BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sinomenium21_contig00000108
         (3210 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1255   0.0  
ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isof...  1254   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...  1250   0.0  
ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isof...  1249   0.0  
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...  1244   0.0  
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1244   0.0  
ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prun...  1241   0.0  
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...  1239   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1234   0.0  
emb|CBI36559.3| unnamed protein product [Vitis vinifera]             1231   0.0  
gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Mimulus...  1222   0.0  
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1221   0.0  
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1218   0.0  
ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [A...  1201   0.0  
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...  1201   0.0  
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1195   0.0  
emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]     1193   0.0  
ref|XP_006453567.1| hypothetical protein CICLE_v10007333mg [Citr...  1192   0.0  
ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thal...  1192   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1191   0.0  

>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score = 1255 bits (3248), Expect = 0.0
 Identities = 613/827 (74%), Positives = 700/827 (84%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQESKRQKASY 182
            EAWE+  EEYRE+ REMCEKKL PNLPYVK+LFLGWFEPL EAI KEQ  Q +K+QKA+Y
Sbjct: 156  EAWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAY 215

Query: 183  APYIGLLPAEKMAVIVMHKMMGLLMVGPDEGSVRVVQAAVYVGDAIEQEVRIHNFLERSK 362
            AP+I LLPA+KMAVIVMHKMMGL+M+G +EG VRVVQAAV +G AIEQEVRIH+FLE++K
Sbjct: 216  APHIELLPADKMAVIVMHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTK 275

Query: 363  NSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQAKL 542
            N    K +   ++    +E EI R+ V+  I             N+E T  WGRD QAKL
Sbjct: 276  NFERHKTVGHSQEGL--REKEILRKRVKSFIRKKKIIEVQKLVKNEEITP-WGRDTQAKL 332

Query: 543  GSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDPLV 722
            GS LI+LL E A+VQ PVNQ +DC P++ PAFRHT KT+ KE G+K  ++ G IECDPLV
Sbjct: 333  GSRLIELLTETAYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLV 392

Query: 723  RKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPKKQ 902
              GL  TA+HMVIPY+PML+PP+ WKGY KGG+LFLPSYVMRTHG+R+Q DA++SVP++Q
Sbjct: 393  LIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQ 452

Query: 903  MQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLMEIQ 1082
            +QKVF ALDTLG TKWR+N+RVLSVVES+W  GGN+ GLV RE+  +PEKP +EDL EIQ
Sbjct: 453  LQKVFEALDTLGNTKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQ 512

Query: 1083 KWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNH 1262
             WK ++RKAKK N ERH+ RCD E+KLSVARKMKDE+GFYYPHNLDFRGRAYPMH HLNH
Sbjct: 513  NWKWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNH 572

Query: 1263 LSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIFDS 1442
            LSSDLCRGVLEFAEGRPL K+GL WLKI LANLYAGGV KLSYD RL FV+NHLDD+FDS
Sbjct: 573  LSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDS 632

Query: 1443 AERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAAL 1622
            A+ P+ G RWWL AEDPFQCLAAC+NLSEAL+SSSPH V SHLPIHQDGSCNGLQHYAAL
Sbjct: 633  ADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAAL 692

Query: 1623 GRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVDRK 1802
            GR+SLEA+AVNLVAG++PADVYSEIAARV  ++KRD  KDPA+ P A LAK+LI QVDRK
Sbjct: 693  GRNSLEASAVNLVAGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRK 752

Query: 1803 LVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAA 1982
            LVKQTVMTSVYGVTYIGAREQIKRRL E+G+I+D++LLF A+CYAA VT+ ALGE+FQAA
Sbjct: 753  LVKQTVMTSVYGVTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAA 812

Query: 1983 RSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGDCVD 2162
            R IM WLG+CAKVIASENQPV+W TPLGLPV+QPY KSERHLIRTSLQVLALQREG  V 
Sbjct: 813  RDIMAWLGECAKVIASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVV 872

Query: 2163 SKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILRERF 2342
             ++QRTAFPPNFVHSLDGSHMMMTA ACRDAGL FAGVHDSFWTHACD+DKMNQILRE+F
Sbjct: 873  IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKF 932

Query: 2343 VELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            VELY  PILENLLESFQTS PTL FP LP RG+FDL +VLESPYFFN
Sbjct: 933  VELYSMPILENLLESFQTSHPTLTFPPLPDRGNFDLREVLESPYFFN 979


>ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
            gi|508784240|gb|EOY31496.1| DNA/RNA polymerases
            superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score = 1254 bits (3244), Expect = 0.0
 Identities = 616/829 (74%), Positives = 707/829 (85%), Gaps = 2/829 (0%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQE--SKRQKA 176
            EAWEK  EEYREL REMCEKKL PNLPYVK LFLGWFEP+ EAIA+EQ +Q+  SK+ +A
Sbjct: 153  EAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRA 212

Query: 177  SYAPYIGLLPAEKMAVIVMHKMMGLLMVGPDEGSVRVVQAAVYVGDAIEQEVRIHNFLER 356
            +YAP+I LLPA+KMAVIVMHKMMGL+M   + G V+VVQAAV++G AIEQEVRIHNFLE+
Sbjct: 213  AYAPHIELLPADKMAVIVMHKMMGLVMGAQENGFVQVVQAAVHIGVAIEQEVRIHNFLEK 272

Query: 357  SKNSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQA 536
            +KN + RKK  DE Q  + KE EI ++ V  LI             N+E  K WGRDAQA
Sbjct: 273  TKNYQ-RKKTTDEVQGLS-KEKEILKKRVNSLIRRRRLVEVQKLVKNEE-IKPWGRDAQA 329

Query: 537  KLGSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDP 716
            KLGS L++LL E A+VQPP++Q  D  P++ PAFRH  KTI K+PG+K  KR G IECDP
Sbjct: 330  KLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGKKMMKRYGVIECDP 389

Query: 717  LVRKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPK 896
            L+  GL  +A+HM+IPY+PMLVPP+ WKGY KGG+LFLPSYVMRTHG+R+Q DA++ V  
Sbjct: 390  LILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDALKGVHV 449

Query: 897  KQMQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLME 1076
            K+MQKVF ALDTLG TKWRVNK+VL+VVES+W +GGNIAGLV R D  +PEKP SED  E
Sbjct: 450  KKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSSEDSTE 509

Query: 1077 IQKWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHL 1256
             Q+WK S RKA K N ERH+QRCD ELKLSVARKM++E+GFYYPHNLDFRGRAYPMH HL
Sbjct: 510  SQEWKWSVRKANKINRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHL 569

Query: 1257 NHLSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIF 1436
            NHLSSDLCRGVLEFAEGRPL ++GLHWLKIHLANL+AGGV KLS+D RL FV+NHLDDIF
Sbjct: 570  NHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIF 629

Query: 1437 DSAERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYA 1616
            DSAE PI G RWWL AEDPFQCLAAC+NLSE+LKSSSPH+V S+LPIHQDGSCNGLQHYA
Sbjct: 630  DSAENPINGNRWWLTAEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYA 689

Query: 1617 ALGRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVD 1796
            ALGRDSLEAAAVNLVAG++PADVYSEIA RV N++KRD  KDPA+ P+A LAK+LIDQVD
Sbjct: 690  ALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSDKDPATNPNASLAKLLIDQVD 749

Query: 1797 RKLVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQ 1976
            RKLVKQTVMTSVYGVT++GAREQIKRRLEE+G I+DD++LF A+CY A VT+ ALGE+FQ
Sbjct: 750  RKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRVLFAAACYTAKVTLAALGELFQ 809

Query: 1977 AARSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGDC 2156
            AAR+IMGWLGDCAKVIASENQPV+W TPLGLPVVQPY KSERHLIRTSLQVLALQREGD 
Sbjct: 810  AARNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGDS 869

Query: 2157 VDSKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILRE 2336
            V+ ++QRTAFPPNFVHSLDGSHMMMTA ACRDAGLHFAGVHDSFWTHACD++KMNQILRE
Sbjct: 870  VEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVEKMNQILRE 929

Query: 2337 RFVELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            +FVELY  P+LENL ES QTS+P+L FP LP RG+FDL +VL+SPYFFN
Sbjct: 930  KFVELYSMPVLENLFESVQTSYPSLVFPPLPERGNFDLREVLKSPYFFN 978


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score = 1250 bits (3234), Expect = 0.0
 Identities = 612/827 (74%), Positives = 694/827 (83%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQESKRQKASY 182
            EAWE+ A+EYR LVREMCE+KL PNLPYVK L LGWFEPL EAI KEQ +++SK+QK+++
Sbjct: 58   EAWERMADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAF 117

Query: 183  APYIGLLPAEKMAVIVMHKMMGLLMVGPDEGSVRVVQAAVYVGDAIEQEVRIHNFLERSK 362
            +P I LLPA+KMAVIVMHKMMGLLMVG ++G VRVVQAAV +G AIEQEVRIHNFLE++K
Sbjct: 118  SPNIELLPADKMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTK 177

Query: 363  NSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQAKL 542
            N + RKK   E Q+   KE E+ R+ V  LI              DE TK W R  QAKL
Sbjct: 178  NYQ-RKKTMHEVQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVKQDE-TKPWSRGTQAKL 235

Query: 543  GSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDPLV 722
            GS LI+LL E A+VQPPVNQ  D  P++ PAFRH  KT+ K PG+K  K+ G IECDPL+
Sbjct: 236  GSRLIELLTETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLI 295

Query: 723  RKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPKKQ 902
              GL  TA+HM+IPY PMLVPP+ WKGY KGGHLFLPSYVMRTHG+RQQ  A+RSVP KQ
Sbjct: 296  LTGLDGTAKHMLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQ 355

Query: 903  MQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLMEIQ 1082
            MQKVF ALDTLG TKWRVN+R+L VVE +W +GGNIAGLV RED  +PEKP S+DL EIQ
Sbjct: 356  MQKVFEALDTLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQ 415

