
            D KFVS+FW+TLWKL GTSL+FSSA+HPQTDGQTEVVNRSLG+LLRCLVG++   WD  L
Sbjct: 1137 DVKFVSYFWKTLWKLFGTSLKFSSAFHPQTDGQTEVVNRSLGDLLRCLVGDKQGNWDLIL 1196

Query: 1636 SQAEFAFNRSTNRTTGFSPFEVIYGQNPQTALDLIPISNVGKTDKKVEELISNLQQIQTQ 1457
              AEFA+N S NRTTG SPFE++YG  P+  +DL P+                       
Sbjct: 1197 PVAEFAYNNSANRTTGKSPFEIVYGVMPRPPIDLAPL----------------------P 1234

Query: 1456 VKSQLEESIAKYKEQADQKRRKVVFDAGDFVWATFTKDRHPYGEFNKLSPRKMGPFEIAE 1277
            + +   ES   + E        + F  GD+V      +R P   F KL  R MG + I  
Sbjct: 1235 IDACPSESATTFAEH-------IHFQEGDYVMVRVCPERFPKHSFKKLHARSMGLYRILR 1287

Query: 1276 KINENAYRLKLPSHIRTHEVFNVKHLTPYHGNEGDGEENSRTNSFYPGEDDVHQLADSYL 1097
            K+  NAY ++LPS +    +FNV  L PY             ++ +  ED+ HQ   S L
Sbjct: 1288 KLGANAYLVELPSDVHISPIFNVSDLFPYR------------DATWITEDEFHQHDPSLL 1335

Query: 1096 DKLEKSKASQKTSSPKQASIRRSSR 1022
             +++   A+ + +  +   I   SR
Sbjct: 1336 RQVQDDLAAAEVTDARPPIIHTYSR 1360