BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00032624
         (346 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003534039.1| PREDICTED: cleavage and polyadenylation spec...   166   1e-39
ref|NP_199979.2| cleavage and polyadenylation specificity factor...   164   9e-39
dbj|BAB11613.1| cleavage and polyadenylation specificity factor ...   164   9e-39
gb|AAN41460.1| putative cleavage and polyadenylation specificity...   164   9e-39
ref|XP_002318462.1| predicted protein [Populus trichocarpa] gi|2...   161   6e-38

>ref|XP_003534039.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           1-like [Glycine max]
          Length = 1449

 Score =  166 bits (421), Expect = 1e-39
 Identities = 83/115 (72%), Positives = 99/115 (86%), Gaps = 3/115 (2%)
 Frame = +3

Query: 3   GCKGIWTVYHKNLRN---DSVKGSSDEDEYHAFLIISLENRTMVLQTANNLEEVTENVDY 173
           GCKGIWTVYHK+ R+   DS K + D+DEYHA+LIISLE RTMVL+TA+ L EVTE+VDY
Sbjct: 569 GCKGIWTVYHKSTRSHNADSSKMADDDDEYHAYLIISLEARTMVLETADLLSEVTESVDY 628

Query: 174 YVQGSTIAAGNLFGRRRVIQIFAGGARILDGAFMTQDLSFKSSNSEAGAASEVTI 338
           YVQG T+AAGNLFGRRRVIQ++  GARILDG+FMTQD+SF +SNSE+G+ASE  I
Sbjct: 629 YVQGKTLAAGNLFGRRRVIQVYERGARILDGSFMTQDVSFGASNSESGSASESAI 683


>ref|NP_199979.2| cleavage and polyadenylation specificity factor subunit 1
           [Arabidopsis thaliana]
           gi|290457637|sp|Q9FGR0.2|CPSF1_ARATH RecName:
           Full=Cleavage and polyadenylation specificity factor
           subunit 1; AltName: Full=Cleavage and polyadenylation
           specificity factor 160 kDa subunit; Short=AtCPSF160;
           Short=CPSF 160 kDa subunit gi|332008729|gb|AED96112.1|
           cleavage and polyadenylation specificity factor subunit
           1 [Arabidopsis thaliana]
          Length = 1442

 Score =  164 bits (414), Expect = 9e-39
 Identities = 84/117 (71%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
 Frame = +3

Query: 3   GCKGIWTVYHKNLRN---DSVKGSSDEDEYHAFLIISLENRTMVLQTANNLEEVTENVDY 173
           GCKGIWTVYHK+ R    DS K ++DEDEYHA+LIISLE RTMVL+TA+ L EVTE+VDY
Sbjct: 574 GCKGIWTVYHKSSRGHNADSSKMAADEDEYHAYLIISLEARTMVLETADLLTEVTESVDY 633

Query: 174 YVQGSTIAAGNLFGRRRVIQIFAGGARILDGAFMTQDLSFKSSNSEAGAASEVTIVS 344
           YVQG TIAAGNLFGRRRVIQ+F  GARILDG+FM Q+LSF +SNSE+ + SE + VS
Sbjct: 634 YVQGRTIAAGNLFGRRRVIQVFEHGARILDGSFMNQELSFGASNSESNSGSESSTVS 690


>dbj|BAB11613.1| cleavage and polyadenylation specificity factor subunit
           [Arabidopsis thaliana]
          Length = 1448

 Score =  164 bits (414), Expect = 9e-39
 Identities = 84/117 (71%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
 Frame = +3

Query: 3   GCKGIWTVYHKNLRN---DSVKGSSDEDEYHAFLIISLENRTMVLQTANNLEEVTENVDY 173
           GCKGIWTVYHK+ R    DS K ++DEDEYHA+LIISLE RTMVL+TA+ L EVTE+VDY
Sbjct: 580 GCKGIWTVYHKSSRGHNADSSKMAADEDEYHAYLIISLEARTMVLETADLLTEVTESVDY 639

Query: 174 YVQGSTIAAGNLFGRRRVIQIFAGGARILDGAFMTQDLSFKSSNSEAGAASEVTIVS 344
           YVQG TIAAGNLFGRRRVIQ+F  GARILDG+FM Q+LSF +SNSE+ + SE + VS
Sbjct: 640 YVQGRTIAAGNLFGRRRVIQVFEHGARILDGSFMNQELSFGASNSESNSGSESSTVS 696


>gb|AAN41460.1| putative cleavage and polyadenylation specificity factor 160 kDa
           subunit [Arabidopsis thaliana]
          Length = 1442

 Score =  164 bits (414), Expect = 9e-39
 Identities = 84/117 (71%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
 Frame = +3

Query: 3   GCKGIWTVYHKNLRN---DSVKGSSDEDEYHAFLIISLENRTMVLQTANNLEEVTENVDY 173
           GCKGIWTVYHK+ R    DS K ++DEDEYHA+LIISLE RTMVL+TA+ L EVTE+VDY
Sbjct: 574 GCKGIWTVYHKSSRGHNADSSKMAADEDEYHAYLIISLEARTMVLETADLLTEVTESVDY 633

Query: 174 YVQGSTIAAGNLFGRRRVIQIFAGGARILDGAFMTQDLSFKSSNSEAGAASEVTIVS 344
           YVQG TIAAGNLFGRRRVIQ+F  GARILDG+FM Q+LSF +SNSE+ + SE + VS
Sbjct: 634 YVQGRTIAAGNLFGRRRVIQVFEHGARILDGSFMNQELSFGASNSESNSGSESSTVS 690


>ref|XP_002318462.1| predicted protein [Populus trichocarpa] gi|222859135|gb|EEE96682.1|
           predicted protein [Populus trichocarpa]
          Length = 1455

 Score =  161 bits (407), Expect = 6e-38
 Identities = 82/116 (70%), Positives = 97/116 (83%), Gaps = 3/116 (2%)
 Frame = +3

Query: 3   GCKGIWTVYHKNLRN---DSVKGSSDEDEYHAFLIISLENRTMVLQTANNLEEVTENVDY 173
           GCKGIWTVYHKN R    DS+K +SD DEYHA+LIIS+E RTMVL+TA++L EVTE+VDY
Sbjct: 577 GCKGIWTVYHKNARIHSVDSLKMASD-DEYHAYLIISMEARTMVLETADHLTEVTESVDY 635

Query: 174 YVQGSTIAAGNLFGRRRVIQIFAGGARILDGAFMTQDLSFKSSNSEAGAASEVTIV 341
           +VQG TIAAGNLFGRRRV+Q+F  GARILDG+FMTQDLSF  SNSE G +   T++
Sbjct: 636 FVQGRTIAAGNLFGRRRVVQVFERGARILDGSFMTQDLSFGGSNSETGRSESSTVM 691