Query: 1083 KWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNH 1262
            KWK S RKAKK N ERH+QRCD ELKLSVARK+KDE+GFYYPHNLDFRGRAYPMH HL H
Sbjct: 416  KWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTH 475

Query: 1263 LSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIFDS 1442
            LSSDLCRGVLEF EGRPL K+GL WLKIHLANLY+GGV KLS+D RL FVENHL +IFDS
Sbjct: 476  LSSDLCRGVLEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDS 535

Query: 1443 AERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAAL 1622
            A+ P+ GKRWWLKAEDPFQCLAAC+NLSEAL S+SPH V SHLPIHQDGSCNGLQHYAAL
Sbjct: 536  AKNPVNGKRWWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAAL 595

Query: 1623 GRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVDRK 1802
            GRD+LEAAAVNLVA ++P+DVYSEIA RV  +++RD  KDPA+ P A LAKIL+DQVDRK
Sbjct: 596  GRDTLEAAAVNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRK 655

Query: 1803 LVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAA 1982
            LVKQTVMTSVYGVTY+GAREQIKRRLEE+G I+DD+LLF A+CY A VT+TALGE+FQAA
Sbjct: 656  LVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAA 715

Query: 1983 RSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGDCVD 2162
            R IM WLGDCAK+IASE+QPV+W TPLGLPVVQPY K+ERHLI+TSLQ+LALQREG  V 
Sbjct: 716  RDIMSWLGDCAKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQ 775

Query: 2163 SKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILRERF 2342
             ++QRTAFPPNFVHSLDGSHMMMTA ACRDAGL FAGVHDSFWTHA D+D MN+ILRE+F
Sbjct: 776  VRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKF 835

Query: 2343 VELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            VELY+ PILENLLE FQTS+PTL+FP LP RG+FDL KVL SPYFFN
Sbjct: 836  VELYNMPILENLLEDFQTSYPTLQFPPLPERGNFDLQKVLRSPYFFN 882


>ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
            gi|508784241|gb|EOY31497.1| DNA/RNA polymerases
            superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score = 1249 bits (3232), Expect = 0.0
 Identities = 616/830 (74%), Positives = 707/830 (85%), Gaps = 3/830 (0%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQE--SKRQKA 176
            EAWEK  EEYREL REMCEKKL PNLPYVK LFLGWFEP+ EAIA+EQ +Q+  SK+ +A
Sbjct: 31   EAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRA 90

Query: 177  SYAPYIGLLPAEKMAVIVMHKMMGLLMVGPDEGSVRVVQAAVYVGDAIEQEVRIHNFLER 356
            +YAP+I LLPA+KMAVIVMHKMMGL+M   + G V+VVQAAV++G AIEQEVRIHNFLE+
Sbjct: 91   AYAPHIELLPADKMAVIVMHKMMGLVMGAQENGFVQVVQAAVHIGVAIEQEVRIHNFLEK 150

Query: 357  SKNSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQA 536
            +KN + RKK  DE Q  + KE EI ++ V  LI             N+E  K WGRDAQA
Sbjct: 151  TKNYQ-RKKTTDEVQGLS-KEKEILKKRVNSLIRRRRLVEVQKLVKNEE-IKPWGRDAQA 207

Query: 537  KLGSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDP 716
            KLGS L++LL E A+VQPP++Q  D  P++ PAFRH  KTI K+PG+K  KR G IECDP
Sbjct: 208  KLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGKKMMKRYGVIECDP 267

Query: 717  LVRKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPK 896
            L+  GL  +A+HM+IPY+PMLVPP+ WKGY KGG+LFLPSYVMRTHG+R+Q DA++ V  
Sbjct: 268  LILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDALKGVHV 327

Query: 897  KQMQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLME 1076
            K+MQKVF ALDTLG TKWRVNK+VL+VVES+W +GGNIAGLV R D  +PEKP SED  E
Sbjct: 328  KKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSSEDSTE 387

Query: 1077 IQKWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHL 1256
             Q+WK S RKA K N ERH+QRCD ELKLSVARKM++E+GFYYPHNLDFRGRAYPMH HL
Sbjct: 388  SQEWKWSVRKANKINRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHL 447

Query: 1257 NHLSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIF 1436
            NHLSSDLCRGVLEFAEGRPL ++GLHWLKIHLANL+AGGV KLS+D RL FV+NHLDDIF
Sbjct: 448  NHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIF 507

Query: 1437 DSAERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYA 1616
            DSAE PI G RWWL AEDPFQCLAAC+NLSE+LKSSSPH+V S+LPIHQDGSCNGLQHYA
Sbjct: 508  DSAENPINGNRWWLTAEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYA 567

Query: 1617 ALGRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVD 1796
            ALGRDSLEAAAVNLVAG++PADVYSEIA RV N++KRD  KDPA+ P+A LAK+LIDQVD
Sbjct: 568  ALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSDKDPATNPNASLAKLLIDQVD 627

Query: 1797 RKLVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQ 1976
            RKLVKQTVMTSVYGVT++GAREQIKRRLEE+G I+DD++LF A+CY A VT+ ALGE+FQ
Sbjct: 628  RKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRVLFAAACYTAKVTLAALGELFQ 687

Query: 1977 AARSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGD- 2153
            AAR+IMGWLGDCAKVIASENQPV+W TPLGLPVVQPY KSERHLIRTSLQVLALQREGD 
Sbjct: 688  AARNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGDS 747

Query: 2154 CVDSKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILR 2333
             V+ ++QRTAFPPNFVHSLDGSHMMMTA ACRDAGLHFAGVHDSFWTHACD++KMNQILR
Sbjct: 748  VVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVEKMNQILR 807

Query: 2334 ERFVELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            E+FVELY  P+LENL ES QTS+P+L FP LP RG+FDL +VL+SPYFFN
Sbjct: 808  EKFVELYSMPVLENLFESVQTSYPSLVFPPLPERGNFDLREVLKSPYFFN 857


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556792|gb|ESR66806.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score = 1244 bits (3219), Expect = 0.0
 Identities = 604/827 (73%), Positives = 707/827 (85%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQESKRQKASY 182
            EAWE+  +EY+EL  +M EK+L PNLP++K LFLGWF PL+EAI +EQ +Q +K+QKA+Y
Sbjct: 188  EAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAY 247

Query: 183  APYIGLLPAEKMAVIVMHKMMGLLMVGPDEGSVRVVQAAVYVGDAIEQEVRIHNFLERSK 362
            AP+I LLPA+KMAVIVMHKMMGL+M G ++  V+VVQAAV++G AIEQE+RIH+FLE++K
Sbjct: 248  APHIELLPADKMAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK 307

Query: 363  NSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQAKL 542
            N + RKKI  + ++   KE E+ R+ V  LI             N+E TK WGRD QAKL
Sbjct: 308  NYK-RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE-TKPWGRDTQAKL 365

Query: 543  GSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDPLV 722
            GS L++LLIE A+VQ PVN      P++ PAFRH  KTI+K PG+K  KR G +ECDPLV
Sbjct: 366  GSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLV 425

Query: 723  RKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPKKQ 902
             +GL  +A+HM+IPY+PMLVPP+ WKGY KGG+LFLPSYVMRTHG+R+Q +A++SV    
Sbjct: 426  LEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC 485

Query: 903  MQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLMEIQ 1082
            M+KVF ALDTLG TKWRVNK+VLSV+ES+WV+GGNIAGLV R D  +PEKPLSED+ E+Q
Sbjct: 486  MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ 545

Query: 1083 KWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNH 1262
            KWK S RKAKK N ERH+QRCD ELKLSVAR+MKDE+GFYYPHNLDFRGRAYPMH HLNH
Sbjct: 546  KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605

Query: 1263 LSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIFDS 1442
            LSSD+CRGVLEFAEGRPL K+GL WLKIHLANL++GGV KLS+D RL FVENHL +IFDS
Sbjct: 606  LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665

Query: 1443 AERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAAL 1622
            AE PI G RWWL AEDPFQCLAAC+NL+EALKSSSPH+V SHLPIHQDGSCNGLQHYAAL
Sbjct: 666  AENPINGSRWWLTAEDPFQCLAACINLAEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 725

Query: 1623 GRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVDRK 1802
            GR++LEAAAVNLVAG++PADVYSEIA RV  ++KRD  KD +  P A LAKILIDQVDRK
Sbjct: 726  GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDHSKHPQALLAKILIDQVDRK 785

Query: 1803 LVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAA 1982
            LVKQTVMTSVYGVT++GAREQIKRRLEE+G I+DD+ LF A+CYAA VT+TALGE+F+AA
Sbjct: 786  LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAA 845

Query: 1983 RSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGDCVD 2162
            RSIMGWLGDCAKVIASENQPVRW TPLGLPVVQPY K+ERHLIRTSLQVLALQREG+ V+
Sbjct: 846  RSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVE 905

Query: 2163 SKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILRERF 2342
             ++QRTAFPPNFVHSLDGSHMMMTA ACRDAGLHFAGVHDSFWTHACD+D+MNQILR++F
Sbjct: 906  IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKF 965

Query: 2343 VELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            VELY+ P+LENLLESFQTS+PTL FP+LP RG+FDL +VLESPYFFN
Sbjct: 966  VELYNMPMLENLLESFQTSYPTLSFPSLPERGNFDLEEVLESPYFFN 1012


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score = 1244 bits (3218), Expect = 0.0
 Identities = 606/827 (73%), Positives = 704/827 (85%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQESKRQKASY 182
            EAWE+  +EY+EL  +M EK+L PNLP++K LFLGWF PL EAI +EQ +Q +K+QKA+Y
Sbjct: 185  EAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLREAIEREQKMQRTKKQKAAY 244

Query: 183  APYIGLLPAEKMAVIVMHKMMGLLMVGPDEGSVRVVQAAVYVGDAIEQEVRIHNFLERSK 362
            AP+I LLPA+K+AVIVMHKMMGL+M G ++  V+VVQAAV++G AIEQE+RIH+FLE++K
Sbjct: 245  APHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK 304

