BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00031462
         (426 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

prf||1211235Q rpoC-like ORF 548                                       122   3e-26
ref|XP_003606033.1| DNA-directed RNA polymerase [Medicago trunca...   118   4e-25
ref|XP_003605607.1| DNA-directed RNA polymerase subunit beta, pa...   118   4e-25
ref|XP_003600568.1| DNA-directed RNA polymerase beta' subunit [M...   118   4e-25
ref|YP_007507102.1| RNA polymerase beta' subunit (chloroplast) [...   111   5e-23

>prf||1211235Q rpoC-like ORF 548
          Length = 548

 Score =  122 bits (306), Expect = 3e-26
 Identities = 57/59 (96%), Positives = 57/59 (96%)
 Frame = -1

Query: 177 RGGDPIGSYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTPGFDTFRNREI 1
           RGGDPI SYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTT GFDTFRNREI
Sbjct: 1   RGGDPIESYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREI 59


>ref|XP_003606033.1| DNA-directed RNA polymerase [Medicago truncatula]
            gi|355507088|gb|AES88230.1| DNA-directed RNA polymerase
            [Medicago truncatula]
          Length = 1748

 Score =  118 bits (296), Expect = 4e-25
 Identities = 58/71 (81%), Positives = 61/71 (85%), Gaps = 1/71 (1%)
 Frame = -1

Query: 210  RMKGNFHVRF*RGG-DPIGSYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTT 34
            RM+GN HVRF +G    IGSYPNFSFARP+ KKPTFLRLRG FEYEIQSWKYSIPLFF T
Sbjct: 1198 RMRGNPHVRFSKGEIHLIGSYPNFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFAT 1257

Query: 33   PGFDTFRNREI 1
             GFDTFRNREI
Sbjct: 1258 QGFDTFRNREI 1268


>ref|XP_003605607.1| DNA-directed RNA polymerase subunit beta, partial [Medicago
           truncatula] gi|355506662|gb|AES87804.1| DNA-directed RNA
           polymerase subunit beta, partial [Medicago truncatula]
          Length = 2049

 Score =  118 bits (296), Expect = 4e-25
 Identities = 58/71 (81%), Positives = 61/71 (85%), Gaps = 1/71 (1%)
 Frame = -1

Query: 210 RMKGNFHVRF*RGG-DPIGSYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTT 34
           RM+GN HVRF +G    IGSYPNFSFARP+ KKPTFLRLRG FEYEIQSWKYSIPLFF T
Sbjct: 592 RMRGNPHVRFSKGEIHLIGSYPNFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFAT 651

Query: 33  PGFDTFRNREI 1
            GFDTFRNREI
Sbjct: 652 QGFDTFRNREI 662


>ref|XP_003600568.1| DNA-directed RNA polymerase beta' subunit [Medicago truncatula]
           gi|357460575|ref|XP_003600569.1| DNA-directed RNA
           polymerase beta' subunit [Medicago truncatula]
           gi|355489616|gb|AES70819.1| DNA-directed RNA polymerase
           beta' subunit [Medicago truncatula]
           gi|355489617|gb|AES70820.1| DNA-directed RNA polymerase
           beta' subunit [Medicago truncatula]
          Length = 710

 Score =  118 bits (296), Expect = 4e-25
 Identities = 58/71 (81%), Positives = 61/71 (85%), Gaps = 1/71 (1%)
 Frame = -1

Query: 210 RMKGNFHVRF*RGG-DPIGSYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTT 34
           RM+GN HVRF +G    IGSYPNFSFARP+ KKPTFLRLRG FEYEIQSWKYSIPLFF T
Sbjct: 146 RMRGNPHVRFSKGEIHLIGSYPNFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFAT 205

Query: 33  PGFDTFRNREI 1
            GFDTFRNREI
Sbjct: 206 QGFDTFRNREI 216


>ref|YP_007507102.1| RNA polymerase beta' subunit (chloroplast) [Salvia miltiorrhiza]
           gi|401879733|gb|AFQ30920.1| RNA polymerase beta' subunit
           (chloroplast) [Salvia miltiorrhiza]
          Length = 691

 Score =  111 bits (278), Expect = 5e-23
 Identities = 51/51 (100%), Positives = 51/51 (100%)
 Frame = -1

Query: 153 YPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTPGFDTFRNREI 1
           YPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTPGFDTFRNREI
Sbjct: 153 YPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTPGFDTFRNREI 203