BLASTX nr result

ID: Scutellaria24_contig00030105 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00030105
         (373 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002302251.1| predicted protein [Populus trichocarpa] gi|2...   150   1e-34
ref|XP_003614775.1| DIS3-like exonuclease [Medicago truncatula] ...   149   2e-34
ref|XP_003614757.1| DIS3-like exonuclease [Medicago truncatula] ...   149   2e-34
ref|XP_002306619.1| predicted protein [Populus trichocarpa] gi|2...   148   5e-34
gb|AAG51632.1|AC012193_14 putative 3'-5' exoribonuclease, 3' par...   145   3e-33

>ref|XP_002302251.1| predicted protein [Populus trichocarpa] gi|222843977|gb|EEE81524.1|
           predicted protein [Populus trichocarpa]
          Length = 860

 Score =  150 bits (379), Expect = 1e-34
 Identities = 73/122 (59%), Positives = 90/122 (73%)
 Frame = -3

Query: 368 NGNIRVGVHIADVSYFVLPDTALDIDARIRSATVYXXXXXXXXXXXXLSDDLASVNPGVD 189
           NG +RVGVHIADVSYFVLPDTALD++A+ RS +VY            LS++L S+NPGVD
Sbjct: 422 NGLVRVGVHIADVSYFVLPDTALDMEAQFRSTSVYMLRRKIPMLPPLLSENLGSLNPGVD 481

Query: 188 RLSFSIFWDMDSAGGVVDRWIGRTIIRSCCKLSYEHAQDIVNGLTDFQDSGQIVKHWPNL 9
           RL+FSIFWD +S+G VVDRWI RT+I+SCCKLSYEHAQ IV+G+ D +         P L
Sbjct: 482 RLAFSIFWDFNSSGNVVDRWIDRTVIQSCCKLSYEHAQGIVDGMIDTETCNTFGDSLPQL 541

Query: 8   YG 3
           +G
Sbjct: 542 HG 543


>ref|XP_003614775.1| DIS3-like exonuclease [Medicago truncatula]
           gi|355516110|gb|AES97733.1| DIS3-like exonuclease
           [Medicago truncatula]
          Length = 1162

 Score =  149 bits (376), Expect = 2e-34
 Identities = 70/122 (57%), Positives = 92/122 (75%)
 Frame = -3

Query: 368 NGNIRVGVHIADVSYFVLPDTALDIDARIRSATVYXXXXXXXXXXXXLSDDLASVNPGVD 189
           NGN RVG+HIADVSYFVLPDTALD++A+ RS +VY            +S+++ S+NPGVD
Sbjct: 538 NGNYRVGIHIADVSYFVLPDTALDVEAQFRSTSVYLLQKKLPMLSALISENIGSLNPGVD 597

Query: 188 RLSFSIFWDMDSAGGVVDRWIGRTIIRSCCKLSYEHAQDIVNGLTDFQDSGQIVKHWPNL 9
           RL+FS+  D++ AG VVDRWIGRT+I+SCCKLSYEHAQDI++G  +F+ S      +P L
Sbjct: 598 RLAFSMLLDLNVAGDVVDRWIGRTVIQSCCKLSYEHAQDIIDGAFNFESSSFHEDGYPKL 657

Query: 8   YG 3
           +G
Sbjct: 658 HG 659


>ref|XP_003614757.1| DIS3-like exonuclease [Medicago truncatula]
           gi|355516092|gb|AES97715.1| DIS3-like exonuclease
           [Medicago truncatula]
          Length = 1051

 Score =  149 bits (376), Expect = 2e-34
 Identities = 70/122 (57%), Positives = 92/122 (75%)
 Frame = -3

Query: 368 NGNIRVGVHIADVSYFVLPDTALDIDARIRSATVYXXXXXXXXXXXXLSDDLASVNPGVD 189
           NGN RVG+HIADVSYFVLPDTALD++A+ RS +VY            +S+++ S+NPGVD
Sbjct: 503 NGNYRVGIHIADVSYFVLPDTALDVEAQFRSTSVYLLQKKLPMLSALISENIGSLNPGVD 562

Query: 188 RLSFSIFWDMDSAGGVVDRWIGRTIIRSCCKLSYEHAQDIVNGLTDFQDSGQIVKHWPNL 9
           RL+FS+  D++ AG VVDRWIGRT+I+SCCKLSYEHAQDI++G  +F+ S      +P L
Sbjct: 563 RLAFSMLLDLNVAGDVVDRWIGRTVIQSCCKLSYEHAQDIIDGAFNFESSSFHEDGYPKL 622

Query: 8   YG 3
           +G
Sbjct: 623 HG 624


>ref|XP_002306619.1| predicted protein [Populus trichocarpa] gi|222856068|gb|EEE93615.1|
           predicted protein [Populus trichocarpa]
          Length = 944

 Score =  148 bits (373), Expect = 5e-34
 Identities = 75/130 (57%), Positives = 95/130 (73%), Gaps = 8/130 (6%)
 Frame = -3

Query: 368 NGNIRVGVHIADVSYFVLPDTALDIDARIRSATVYXXXXXXXXXXXXLSDDLASVNPGVD 189
           NG +RVGVHI DVSYFVLPDTALD +A+IRS +VY            LS D+ S+NPGVD
Sbjct: 380 NGLVRVGVHITDVSYFVLPDTALDKEAQIRSTSVYMSQRKIPMLPPLLSKDVGSLNPGVD 439

Query: 188 RLSFSIFWDMDSAGGVVDRWIGRTIIRSCCKLSYEHAQDIVNGLTD------FQDSGQIV 27
           RL+FSIFW+++S+G VVDRWIGRT+IRSCCKLSYEHA++I +G+ D      F+D  Q+ 
Sbjct: 440 RLAFSIFWNLNSSGNVVDRWIGRTVIRSCCKLSYEHAREIFDGMIDAETHNNFRDLPQLH 499

Query: 26  KH--WPNLYG 3
            H  W ++ G
Sbjct: 500 GHFEWADVIG 509


>gb|AAG51632.1|AC012193_14 putative 3'-5' exoribonuclease, 3' partial; 3320-1 [Arabidopsis
           thaliana]
          Length = 935

 Score =  145 bits (366), Expect = 3e-33
 Identities = 70/121 (57%), Positives = 89/121 (73%)
 Frame = -3

Query: 365 GNIRVGVHIADVSYFVLPDTALDIDARIRSATVYXXXXXXXXXXXXLSDDLASVNPGVDR 186
           G  RVGVHIADVSYFVLP+TALD +AR RS +VY            LS+++ S++PG DR
Sbjct: 507 GFFRVGVHIADVSYFVLPETALDTEARFRSTSVYLMQRKISMLPPLLSENVGSLSPGADR 566

Query: 185 LSFSIFWDMDSAGGVVDRWIGRTIIRSCCKLSYEHAQDIVNGLTDFQDSGQIVKHWPNLY 6
           L+FSI WD++  G V+DRWIGRTIIRSCCKLSY+HAQDI++G +D  ++G     WP L+
Sbjct: 567 LAFSILWDLNREGDVIDRWIGRTIIRSCCKLSYDHAQDIIDGKSDVAENG-----WPALH 621

Query: 5   G 3
           G
Sbjct: 622 G 622


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