Query: 363  NSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQAKL 542
            N + RKKI  + ++   KE E+ R+ V  LI             N+E TK WGRD QAKL
Sbjct: 305  NYK-RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE-TKPWGRDTQAKL 362

Query: 543  GSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDPLV 722
            GS L++LLIE A+VQ PVN      P++ PAFRH  KTI+K PG+K  KR G +ECDPLV
Sbjct: 363  GSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLV 422

Query: 723  RKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPKKQ 902
              GL  +A+HM+IPY+PMLVPP+ WKGY KGG+LFLPSYVMRTHG+R+Q +A++SV    
Sbjct: 423  LAGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC 482

Query: 903  MQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLMEIQ 1082
            M+KVF ALDTLG TKWRVNK+VLSV+ES+WV+GGNIAGLV R D  +PEKPLSED+ E+Q
Sbjct: 483  MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVPIPEKPLSEDMTEVQ 542

Query: 1083 KWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNH 1262
            KWK S RKAKK N ERH+QRCD ELKLSVAR+MKDE+GFYYPHNLDFRGRAYPMH HLNH
Sbjct: 543  KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 602

Query: 1263 LSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIFDS 1442
            LSSD+CRGVLEFAEGRPL K+GL WLKIHLANL++GGV KLS+D RL FVENHL +IFDS
Sbjct: 603  LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 662

Query: 1443 AERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAAL 1622
            AE PI G RWWL AEDPFQCLAAC+NLSEALKSSSPH+V SHLPIHQDGSCNGLQHYAAL
Sbjct: 663  AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 722

Query: 1623 GRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVDRK 1802
            GR++LEAAAVNLVAG++PADVYSEIA RV  ++KRD  KDP+  P A LAKILIDQVDRK
Sbjct: 723  GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 782

Query: 1803 LVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAA 1982
            LVKQTVMTSVYGVT++GAREQIKRRLEE+G I+DD+ LF A+CYAA VT+TALGE+F+AA
Sbjct: 783  LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAA 842

Query: 1983 RSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGDCVD 2162
            RSIMGWLGDCAKVIASENQPVRW TPLGLPVVQPY K+ERHLIRTSLQVLALQREG  V+
Sbjct: 843  RSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGKSVE 902

Query: 2163 SKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILRERF 2342
             ++QRTAFPPNFVHSLDGSHMMMTA ACRDAGLHFAGVHDSFWTHACD+D+MNQILR++F
Sbjct: 903  IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKF 962

Query: 2343 VELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            VELY+ PILENLLESFQTS+PTL FP LP RG+FDL +VLESPYFFN
Sbjct: 963  VELYNMPILENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 1009


>ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
            gi|462398756|gb|EMJ04424.1| hypothetical protein
            PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score = 1241 bits (3210), Expect = 0.0
 Identities = 606/827 (73%), Positives = 694/827 (83%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQESKRQKASY 182
            EAWE+  +EY++L + M EKKL PNLPYVK+LFLGWFEPL EAIA+EQ  Q++K+ KA++
Sbjct: 152  EAWERMVDEYKDLEKVMREKKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAF 211

Query: 183  APYIGLLPAEKMAVIVMHKMMGLLMVGPDEGSVRVVQAAVYVGDAIEQEVRIHNFLERSK 362
            AP+I LLPA+KMA+IVMHKMMGL+MVG  +G V+VVQAAV++G AIEQEVRIH+FLE++K
Sbjct: 212  APHIDLLPADKMALIVMHKMMGLVMVGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTK 271

Query: 363  NSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQAKL 542
            N + +KK    ++    KE EI R+ V  LI              +E  K WGRD QAKL
Sbjct: 272  NLQ-KKKTGVADEDGLSKEKEILRKRVNGLIRRKRLNEVQKLLIKEE-MKPWGRDKQAKL 329

Query: 543  GSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDPLV 722
            GS LI+LL E A+VQPP++QL+D  P++ PAFRH  K + K PG+K  K  G IECDPLV
Sbjct: 330  GSRLIELLTETAYVQPPLSQLADSPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLV 389

Query: 723  RKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPKKQ 902
              GL  TA+HM+IPY+PMLVPP+ WKGY KGGHLFLPSYVMRTHG+R+Q+DA+R++ + Q
Sbjct: 390  LTGLDKTAKHMLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQ 449

Query: 903  MQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLMEIQ 1082
            MQKVF ALD LG TKWRVNK+VLSVVES+W  GGNIAGLV RED  VP+K  SEDL EIQ
Sbjct: 450  MQKVFEALDMLGSTKWRVNKKVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQ 509

Query: 1083 KWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNH 1262
            +WK S RKAKK N ERH+QRCD ELKLSVARKMKDE+GFYYPHNLDFRGRAYPMH HLNH
Sbjct: 510  EWKWSVRKAKKINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNH 569

Query: 1263 LSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIFDS 1442
            LSSDLCRGVLEFAEGRPL K+GL WLKIHLANLYAGGV KLSY+ RL FV+NH+DDIFDS
Sbjct: 570  LSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDS 629

Query: 1443 AERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAAL 1622
            A  P+ G RWWL AEDP QCLAAC+NLSEAL S SPH V SHLPIHQDGSCNGLQHYAAL
Sbjct: 630  ATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAAL 689

Query: 1623 GRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVDRK 1802
            GRDSLEAAAVNLV GD+PADVYSEIAARV  ++KRD  KDP + P+A LA+IL++Q+DRK
Sbjct: 690  GRDSLEAAAVNLVDGDKPADVYSEIAARVHEIMKRDSNKDPTTSPNALLARILVNQIDRK 749

Query: 1803 LVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAA 1982
            LVKQTVMTSVYGVTY+GAREQIKRRLEE+G+I+DD+LLF A+CYAA VT+ ALGE+FQAA
Sbjct: 750  LVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAA 809

Query: 1983 RSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGDCVD 2162
            R IM WLGDCAKVIASENQPVRW TPLGLPVVQPY KSERHLIRTSLQVLALQRE + VD
Sbjct: 810  RGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNSVD 869

Query: 2163 SKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILRERF 2342
             ++QRTAFPPNFVHSLDGSHMMMTA ACRDAGL FAGVHDSFWTH CD+D+MN+ILRE+F
Sbjct: 870  IRKQRTAFPPNFVHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVDQMNEILREKF 929

Query: 2343 VELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            VELY  PILE+LLESFQ S+P L FP LP RGDFDL +VLESPYFFN
Sbjct: 930  VELYSMPILESLLESFQASYPALTFPPLPERGDFDLLQVLESPYFFN 976


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score = 1239 bits (3205), Expect = 0.0
 Identities = 609/827 (73%), Positives = 694/827 (83%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQESKRQKASY 182
            EAWE+ AEEY  LV+EMCE+KL PNLPYVKSLFLGWFEPL EAI +EQ L++SK+QK+++
Sbjct: 158  EAWERMAEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAF 217

Query: 183  APYIGLLPAEKMAVIVMHKMMGLLMVGPDEGSVRVVQAAVYVGDAIEQEVRIHNFLERSK 362
            +P I LLPA+KMAVIVMHKMMGL+MVG ++G VRVVQAAV +G AIEQEVRIHNFLE++K
Sbjct: 218  SPNIELLPADKMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAIEQEVRIHNFLEKTK 277

Query: 363  NSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQAKL 542
            N + RKK   + Q++  KE E+ R+ V  LI              DE TK W RD QAKL
Sbjct: 278  NHQ-RKKTMHDVQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVIQDE-TKPWNRDKQAKL 335

Query: 543  GSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDPLV 722
            GS LI+LL E A+VQPPV+Q     P++ PAFRH  K++ K PG+K  K+ G IECDPL+
Sbjct: 336  GSRLIELLTETAYVQPPVDQSEGIPPDVRPAFRHIFKSVTKNPGQKTVKKYGVIECDPLI 395

Query: 723  RKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPKKQ 902
              GL  TA+HM+IPY PMLVPP+ W+GY KGGHLFLPSY+MRTHG+RQQ DA+RSVP KQ
Sbjct: 396  LTGLDGTAKHMLIPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQ 455

Query: 903  MQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLMEIQ 1082
            MQKVF ALDTLG TKWRVN +VL VVE +W +GGN AGLV R D  +PEK  S+DL EIQ
Sbjct: 456  MQKVFEALDTLGNTKWRVNGKVLDVVERIWASGGNNAGLVNRGDIPIPEKLSSDDLTEIQ 515

Query: 1083 KWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNH 1262
            KWK S RKAKK N ERH+QRCD ELKLSVARK+KDE+GFYYPHNLDFRGRAYPMH HL H
Sbjct: 516  KWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTH 575

Query: 1263 LSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIFDS 1442
            LSSDLCRGVLEFAEGRPL K+GL WLKIHLANLY+GGV KLS+D RL FVENHL +IFDS
Sbjct: 576  LSSDLCRGVLEFAEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDS 635

Query: 1443 AERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAAL 1622
            AE P+ GKRWWL AEDPFQCLAAC+NLSEALKS+SPH V SHLPIHQDGSCNGLQHYAAL
Sbjct: 636  AENPVNGKRWWLTAEDPFQCLAACINLSEALKSASPHTVISHLPIHQDGSCNGLQHYAAL 695

Query: 1623 GRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVDRK 1802
            GRDS EAAAVNLVA ++P+DVYSEIA RV  +++RD  KDPA+ P A LAK+LID+VDRK
Sbjct: 696  GRDSQEAAAVNLVAAEKPSDVYSEIATRVHEIIRRDSNKDPATNPHALLAKVLIDEVDRK 755

Query: 1803 LVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAA 1982
            LVKQTVMTSVYGVTY+GAREQIKRRLEE+G I+DD++LF A+CYAA VT+TALGE+FQAA
Sbjct: 756  LVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRVLFSAACYAAKVTLTALGELFQAA 815

