BLASTX nr result

ID: Scutellaria24_contig00028738 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00028738
         (417 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA39759.1| petA [Pisum sativum]                                  129   2e-28
gb|AAA85363.1| cytochrome f [Pisum sativum]                           129   2e-28
ref|XP_003606016.1| Apocytochrome F [Medicago truncatula] gi|355...   128   5e-28
gb|ABG74852.1| cytochrome f [Menodora longiflora]                     125   4e-27
ref|YP_007353928.1| apocytochrome f precursor of cytochrome b6/f...   124   6e-27

>emb|CAA39759.1| petA [Pisum sativum]
          Length = 192

 Score =  129 bits (325), Expect = 2e-28
 Identities = 65/86 (75%), Positives = 66/86 (76%)
 Frame = +2

Query: 158 FRIND*TMQTRTTFSWIKEHIIRSISVXXXXXXXXXXXXXXAYPIFAQQGYENPREATGR 337
           FRI D TMQTR  FSWIK+ I RSISV              AYPIFAQQGYENPREATGR
Sbjct: 16  FRIKDCTMQTRNAFSWIKKEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGR 75

Query: 338 IVCANCHLANKPVDIEVPQAVLPDTV 415
           IVCANCHLANKPVDIEVPQAVLPDTV
Sbjct: 76  IVCANCHLANKPVDIEVPQAVLPDTV 101


>gb|AAA85363.1| cytochrome f [Pisum sativum]
          Length = 342

 Score =  129 bits (325), Expect = 2e-28
 Identities = 65/86 (75%), Positives = 66/86 (76%)
 Frame = +2

Query: 158 FRIND*TMQTRTTFSWIKEHIIRSISVXXXXXXXXXXXXXXAYPIFAQQGYENPREATGR 337
           FRI D TMQTR  FSWIK+ I RSISV              AYPIFAQQGYENPREATGR
Sbjct: 16  FRIKDCTMQTRNAFSWIKKEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGR 75

Query: 338 IVCANCHLANKPVDIEVPQAVLPDTV 415
           IVCANCHLANKPVDIEVPQAVLPDTV
Sbjct: 76  IVCANCHLANKPVDIEVPQAVLPDTV 101


>ref|XP_003606016.1| Apocytochrome F [Medicago truncatula] gi|355507071|gb|AES88213.1|
           Apocytochrome F [Medicago truncatula]
          Length = 751

 Score =  128 bits (321), Expect = 5e-28
 Identities = 64/84 (76%), Positives = 65/84 (77%)
 Frame = +2

Query: 164 IND*TMQTRTTFSWIKEHIIRSISVXXXXXXXXXXXXXXAYPIFAQQGYENPREATGRIV 343
           +ND TMQTR  FSWIKE I RSISV              AYPIFAQQGYENPREATGRIV
Sbjct: 445 MNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIV 504

Query: 344 CANCHLANKPVDIEVPQAVLPDTV 415
           CANCHLANKPVDIEVPQAVLPDTV
Sbjct: 505 CANCHLANKPVDIEVPQAVLPDTV 528


>gb|ABG74852.1| cytochrome f [Menodora longiflora]
          Length = 320

 Score =  125 bits (314), Expect = 4e-27
 Identities = 61/79 (77%), Positives = 63/79 (79%)
 Frame = +2

Query: 179 MQTRTTFSWIKEHIIRSISVXXXXXXXXXXXXXXAYPIFAQQGYENPREATGRIVCANCH 358
           MQTR TFSWIKE I+RSISV              AYPIFAQQGYENPREATGRIVCANCH
Sbjct: 1   MQTRKTFSWIKEQIVRSISVSLMISVMTQTSISSAYPIFAQQGYENPREATGRIVCANCH 60

Query: 359 LANKPVDIEVPQAVLPDTV 415
           LANKPVD+EVPQAVLPDTV
Sbjct: 61  LANKPVDVEVPQAVLPDTV 79


>ref|YP_007353928.1| apocytochrome f precursor of cytochrome b6/f complex (chloroplast)
           [Tectona grandis] gi|438687617|emb|CCP47143.1|
           apocytochrome f precursor of cytochrome b6/f complex
           (chloroplast) [Tectona grandis]
           gi|438688301|emb|CCP47232.1| apocytochrome f precursor
           of cytochrome b6/f complex (chloroplast) [Tectona
           grandis] gi|438688425|emb|CCP47321.1| apocytochrome f
           precursor of cytochrome b6/f complex (chloroplast)
           [Tectona grandis]
          Length = 320

 Score =  124 bits (312), Expect = 6e-27
 Identities = 62/79 (78%), Positives = 62/79 (78%)
 Frame = +2

Query: 179 MQTRTTFSWIKEHIIRSISVXXXXXXXXXXXXXXAYPIFAQQGYENPREATGRIVCANCH 358
           MQTR TFSWIKE I RSISV              AYPIFAQQGYENPREATGRIVCANCH
Sbjct: 1   MQTRNTFSWIKERITRSISVSLMIYIITRTSISSAYPIFAQQGYENPREATGRIVCANCH 60

Query: 359 LANKPVDIEVPQAVLPDTV 415
           LANKPVDIEVPQAVLPDTV
Sbjct: 61  LANKPVDIEVPQAVLPDTV 79


Top