BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00029607
         (345 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002883182.1| pseudouridine synthase family protein [Arabi...    67   2e-19
ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...    65   2e-19
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...    66   3e-19
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...    60   4e-16
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...    58   6e-14

>ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297329022|gb|EFH59441.1| pseudouridine
           synthase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 477

 Score = 66.6 bits (161), Expect(2) = 2e-19
 Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
 Frame = -3

Query: 202 EFKEQRPRRVGAKDLMDVGDRIFLPKSVDSKSPSA--ATENPILFNEEELKFVQSLELYK 29
           E +  + +RV AK+ ++VGDRI+LP SVD+ +P    A +     +EEE KFV SL LYK
Sbjct: 129 ELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPPTPPAKKESFQCSEEERKFVCSLVLYK 188

Query: 28  DPAIIVINK 2
           DPAIIV+NK
Sbjct: 189 DPAIIVLNK 197



 Score = 53.9 bits (128), Expect(2) = 2e-19
 Identities = 24/47 (51%), Positives = 34/47 (72%), Gaps = 7/47 (14%)
 Frame = -1

Query: 345 PPFTPTADGSSIGKNLYGH-------PDDAKTTALKWILKCCPNLPR 226
           PPF+PT DG+++GK+L           D++KTTAL+WIL+C P+LPR
Sbjct: 59  PPFSPTIDGTAVGKDLLSDGDSVKASTDNSKTTALRWILRCRPDLPR 105


>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis
           vinifera] gi|296090438|emb|CBI40257.3| unnamed protein
           product [Vitis vinifera]
          Length = 476

 Score = 65.1 bits (157), Expect(2) = 2e-19
 Identities = 36/65 (55%), Positives = 48/65 (73%)
 Frame = -3

Query: 196 KEQRPRRVGAKDLMDVGDRIFLPKSVDSKSPSAATENPILFNEEELKFVQSLELYKDPAI 17
           +E R +RV AKDLM++GD+I LP +V+ + PS   E     N+EE+ FV +LELYKDPAI
Sbjct: 137 QEHRLKRVAAKDLMNLGDQILLPITVE-EFPSEKHEYHC--NDEEINFVHNLELYKDPAI 193

Query: 16  IVINK 2
           IV+NK
Sbjct: 194 IVVNK 198



 Score = 55.5 bits (132), Expect(2) = 2e-19
 Identities = 26/49 (53%), Positives = 30/49 (61%), Gaps = 9/49 (18%)
 Frame = -1

Query: 345 PPFTPTADGSSIGKNLYGHPDD---------AKTTALKWILKCCPNLPR 226
           P FTP  D SS+GK L GH  D         A TTALKW+++CCP LPR
Sbjct: 60  PAFTPVVDASSLGKVLSGHRTDLNTGNTTAGASTTALKWVVRCCPQLPR 108


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
           gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
           pseudourine synthase 4, mitochondrial; AltName: Full=RNA
           pseudouridylate synthase 4; AltName: Full=RNA-uridine
           isomerase 4; Flags: Precursor
           gi|11994467|dbj|BAB02469.1| unnamed protein product
           [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
           thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
           synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score = 65.9 bits (159), Expect(2) = 3e-19
 Identities = 35/69 (50%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
 Frame = -3

Query: 202 EFKEQRPRRVGAKDLMDVGDRIFLPKSVDSKSPSA--ATENPILFNEEELKFVQSLELYK 29
           E +  + +RV AK+ ++VGDRI+LP SVD+ +P    A +     ++EE KFV SL LYK
Sbjct: 129 ELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPQTPPAKKESFQCSDEERKFVCSLVLYK 188

Query: 28  DPAIIVINK 2
           DPAIIV+NK
Sbjct: 189 DPAIIVLNK 197



 Score = 53.9 bits (128), Expect(2) = 3e-19
 Identities = 24/47 (51%), Positives = 34/47 (72%), Gaps = 7/47 (14%)
 Frame = -1

Query: 345 PPFTPTADGSSIGKNLYGH-------PDDAKTTALKWILKCCPNLPR 226
           PPF+PT DG+++GK+L           D++KTTAL+WIL+C P+LPR
Sbjct: 59  PPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRPDLPR 105


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 536

 Score = 60.1 bits (144), Expect(2) = 4e-16
 Identities = 33/64 (51%), Positives = 42/64 (65%)
 Frame = -3

Query: 193 EQRPRRVGAKDLMDVGDRIFLPKSVDSKSPSAATENPILFNEEELKFVQSLELYKDPAII 14
           E + +RV AKDLM+VGDRIFLP SV +       +      E+E  F++ LELYKD AII
Sbjct: 199 EHKTKRVAAKDLMNVGDRIFLPISVQA---LPFEKQKCHCGEKEANFIRGLELYKDEAII 255

Query: 13  VINK 2
           V+NK
Sbjct: 256 VVNK 259



 Score = 49.3 bits (116), Expect(2) = 4e-16
 Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
 Frame = -1

Query: 345 PPFTPTADGSSIGKNLYGHPD---DAKTTALKWILKCCPNLPR 226
           PP+T T  GS++GK L          +TTALKW+L+CCP LPR
Sbjct: 132 PPYTSTISGSALGKALSATATAKASTETTALKWVLRCCPELPR 174


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score = 58.2 bits (139), Expect(2) = 6e-14
 Identities = 34/69 (49%), Positives = 46/69 (66%)
 Frame = -3

Query: 208 NAEFKEQRPRRVGAKDLMDVGDRIFLPKSVDSKSPSAATENPILFNEEELKFVQSLELYK 29
           N E ++Q  +RV AKD+++VGD+IFLP SV   S     +     N+EE  F+ SL L+K
Sbjct: 135 NLEARDQL-KRVAAKDILNVGDQIFLPMSVQVFSTEKTRD---YCNKEEETFMHSLVLHK 190

Query: 28  DPAIIVINK 2
           DPAI+VINK
Sbjct: 191 DPAILVINK 199



 Score = 43.9 bits (102), Expect(2) = 6e-14
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
 Frame = -1

Query: 345 PPFTPTADGSSIGKNLYGHPDDAKT-------TALKWILKCCPNLPR 226
           PP+T T +GS +G  +      A+        TALKW+++CCP LPR
Sbjct: 64  PPYTATVNGSILGNRIMNGGGQAELGASTAAITALKWVIRCCPELPR 110