Query: 1983 RSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGDCVD 2162
            R IMGWLGDCAKVIASE+QPVRW TPLGLPVVQPY K++RHLIRTSLQVLALQREG  V 
Sbjct: 816  RDIMGWLGDCAKVIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSLQVLALQREGSSVQ 875

Query: 2163 SKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILRERF 2342
             ++QRTAFPPNFVHSLDGSHMMMTA ACRDA L FAGVHDSFWTHA D D MN+ILRE+F
Sbjct: 876  VRKQRTAFPPNFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHARDADLMNRILREKF 935

Query: 2343 VELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            VELY+ PILENLLE FQTS+PTLKFP+LP RG+FDL +VL SPYFFN
Sbjct: 936  VELYNMPILENLLEDFQTSYPTLKFPSLPERGNFDLQEVLRSPYFFN 982


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 973

 Score = 1234 bits (3194), Expect = 0.0
 Identities = 601/827 (72%), Positives = 694/827 (83%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQESKRQKASY 182
            EAWEK  E+Y++L R M EKKL P+LPYVK+LFLGWFEPL EAIAKEQ  Q++K+ K ++
Sbjct: 149  EAWEKMVEDYKDLERVMREKKLAPSLPYVKALFLGWFEPLREAIAKEQKAQQTKKHKQAF 208

Query: 183  APYIGLLPAEKMAVIVMHKMMGLLMVGPDEGSVRVVQAAVYVGDAIEQEVRIHNFLERSK 362
            AP+I LLPA+KMA+IVMHK+MGL+M+G  +G V+VVQAAV++G AIEQEVRIH+FLE+SK
Sbjct: 209  APHIDLLPADKMALIVMHKLMGLVMMGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKSK 268

Query: 363  NSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQAKL 542
            + + RKK    ++    KE EI R+ V  LI               ED K WGRD QAKL
Sbjct: 269  SLQ-RKKTSVADEDGLSKEKEILRKRVNGLIRRKRLVEVQKLLKK-EDMKPWGRDTQAKL 326

Query: 543  GSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDPLV 722
            GS LI+LL E A VQPP++QL+D  P++ PAFRH +K   K PG+K  K  G IECDPLV
Sbjct: 327  GSRLIELLTETAHVQPPLDQLADGPPDVRPAFRHRLKAAAKSPGQKLVKNYGVIECDPLV 386

Query: 723  RKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPKKQ 902
              GL  TA+HM+IPY+PMLVPP+ WKGY KGGHLFLPSYVMRTHG+R+Q+D +R++  +Q
Sbjct: 387  LAGLDKTAKHMLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDTMRNISGRQ 446

Query: 903  MQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLMEIQ 1082
            MQKVF ALD LG TKWR+NK+VL+VVES+W  GGNIAGLV RED  VPEKP SED  EIQ
Sbjct: 447  MQKVFEALDMLGSTKWRINKKVLNVVESIWARGGNIAGLVDREDVPVPEKPPSEDPTEIQ 506

Query: 1083 KWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNH 1262
            +W+ S+RKAKK N ERH+QRCD ELKLSVAR+MKDEDGFYYPHNLDFRGRAYPMH HLNH
Sbjct: 507  EWRWSARKAKKLNQERHSQRCDTELKLSVARRMKDEDGFYYPHNLDFRGRAYPMHPHLNH 566

Query: 1263 LSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIFDS 1442
            LSSDLCRGVLEFAEGRPL K+GL WLKIHLANLY+GGV KLSYD R++FV+NH+DDIFDS
Sbjct: 567  LSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYSGGVEKLSYDGRISFVDNHIDDIFDS 626

Query: 1443 AERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAAL 1622
            A  P+ G RWWL AEDP QCLAAC+NLSEAL S SPH V SHLPIHQDGSCNGLQHYAAL
Sbjct: 627  ATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAAL 686

Query: 1623 GRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVDRK 1802
            GRD+LEAAAVNLVAG++PADVYSEIA RV +++KRD  KDP + P+A LAK+L++Q+DRK
Sbjct: 687  GRDTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPTTNPNALLAKVLVNQIDRK 746

Query: 1803 LVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAA 1982
            LVKQTVMTSVYGVTY+GAREQIKRRLEE+G+I+DD+LLF A+CYAA VT+ ALGE+FQAA
Sbjct: 747  LVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAA 806

Query: 1983 RSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGDCVD 2162
            R IM WLGDCAKVIASENQPVRW TPLGLPVVQPY KSERHLIRTSLQVLALQRE + VD
Sbjct: 807  RGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNLVD 866

Query: 2163 SKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILRERF 2342
             ++QRTAFPPNFVHSLDGSHMMMTA ACRDAG+ FAGVHDSFWTHACD+D+MNQILRE F
Sbjct: 867  VRKQRTAFPPNFVHSLDGSHMMMTALACRDAGIRFAGVHDSFWTHACDVDQMNQILRENF 926

Query: 2343 VELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            VELY  PILENLLESFQ ++P L FP LP RGDFDL +VL+SPYFFN
Sbjct: 927  VELYSKPILENLLESFQAAYPELTFPPLPERGDFDLQEVLKSPYFFN 973


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score = 1231 bits (3185), Expect = 0.0
 Identities = 602/811 (74%), Positives = 687/811 (84%)
 Frame = +3

Query: 51   MCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQESKRQKASYAPYIGLLPAEKMAVIV 230
            MCEKKL PNLPYVK+LFLGWFEPL EAI KEQ  Q +K+QKA+YAP+I LLPA+KMAVIV
Sbjct: 1    MCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIV 60

Query: 231  MHKMMGLLMVGPDEGSVRVVQAAVYVGDAIEQEVRIHNFLERSKNSRGRKKIDDEEQKAT 410
            MHKMMGL+M+G +EG VRVVQAAV +G AIEQEVRIH+FLE++KN    K +   ++   
Sbjct: 61   MHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEGL- 119

Query: 411  CKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQAKLGSCLIKLLIEAAFVQP 590
             +E EI R+ V+  I             N+E T  WGRD QAKLGS LI+LL E A+VQ 
Sbjct: 120  -REKEILRKRVKSFIRKKKIIEVQKLVKNEEITP-WGRDTQAKLGSRLIELLTETAYVQT 177

Query: 591  PVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDPLVRKGLHSTARHMVIPYM 770
            PVNQ +DC P++ PAFRHT KT+ KE G+K  ++ G IECDPLV  GL  TA+HMVIPY+
Sbjct: 178  PVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYV 237

Query: 771  PMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPKKQMQKVFGALDTLGKTKW 950
            PML+PP+ WKGY KGG+LFLPSYVMRTHG+R+Q DA++SVP++Q+QKVF ALDTLG TKW
Sbjct: 238  PMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKW 297

Query: 951  RVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLMEIQKWKQSSRKAKKCNHER 1130
            R+N+RVLSVVES+W  GGN+ GLV RE+  +PEKP +EDL EIQ WK ++RKAKK N ER
Sbjct: 298  RINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQER 357

Query: 1131 HAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGR 1310
            H+ RCD E+KLSVARKMKDE+GFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFAEGR
Sbjct: 358  HSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGR 417

Query: 1311 PLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIFDSAERPIEGKRWWLKAED 1490
            PL K+GL WLKI LANLYAGGV KLSYD RL FV+NHLDD+FDSA+ P+ G RWWL AED
Sbjct: 418  PLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAED 477

Query: 1491 PFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGD 1670
            PFQCLAAC+NLSEAL+SSSPH V SHLPIHQDGSCNGLQHYAALGR+SLEA+AVNLVAG+
Sbjct: 478  PFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGE 537

Query: 1671 RPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVDRKLVKQTVMTSVYGVTYI 1850
            +PADVYSEIAARV  ++KRD  KDPA+ P A LAK+LI QVDRKLVKQTVMTSVYGVTYI
Sbjct: 538  KPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYI 597

Query: 1851 GAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAARSIMGWLGDCAKVIAS 2030
            GAREQIKRRL E+G+I+D++LLF A+CYAA VT+ ALGE+FQAAR IM WLG+CAKVIAS
Sbjct: 598  GAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIAS 657

Query: 2031 ENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGDCVDSKRQRTAFPPNFVHSL 2210
            ENQPV+W TPLGLPV+QPY KSERHLIRTSLQVLALQREG  V  ++QRTAFPPNFVHSL
Sbjct: 658  ENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSL 717

Query: 2211 DGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILRERFVELYDAPILENLLESF 2390
            DGSHMMMTA ACRDAGL FAGVHDSFWTHACD+DKMNQILRE+FVELY  PILENLLESF
Sbjct: 718  DGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENLLESF 777

Query: 2391 QTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            QTS PTL FP LP RG+FDL +VLESPYFFN
Sbjct: 778  QTSHPTLTFPPLPDRGNFDLREVLESPYFFN 808


>gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Mimulus guttatus]
          Length = 941

 Score = 1222 bits (3162), Expect = 0.0
 Identities = 595/828 (71%), Positives = 688/828 (83%), Gaps = 1/828 (0%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQESKRQKASY 182
            EAWE + EEYREL REMCEKKL PNLPYVK L LGWFEPL EAI KEQ+ Q SK+ KA++
Sbjct: 116  EAWENKVEEYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNTQRSKKNKAAF 175

Query: 183  APYIGLLPAEKMAVIVMHKMMGLLMVGPDEGS-VRVVQAAVYVGDAIEQEVRIHNFLERS 359
            AP+I  LPA+KMAVIVMHKMMGLLM+G  E   VRVV+AAV +G A+E EVRIH+FLE+ 
Sbjct: 176  APFIDALPADKMAVIVMHKMMGLLMMGGKEDRCVRVVEAAVQIGVAVENEVRIHSFLEKM 235

Query: 360  KNSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQAK 539
            K +  +++I DE Q  +  E  I R+ V+ LI             ++E  KSWGRD QAK
Sbjct: 236  KKNE-KREIGDESQVDSSNEAVIMRKRVKSLIKRNRVIEVHKLVRSEE-FKSWGRDIQAK 293

Query: 540  LGSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDPL 719
            LG CLI+LL ++A+VQPPVNQ +D  P++ PAFRH  K   + PG+   KR G IECDPL
Sbjct: 294  LGCCLIELLTQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRLPGQTIVKRYGVIECDPL 353

Query: 720  VRKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPKK 899
            V  GL  T +HM+IPY+PMLVPP+ WKGY +GG+LFLPSY+MRTHG+R Q DA+++V  K
Sbjct: 354  VLAGLDKTVKHMIIPYVPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSRHQQDAVKTVTSK 413

Query: 900  QMQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLMEI 1079
            QMQKV+ ALDTLG TKWRVNKR+L+VVE++W  GGNIAGLV RED  +PE  LSED+ E 
Sbjct: 414  QMQKVYEALDTLGNTKWRVNKRILTVVENIWAAGGNIAGLVNREDIPIPELLLSEDMKEA 473

Query: 1080 QKWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLN 1259
            +KWK S RK KK N ERH+QRCD ELKLSVARKMKDE+GFYYPHNLDFRGRAYPMH HLN
Sbjct: 474  KKWKWSVRKVKKINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLN 533

Query: 1260 HLSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIFD 1439
            HLSSDLCRGVLEFAEGRPL K+GL WLKIH+ANLY GGV KLSYD R+ FVEN++ +IFD
Sbjct: 534  HLSSDLCRGVLEFAEGRPLGKSGLRWLKIHVANLYGGGVEKLSYDDRVAFVENNISEIFD 593

Query: 1440 SAERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAA 1619
            SA+  + G RWWLKAEDPFQCLAAC+NL EALKS SPH V SHLPIHQDGSCNGLQHYAA
Sbjct: 594  SADNSLNGNRWWLKAEDPFQCLAACINLVEALKSPSPHTVISHLPIHQDGSCNGLQHYAA 653

Query: 1620 LGRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVDR 1799
            LGRDS EAAAVNLVAGD+P+DVYSEIA RV N++KRD  KDP +   A +AK+LI QVDR
Sbjct: 654  LGRDSFEAAAVNLVAGDKPSDVYSEIAERVHNIMKRDSEKDPETDRHALIAKVLIGQVDR 713

Query: 1800 KLVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQA 1979
            KLVKQTVMTSVYGVTY+GAREQIKRRLEE+G+I+DD+LLF A+CYAA VT+ ALGE+FQA
Sbjct: 714  KLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDKLLFSAACYAAKVTLAALGELFQA 773

Query: 1980 ARSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGDCV 2159
            AR+IM WLGDCAK+IASEN+PVRW TPLGLPVVQPY KS+RH+IRTSLQVLALQREGD V
Sbjct: 774  ARAIMAWLGDCAKIIASENEPVRWTTPLGLPVVQPYFKSQRHVIRTSLQVLALQREGDSV 833

Query: 2160 DSKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILRER 2339
            + ++QRTAFPPNFVHSLDGSHMMMTA ACRDAGL FAGVHDSFWTHACD+D+MNQILR++
Sbjct: 834  EVRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQK 893

Query: 2340 FVELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            FV+LY  PILENLLESF+TS+PTLKFP LP RGDF L +V+ESPYFFN
Sbjct: 894  FVDLYSMPILENLLESFETSYPTLKFPPLPNRGDFLLEQVIESPYFFN 941


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1221 bits (3159), Expect = 0.0
 Identities = 598/827 (72%), Positives = 691/827 (83%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQESKRQKASY 182
            EAWEK  EEY+EL REMCEKKL PNLPYVK LFLGWFEPL  AI +EQ  Q SK+QKA++
Sbjct: 153  EAWEKMVEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAF 212

Query: 183  APYIGLLPAEKMAVIVMHKMMGLLMVGPDEGSVRVVQAAVYVGDAIEQEVRIHNFLERSK 362
            AP+I LL A+KMAVIVM+KMMGLLM+   +G V+VVQAAV +G AIEQEVRI + LE+++
Sbjct: 213  APHIELLSADKMAVIVMYKMMGLLMMAAQDGCVQVVQAAVQIGGAIEQEVRIQSILEKAR 272

Query: 363  NSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQAKL 542
            +++  K   D E     KE E+ R+ V  LI              +E  K+WGRD QAKL
Sbjct: 273  SNQRTKVRADTE--CLTKEKEVLRKQVNGLIRRRKLKEVQKLLKKEE-FKAWGRDTQAKL 329

Query: 543  GSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDPLV 722
            GS LI+LLIE+AF+QPPV+Q +D  P+I PAF H  K + K PG+   K+ G +ECDP+V
Sbjct: 330  GSRLIELLIESAFIQPPVSQSADSPPDIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIV 389

Query: 723  RKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPKKQ 902
              GL  TA+HM+IPY+PMLVPP+ WKGY KGGH FLPSYVMRTHG+ +Q DA++++  KQ
Sbjct: 390  LAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQ 449

Query: 903  MQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLMEIQ 1082
            MQKVF ALD LG TKWRVN+ VLSVVESLW  GGN AGLV R+D  +PEKPL  DL E+Q
Sbjct: 450  MQKVFEALDMLGSTKWRVNRSVLSVVESLWAQGGNTAGLVDRKDVPIPEKPLG-DLTEMQ 508

Query: 1083 KWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNH 1262
            +W+ S +KAKK N E H+QRCD+ELKLSVARKMKDE+GFYYPHNLDFRGRAYPMH HLNH
Sbjct: 509  EWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNH 568

Query: 1263 LSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIFDS 1442
            LSSDLCRGVLEFAEGRPL K+GLHWLKIHLANLYAGGV KLSYD RL FV++HLD+IFDS
Sbjct: 569  LSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDS 628

Query: 1443 AERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAAL 1622
            A  P+ G RWWL AEDPFQCLAACMNLSEALKSS+PH V S+LPIHQDGSCNGLQHYAAL
Sbjct: 629  ASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAAL 688

Query: 1623 GRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVDRK 1802
            GRD+LEAAAVNLVAG++PADVYSEIAARV  ++ RD  KDP + P+A LAK+LIDQVDRK
Sbjct: 689  GRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRK 748

Query: 1803 LVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAA 1982
            LVKQTVMTSVYGVTYIGAREQIKRRLEE+G+ISDD+L F+ASCYAA VT++ALGE+F+AA
Sbjct: 749  LVKQTVMTSVYGVTYIGAREQIKRRLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAA 808

Query: 1983 RSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGDCVD 2162
            R IMGWLGDCAKVIA +NQPVRW TPLGLPVVQPY KSERHLIRTSLQVLALQREG+ VD
Sbjct: 809  RGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVD 868

Query: 2163 SKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILRERF 2342
             ++QRTAFPPNFVHSLDGSHMM+TA ACRDAGL FAGVHDSFWTHACD+D+MN ILRE+F
Sbjct: 869  VRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKF 928

Query: 2343 VELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            VELY  P+LE+LLE F+T++P L FP+LPGRGDFDL +VL+SPYFFN
Sbjct: 929  VELYSMPVLESLLEGFETTYPGLTFPSLPGRGDFDLQEVLKSPYFFN 975


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1218 bits (3152), Expect = 0.0
 Identities = 597/827 (72%), Positives = 690/827 (83%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQESKRQKASY 182
            EAWEK  EEY+EL REMCEKKL PNLPYVK LFLGWFEPL  AI +EQ  Q SK+QKA++
Sbjct: 153  EAWEKMVEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAF 212

Query: 183  APYIGLLPAEKMAVIVMHKMMGLLMVGPDEGSVRVVQAAVYVGDAIEQEVRIHNFLERSK 362
            AP+I LL A+KMA IVM+KMMGLLM+   +G V+VVQAAV +G AIEQEVRI + LE+++
Sbjct: 213  APHIELLSADKMAGIVMYKMMGLLMMAAQDGCVQVVQAAVQIGGAIEQEVRIQSILEKAR 272

Query: 363  NSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQAKL 542
            +++  K   D E     KE E+ R+ V  LI              +E  K+WGRD QAKL
Sbjct: 273  SNQRTKVRADTE--CLTKEKEVLRKQVNGLIRRRKLKEVQKLLKKEE-FKAWGRDTQAKL 329

Query: 543  GSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDPLV 722
            GS LI+LLIE+AF+QPPV+Q +D  P+I PAF H  K + K PG+   K+ G +ECDP+V
Sbjct: 330  GSRLIELLIESAFIQPPVSQSADSPPDIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIV 389

Query: 723  RKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPKKQ 902
              GL  TA+HM+IPY+PMLVPP+ WKGY KGGH FLPSYVMRTHG+ +Q DA++++  KQ
Sbjct: 390  LAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQ 449

Query: 903  MQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLMEIQ 1082
            MQKVF ALD LG TKWRVN+ VLSVVESLW  GGN AGLV R+D  +PEKPL  DL E+Q
Sbjct: 450  MQKVFEALDMLGSTKWRVNRSVLSVVESLWAQGGNTAGLVDRKDVPIPEKPLG-DLTEMQ 508

Query: 1083 KWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNH 1262
            +W+ S +KAKK N E H+QRCD+ELKLSVARKMKDE+GFYYPHNLDFRGRAYPMH HLNH
Sbjct: 509  EWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNH 568

Query: 1263 LSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIFDS 1442
            LSSDLCRGVLEFAEGRPL K+GLHWLKIHLANLYAGGV KLSYD RL FV++HLD+IFDS
Sbjct: 569  LSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDS 628

Query: 1443 AERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAAL 1622
            A  P+ G RWWL AEDPFQCLAACMNLSEALKSS+PH V S+LPIHQDGSCNGLQHYAAL
Sbjct: 629  ASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAAL 688

Query: 1623 GRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVDRK 1802
            GRD+LEAAAVNLVAG++PADVYSEIAARV  ++ RD  KDP + P+A LAK+LIDQVDRK
Sbjct: 689  GRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRK 748

Query: 1803 LVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAA 1982
            LVKQTVMTSVYGVTYIGAREQIKRRLEE+G+ISDD+L F+ASCYAA VT++ALGE+F+AA
Sbjct: 749  LVKQTVMTSVYGVTYIGAREQIKRRLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAA 808

Query: 1983 RSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGDCVD 2162
            R IMGWLGDCAKVIA +NQPVRW TPLGLPVVQPY KSERHLIRTSLQVLALQREG+ VD
Sbjct: 809  RGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVD 868

Query: 2163 SKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILRERF 2342
             ++QRTAFPPNFVHSLDGSHMM+TA ACRDAGL FAGVHDSFWTHACD+D+MN ILRE+F
Sbjct: 869  VRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKF 928

Query: 2343 VELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            VELY  P+LE+LLE F+T++P L FP+LPGRGDFDL +VL+SPYFFN
Sbjct: 929  VELYSMPVLESLLEGFETTYPGLTFPSLPGRGDFDLQEVLKSPYFFN 975


>ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [Amborella trichopoda]
            gi|548861119|gb|ERN18503.1| hypothetical protein
            AMTR_s00065p00022170 [Amborella trichopoda]
          Length = 987

 Score = 1201 bits (3108), Expect = 0.0
 Identities = 588/827 (71%), Positives = 677/827 (81%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQESKRQKASY 182
            EAWE+   EYREL+ EMCE+KL PNLPY+KSLFLGWFEPL +AIA+EQ+LQE+KR K  Y
Sbjct: 162  EAWERAVREYRELISEMCEQKLAPNLPYMKSLFLGWFEPLRDAIAEEQALQETKRAKTGY 221

Query: 183  APYIGLLPAEKMAVIVMHKMMGLLMVGPDEGSVRVVQAAVYVGDAIEQEVRIHNFLERSK 362
            APYIGLL A+KMAVIVMHK+MGL+M G D GSVRVVQAA  +G+A+E E RIH+FLE++K
Sbjct: 222  APYIGLLTADKMAVIVMHKLMGLMMTGQDCGSVRVVQAACQIGEAVEHEARIHDFLEKTK 281

Query: 363  NSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQAKL 542
                R K   EE ++  KE E  R+ V  L+               +D K WG+DA AKL
Sbjct: 282  KKSRRGKKVGEESESLSKEQENLRKRVTNLMKMQKLREVRKLVRQGDDVKPWGQDAHAKL 341

Query: 543  GSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDPLV 722
            GS LI+L I+ A++QPPV+Q ++  PEI PAFRHT +T  K+  +K  +R G IECDPLV
Sbjct: 342  GSRLIELFIKTAYIQPPVDQQAEGPPEIRPAFRHTFRTFTKDR-QKFCRRYGVIECDPLV 400

Query: 723  RKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPKKQ 902
             KGL  TARHMV  Y PML+ P+ W+GY KGG+L LPS +MR HGA+QQ +A+++VP+KQ
Sbjct: 401  HKGLDKTARHMVTAYTPMLIRPKPWRGYDKGGYLVLPSQIMRIHGAKQQREAVKNVPQKQ 460

Query: 903  MQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLMEIQ 1082
            +Q VF ALDTLG TKWRVNKR+L VV  +W  GG IAGLV RED  +PEKP +ED MEI+
Sbjct: 461  LQNVFEALDTLGSTKWRVNKRILDVVNRVWARGGGIAGLVDREDVLLPEKPDTEDEMEIR 520

Query: 1083 KWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNH 1262
            KW+ S +KAKK N ERH+QRCD+ELKLSVARKM++E+GFYYPHNLDFRGRAYPMH HLNH
Sbjct: 521  KWRWSVKKAKKVNSERHSQRCDLELKLSVARKMREEEGFYYPHNLDFRGRAYPMHPHLNH 580

Query: 1263 LSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIFDS 1442
            L SDLCRG+LEFAEGRPL K+GL W KIHLANLYA GV KLSYD RL FVENHLDDIFDS
Sbjct: 581  LGSDLCRGILEFAEGRPLGKSGLRWSKIHLANLYACGVDKLSYDGRLAFVENHLDDIFDS 640

Query: 1443 AERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAAL 1622
            AERP+EGKRWWL AEDPFQCLAACMNL EALKS +P  V SH+P+HQDGSCNGLQHYAAL
Sbjct: 641  AERPLEGKRWWLNAEDPFQCLAACMNLFEALKSPTPENVISHMPVHQDGSCNGLQHYAAL 700

Query: 1623 GRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVDRK 1802
            GRD L AAAVNLVAG++PADVYS IAARVL ++KRD  K PAS P+AFLA+ L+DQVDRK
Sbjct: 701  GRDRLGAAAVNLVAGEKPADVYSGIAARVLEIMKRDSEKGPASNPNAFLARALVDQVDRK 760

Query: 1803 LVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAA 1982
            LVKQTVMTSVYGVTYIGAR+QI RRL+ERG I+DD  LF+ASCYAA VT+TALGE FQAA
Sbjct: 761  LVKQTVMTSVYGVTYIGARDQICRRLKERGHITDDSQLFRASCYAAKVTLTALGETFQAA 820

Query: 1983 RSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGDCVD 2162
            R+IM WLGDCAKVIASEN+PVRW TPLGLPVVQPY+K  RHL++TSLQVLALQRE + V 
Sbjct: 821  RNIMSWLGDCAKVIASENEPVRWTTPLGLPVVQPYRKFARHLVKTSLQVLALQRESNSVM 880

Query: 2163 SKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILRERF 2342
             KRQRTAF PNFVHSLDGSHMMMTA AC+  GL+FAGVHDS+WTHACD+D+MN ILRE+F
Sbjct: 881  VKRQRTAFAPNFVHSLDGSHMMMTAIACKKIGLNFAGVHDSYWTHACDVDEMNWILREKF 940

Query: 2343 VELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            VELY  PILENLLE FQTSFPTL FP +P RGDFDL  VLESPYFFN
Sbjct: 941  VELYSMPILENLLEGFQTSFPTLVFPAVPERGDFDLRDVLESPYFFN 987


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score = 1201 bits (3107), Expect = 0.0
 Identities = 585/828 (70%), Positives = 687/828 (82%), Gaps = 1/828 (0%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQESKRQKASY 182
            EAWE+  EEYREL REMCEKKL PNLPYVK L LGWFEPL +AI KEQ+ + + + +A++
Sbjct: 153  EAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAF 212

Query: 183  APYIGLLPAEKMAVIVMHKMMGLLMVG-PDEGSVRVVQAAVYVGDAIEQEVRIHNFLERS 359
            AP+I  LPA+KMAVIVMHK+MGLLM+G  +E  V+VVQAAV +G A+E EVRIHNFLE++
Sbjct: 213  APHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKT 272

Query: 360  KNSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQAK 539
            K  + +     + Q+   +E  I R+ V+ LI             ++E  +SWGRD QAK
Sbjct: 273  KKLQ-KHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKSEEP-ESWGRDTQAK 330

Query: 540  LGSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDPL 719
            LG  L++LL E A+VQPPV+Q +D  P+I PAFRH  +   ++PG+   K+ G IECDPL
Sbjct: 331  LGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPL 390

Query: 720  VRKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPKK 899
            V  G+  T + M+IPY+PMLVPP+ W+GY KGG+LFLPSY+MRTHG+R+Q DA+RSVP K
Sbjct: 391  VVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTK 450

Query: 900  QMQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLMEI 1079
            QMQ+V+ ALDTLG TKWRVNKR+LSVVES+W  GGNIAGLV R+D  +PE   S+D+ME+
Sbjct: 451  QMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH-SDDIMEV 509

Query: 1080 QKWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLN 1259
            +KWK   RK+KK N E H+QRCD ELKLSVARK+KDE+GFYYPHNLDFRGRAYPMH HLN
Sbjct: 510  KKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLN 569

Query: 1260 HLSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIFD 1439
            HLSSDLCRG+LEFAEGRPL K+GL WLKIHLA+LYAGG+ KL YD RL FVENH+DDI D
Sbjct: 570  HLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILD 629

Query: 1440 SAERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAA 1619
            SA  P+ G RWWL AEDPFQCLAAC+NLSEALKSSSPH V SHLPIHQDGSCNGLQHYAA
Sbjct: 630  SANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAA 689

Query: 1620 LGRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVDR 1799
            LGRDS+EAAAVNLVAGD+PADVY+EIA RV ++++ D +KDPA+ P+A LAK+LIDQVDR
Sbjct: 690  LGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDR 749

Query: 1800 KLVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQA 1979
            KLVKQTVMTSVYGVTY+GAREQIKRRLEE+G+I DD+LLF ASCYAA VT+ ALGE+FQA
Sbjct: 750  KLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQA 809

Query: 1980 ARSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGDCV 2159
            AR  M WLGDCAKVIASENQPVRW TPLGLPVVQPY K++RH+IRTSLQVLALQREGD V
Sbjct: 810  ARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTV 869

Query: 2160 DSKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILRER 2339
            + ++QRTAFPPNFVHSLDGSHMMMTA ACRDAGL FAGVHDSFWTHACD+D+MN+ILRE+
Sbjct: 870  EVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREK 929

Query: 2340 FVELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            FVELY  PILE+LLESFQ S+P L FP LP RGDFDL +VLESPYFFN
Sbjct: 930  FVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVLESPYFFN 977


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score = 1195 bits (3091), Expect = 0.0
 Identities = 580/828 (70%), Positives = 685/828 (82%), Gaps = 1/828 (0%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQESKRQKASY 182
            EAWE+  EEYREL REMCEKKL PNLPYVK L LGWFEPL +AI KEQ+ + +++ + +Y
Sbjct: 191  EAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAEMTQKHRTAY 250

Query: 183  APYIGLLPAEKMAVIVMHKMMGLLMVG-PDEGSVRVVQAAVYVGDAIEQEVRIHNFLERS 359
            AP+I  LPA+KMAVIVMHK+MGLLM+G  +E  V+VVQAAV +G A+E EVRIHNF+E++
Sbjct: 251  APHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFMEKT 310

Query: 360  KNSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQAK 539
            K  + +     + Q+   +E  I R+ V+ LI             ++E  +SWGRD QAK
Sbjct: 311  KKHQ-KHMSGAQGQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQSEEP-ESWGRDTQAK 368

Query: 540  LGSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDPL 719
            LG  L++LL E A+VQPPV+Q +D  P+I PAFRH  +   ++PG+   K+ G IECDPL
Sbjct: 369  LGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIECDPL 428

Query: 720  VRKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPKK 899
            V  G+  T + M+IPY+PMLVPP+ W+GY KGG+LFLPSY+MRTHG+R+Q DA+RSVP K
Sbjct: 429  VVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPAK 488

Query: 900  QMQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLMEI 1079
            QMQ+V+ ALDTLG TKWRVNKR+LSVVES+W  GGNIAGLV R+D  +PE   S+D+ME+
Sbjct: 489  QMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH-SDDIMEL 547

Query: 1080 QKWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLN 1259
            ++WK   RKAKK N E H+QRCD ELKLSVARK+KDE+GFYYPHNLDFRGRAYPMH HLN
Sbjct: 548  KRWKWRVRKAKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLN 607

Query: 1260 HLSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIFD 1439
            HLSSDLCRG+LEFAEGRPL K+GL WLK+HLA+LYAGG+ KL YD R+ FVENH+DDI D
Sbjct: 608  HLSSDLCRGILEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILD 667

Query: 1440 SAERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAA 1619
            SA  P+ G RWWL AEDP QCLAAC+NLSEALKS SPH V SHLPIHQDGSCNGLQHYAA
Sbjct: 668  SAHNPLNGNRWWLNAEDPLQCLAACINLSEALKSPSPHTVISHLPIHQDGSCNGLQHYAA 727

Query: 1620 LGRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVDR 1799
            LGRDS+EAAAVNLVAG++PADVY+EIA RV ++++ D  KDPA+ P+A LAK+LIDQVDR
Sbjct: 728  LGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLIDQVDR 787

Query: 1800 KLVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQA 1979
            KLVKQTVMTSVYGVTY+GAREQIKRRLEE+G+I DD+LLF ASCYAA VT+ ALGE+FQA
Sbjct: 788  KLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQA 847

Query: 1980 ARSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGDCV 2159
            AR  M WLGDCAKVIASENQPVRW TPLGLPVVQPY K++RH+IRTSLQVLALQREGD V
Sbjct: 848  ARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDAV 907

Query: 2160 DSKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILRER 2339
            + ++QRTAFPPNFVHSLDGSHMMMTA ACRDAGLHFAGVHDSFWTHACD+D+MN+ILRE+
Sbjct: 908  EVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILREK 967

Query: 2340 FVELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            FVELY  PILE+LLESFQ S+P L FP LP RGDFDL +VLESPYFFN
Sbjct: 968  FVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLQEVLESPYFFN 1015


>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score = 1193 bits (3086), Expect = 0.0
 Identities = 580/827 (70%), Positives = 683/827 (82%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQESKRQKASY 182
            EAWE   EEYRE VREM +KKL PNLP VK+LFLGWFEPL +AI KEQ  Q S++QKA Y
Sbjct: 167  EAWESMVEEYREFVREMRDKKLAPNLPQVKALFLGWFEPLKKAIEKEQKSQRSRKQKAIY 226

Query: 183  APYIGLLPAEKMAVIVMHKMMGLLMVGPDEGSVRVVQAAVYVGDAIEQEVRIHNFLERSK 362
              +I +LPA+KMAVIVMHKMM LLMVG D G VR+VQAA+ +G AIEQE++IH+FLE++K
Sbjct: 227  GYHIDMLPADKMAVIVMHKMMSLLMVGNDAGCVRLVQAALQIGTAIEQEIKIHSFLEKTK 286

Query: 363  NSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQAKL 542
            N R   K   +  +   KE EI+R  V+ LI             + ED+KSW +D QAKL
Sbjct: 287  NIR---KNASDLPEDLLKEKEIQRNRVKSLIKRKRLFEAAKLVTS-EDSKSWSQDTQAKL 342

Query: 543  GSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDPLV 722
            GS LI+LLI+ A++Q P +Q +D  P++ PAFRH  K +  E G++  KR G IECDPLV
Sbjct: 343  GSRLIELLIDTAYIQHPTSQSADTPPDVRPAFRHKFKILNNELGQQVVKRYGVIECDPLV 402

Query: 723  RKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPKKQ 902
             KG+  +AR+M+IPY+PML+PP+NWKGY KGG+LFLPSYVMRTHG+R+Q DA+R  P +Q
Sbjct: 403  LKGIDRSARYMIIPYVPMLIPPKNWKGYDKGGYLFLPSYVMRTHGSRKQQDAMRKTPPQQ 462

Query: 903  MQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLMEIQ 1082
            MQKVF AL+TLG TKWR+N++VL VVE+LW +GGNI GLV  +D  +PEKPL+ED  EI 
Sbjct: 463  MQKVFEALNTLGHTKWRINRKVLGVVENLWASGGNIGGLVNCDDVPLPEKPLTEDPAEID 522

Query: 1083 KWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNH 1262
             WK S RKAKK N ERHA RCD+ELK+SVA+KMKDE+GFYYPHNLDFRGRAYPMH HLNH
Sbjct: 523  TWKWSVRKAKKINRERHALRCDVELKISVAQKMKDEEGFYYPHNLDFRGRAYPMHPHLNH 582

Query: 1263 LSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIFDS 1442
            LSSDLCRGVLEFA GRPL K GLHWLKIHLAN+YAGGV KLSY+ R  FVENHL+++FDS
Sbjct: 583  LSSDLCRGVLEFASGRPLGKTGLHWLKIHLANVYAGGVDKLSYEARAAFVENHLEEVFDS 642

Query: 1443 AERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAAL 1622
            A  PI G RWWL AEDPFQCLAAC++L+ AL SSSPH+  S+LPIHQDGSCNGLQHYAAL
Sbjct: 643  ATNPINGNRWWLSAEDPFQCLAACIDLTGALNSSSPHSFISYLPIHQDGSCNGLQHYAAL 702

Query: 1623 GRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVDRK 1802
            GRDS EAAAVNLVAG+ PADVYSEIA RV  ++++D  KDP + P A LAK+L+DQVDRK
Sbjct: 703  GRDSKEAAAVNLVAGEEPADVYSEIAVRVREIMEKDSRKDPKTDPHAVLAKVLVDQVDRK 762

Query: 1803 LVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAA 1982
            LVKQTVMTSVYGVT++GAREQIKRRLEE+GVI+DD+LLF A+CY+A VTM+ALG++FQAA
Sbjct: 763  LVKQTVMTSVYGVTFVGAREQIKRRLEEKGVITDDRLLFSAACYSAKVTMSALGQLFQAA 822

Query: 1983 RSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGDCVD 2162
            R IM WLGDCAKVIASENQPVRW TPLGLPVVQPY KS+RHLI+TSLQVLALQ+EG+ ++
Sbjct: 823  RGIMDWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSKRHLIKTSLQVLALQQEGEGIE 882

Query: 2163 SKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILRERF 2342
             K+QRTAFPPN+VHSLDG+HMMMTA ACRDAGL FAGVHDSFWTHACD++KMNQILR +F
Sbjct: 883  VKKQRTAFPPNYVHSLDGTHMMMTAVACRDAGLQFAGVHDSFWTHACDVEKMNQILRVKF 942

Query: 2343 VELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            VELY+ PILENLLESFQT++P   FP LP RGDFDL +VLESPYFFN
Sbjct: 943  VELYNMPILENLLESFQTAYPASTFPPLPERGDFDLEEVLESPYFFN 989


>ref|XP_006453567.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556793|gb|ESR66807.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 986

 Score = 1192 bits (3084), Expect = 0.0
 Identities = 584/827 (70%), Positives = 685/827 (82%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQESKRQKASY 182
            EAWE+  +EY+EL  +M EK+L PNLP++K LFLGWF PL+EAI +EQ +Q +K+QKA+Y
Sbjct: 188  EAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAY 247

Query: 183  APYIGLLPAEKMAVIVMHKMMGLLMVGPDEGSVRVVQAAVYVGDAIEQEVRIHNFLERSK 362
            AP+I LLPA+KMAVIVMHKMMGL+M G ++  V+VVQAAV++G AIEQE+RIH+FLE++K
Sbjct: 248  APHIELLPADKMAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK 307

Query: 363  NSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQAKL 542
            N + RKKI  + ++   KE E+ R+ V  LI             N+E TK WGRD QAKL
Sbjct: 308  NYK-RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE-TKPWGRDTQAKL 365

Query: 543  GSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDPLV 722
            GS L++LLIE A+VQ PVN      P++ PAFRH  KTI+K PG+K  KR G +ECDPLV
Sbjct: 366  GSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLV 425

Query: 723  RKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPKKQ 902
             +GL  +A+HM+IPY+PMLVPP+ WKGY KGG+LFLPSYVMRTHG+R+Q +A++SV    
Sbjct: 426  LEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC 485

Query: 903  MQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLMEIQ 1082
            M+KVF ALDTLG TKWRVNK+VLSV+ES+WV+GGNIAGLV R D  +PEKPLSED+ E+Q
Sbjct: 486  MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ 545

Query: 1083 KWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNH 1262
            KWK S RKAKK N ERH+QRCD ELKLSVAR+MKDE+GFYYPHNLDFRGRAYPMH HLNH
Sbjct: 546  KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605

Query: 1263 LSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIFDS 1442
            LSSD+CRGVLEFAEGRPL K+GL WLKIHLANL++                         
Sbjct: 606  LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS------------------------- 640

Query: 1443 AERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAAL 1622
             E PI G RWWL AEDPFQCLAAC+NL+EALKSSSPH+V SHLPIHQDGSCNGLQHYAAL
Sbjct: 641  -ENPINGSRWWLTAEDPFQCLAACINLAEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 699

Query: 1623 GRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVDRK 1802
            GR++LEAAAVNLVAG++PADVYSEIA RV  ++KRD  KD +  P A LAKILIDQVDRK
Sbjct: 700  GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDHSKHPQALLAKILIDQVDRK 759

Query: 1803 LVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAA 1982
            LVKQTVMTSVYGVT++GAREQIKRRLEE+G I+DD+ LF A+CYAA VT+TALGE+F+AA
Sbjct: 760  LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAA 819

Query: 1983 RSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGDCVD 2162
            RSIMGWLGDCAKVIASENQPVRW TPLGLPVVQPY K+ERHLIRTSLQVLALQREG+ V+
Sbjct: 820  RSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVE 879

Query: 2163 SKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILRERF 2342
             ++QRTAFPPNFVHSLDGSHMMMTA ACRDAGLHFAGVHDSFWTHACD+D+MNQILR++F
Sbjct: 880  IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKF 939

Query: 2343 VELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            VELY+ P+LENLLESFQTS+PTL FP+LP RG+FDL +VLESPYFFN
Sbjct: 940  VELYNMPMLENLLESFQTSYPTLSFPSLPERGNFDLEEVLESPYFFN 986


>ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
            gi|3914826|sp|O24600.1|RPOT3_ARATH RecName:
            Full=DNA-directed RNA polymerase 3, chloroplastic; Flags:
            Precursor gi|2330560|emb|CAA69972.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|2330564|emb|CAA69717.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|4115372|gb|AAD03373.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|110739160|dbj|BAF01496.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 993

 Score = 1192 bits (3084), Expect = 0.0
 Identities = 582/830 (70%), Positives = 688/830 (82%), Gaps = 3/830 (0%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQESKRQK--A 176
            EAWE+  +EYR+L +EMCEK L PNLPYVK +FLGWF+PL + I +EQ LQ++K +K  A
Sbjct: 172  EAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRA 231

Query: 177  SYAPYIGLLPAEKMAVIVMHKMMGLLMVGPDEGSVRVVQAAVYVGDAIEQEVRIHNFLER 356
            +YAP+I LLPA+KMAVIVMHKMMGL+M G ++G ++VVQAAV +G AIEQEVRIHNFL+R
Sbjct: 232  AYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKR 291

Query: 357  S-KNSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQ 533
            + KN+ G    D +E+    KE ++ R+ V  LI             + E TK WGR  Q
Sbjct: 292  TRKNNAG----DSQEE---LKEKQLLRKRVNSLIRRKRIIDALKVVKS-EGTKPWGRATQ 343

Query: 534  AKLGSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECD 713
            AKLGS L++LLIEAA+VQPP+ Q  D  PE  PAFRH  KT+ K PG K  +R G IECD
Sbjct: 344  AKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECD 403

Query: 714  PLVRKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVP 893
             L+  GL  +A+HM+IPY+PMLVPP+ WKGY KGG+LFLPSY+MRTHG+++Q DA++ + 
Sbjct: 404  SLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDIS 463

Query: 894  KKQMQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLM 1073
             K   +VF ALDTLG TKWRVN+ +L VVE LW +GGNIAGLV RED  +PEKP SED  
Sbjct: 464  HKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPE 523

Query: 1074 EIQKWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSH 1253
            E+Q WK S+RKA K N ERH+ RCD+ELKLSVARKMKDE+GFYYPHNLDFRGRAYPMH H
Sbjct: 524  ELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPH 583

Query: 1254 LNHLSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDI 1433
            LNHLSSDLCRG LEFAEGRPL K+GLHWLKIHLANLYAGGV KLS+D RL FVENHLDDI
Sbjct: 584  LNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDI 643

Query: 1434 FDSAERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHY 1613
             DSAE PI GKRWWLKAEDPFQCLAAC+ L++ALKS SP++V SHLPIHQDGSCNGLQHY
Sbjct: 644  MDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHY 703

Query: 1614 AALGRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQV 1793
            AALGRDS EAAAVNLVAG++PADVYSEI+ RV  ++K+D  KDP S P+A LAKILI QV
Sbjct: 704  AALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQV 763

Query: 1794 DRKLVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMF 1973
            DRKLVKQTVMTSVYGVTY+GAREQIKRRLEE+GVI+D+++LF A+CY+A VT+ ALGE+F
Sbjct: 764  DRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIF 823

Query: 1974 QAARSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGD 2153
            +AAR+IM WLGDCAK+IAS+N PVRW+TPLGLPVVQPY +SERHLIRTSLQVLALQREG+
Sbjct: 824  EAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGN 883

Query: 2154 CVDSKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILR 2333
             VD ++QRTAFPPNFVHSLDG+HMMMTA ACR+AGL+FAGVHDS+WTHACD+D MN+ILR
Sbjct: 884  TVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILR 943

Query: 2334 ERFVELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            E+FVELY+ PILE+LL+SFQ S+P L FP +P RGDFDL +VL+S YFFN
Sbjct: 944  EKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEVLKSQYFFN 993


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score = 1191 bits (3080), Expect = 0.0
 Identities = 579/828 (69%), Positives = 682/828 (82%), Gaps = 1/828 (0%)
 Frame = +3

Query: 3    EAWEKRAEEYRELVREMCEKKLVPNLPYVKSLFLGWFEPLTEAIAKEQSLQESKRQKASY 182
            EAWE+  EEYREL REMCEKKL PNLPYVK L LGWFEPL +AI KEQ+ + + + +A++
Sbjct: 152  EAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAF 211

Query: 183  APYIGLLPAEKMAVIVMHKMMGLLMVG-PDEGSVRVVQAAVYVGDAIEQEVRIHNFLERS 359
            AP+I  LPA+KMAVIVMHK+MGLLM+G  +E  V+VVQAAV +G A+E EVRIHNFLE++
Sbjct: 212  APHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKT 271

Query: 360  KNSRGRKKIDDEEQKATCKEGEIRRQYVEKLITXXXXXXXXXXXXNDEDTKSWGRDAQAK 539
            K  + +     + Q+   KE  I R+ V+ LI             ++E  +SWGRD QAK
Sbjct: 272  KKLQ-KHMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKSEEP-ESWGRDTQAK 329

Query: 540  LGSCLIKLLIEAAFVQPPVNQLSDCQPEIWPAFRHTIKTIMKEPGRKGAKRCGFIECDPL 719
            LG  L++LL E A+VQ PV+Q +D  P+I PAFRH  K   ++PG+   K+ G IECDPL
Sbjct: 330  LGCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKKYGVIECDPL 389

Query: 720  VRKGLHSTARHMVIPYMPMLVPPRNWKGYGKGGHLFLPSYVMRTHGARQQLDAIRSVPKK 899
            V  G+  T + M+IPY+PMLVPP+ W+GY KGG+LFLPSY+MRTHG+R+Q DA+R VP K
Sbjct: 390  VVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTK 449

Query: 900  QMQKVFGALDTLGKTKWRVNKRVLSVVESLWVNGGNIAGLVAREDAFVPEKPLSEDLMEI 1079
            QMQ+V+ ALDTLG TKWRVNKR+L+VVES+W  GGNIAGLV R+D  +PE   S+D+ME+
Sbjct: 450  QMQQVYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEV 509

Query: 1080 QKWKQSSRKAKKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLN 1259
            +KWK   RK+KK N E H+QRCD ELKLSVARK+KDE+GFYYPHNLDFRGRAYPMH HLN
Sbjct: 510  KKWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLN 569

Query: 1260 HLSSDLCRGVLEFAEGRPLRKAGLHWLKIHLANLYAGGVAKLSYDMRLTFVENHLDDIFD 1439
            HLSSDLCRG+LEFAEGRPL K+GL WLKIHLA+LYAGGV KL YD RL FVENH+ DI D
Sbjct: 570  HLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILD 629

Query: 1440 SAERPIEGKRWWLKAEDPFQCLAACMNLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAA 1619
            SA  P+ G RWWL AEDPFQCLAAC+NLSEALKSSSPH V SHLPIHQDGSCNGLQHYAA
Sbjct: 630  SANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAA 689

Query: 1620 LGRDSLEAAAVNLVAGDRPADVYSEIAARVLNLLKRDCMKDPASCPSAFLAKILIDQVDR 1799
            LGRDS+EAAAVNLVAG++PADVY+EIA RV ++++ D +KDPA  P+A LAK+LIDQVDR
Sbjct: 690  LGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDR 749

Query: 1800 KLVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQA 1979
            KLVKQTVMTSVYGVTY+GAREQIKRRLEE+G+I DD+LLF ASCYAA VT+ ALGE+FQA
Sbjct: 750  KLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQA 809

Query: 1980 ARSIMGWLGDCAKVIASENQPVRWVTPLGLPVVQPYQKSERHLIRTSLQVLALQREGDCV 2159
            AR  M WLGDCAKVIA ENQPVRW TPLGLPVVQPY K++RH+IRTSLQ+LALQREGD V
Sbjct: 810  ARGTMTWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQILALQREGDAV 869

Query: 2160 DSKRQRTAFPPNFVHSLDGSHMMMTAAACRDAGLHFAGVHDSFWTHACDIDKMNQILRER 2339
            + ++QRTAFPPNFVHSLDGSHMMMTA ACRDAGL FAGVHDSFWTHACD+D+MN+ILRE+
Sbjct: 870  EVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREK 929

Query: 2340 FVELYDAPILENLLESFQTSFPTLKFPTLPGRGDFDLTKVLESPYFFN 2483
            FVELY  PILE+LLE+FQ S+P L FP LP RGDF+L +VLESPYFFN
Sbjct: 930  FVELYSLPILEDLLENFQKSYPALTFPPLPKRGDFNLREVLESPYFFN 977