BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00028633
         (312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...   142   3e-32
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...   142   3e-32
emb|CBI36559.3| unnamed protein product [Vitis vinifera]              130   1e-28
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   130   1e-28
ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast ...   129   2e-28

>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic;
           AltName: Full=NictaRpoT3-tom; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3B;
           Flags: Precursor gi|21425667|emb|CAC95021.2| chloroplast
           RNA polymerase [Nicotiana tabacum]
          Length = 977

 Score =  142 bits (358), Expect = 3e-32
 Identities = 68/100 (68%), Positives = 85/100 (85%)
 Frame = -3

Query: 310 APNLPYFKKLMLGWFQPLREAIEKEQNRQRSKKNKAAFAPFIDALPADKMAVIVMHKXXX 131
           APNLPY KKL+LGWF+PLR+AIEKEQN + + K++AAFAP ID+LPADKMAVIVMHK   
Sbjct: 174 APNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMG 233

Query: 130 XXXXXGKEDRCVRVVEAAAKIGVAIEHEIRIHDFLEKEKK 11
                GKE+RCV+VV+AA +IG+A+E+E+RIH+FLEK KK
Sbjct: 234 LLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKK 273


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic;
           AltName: Full=NsRpoT-C; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3;
           Flags: Precursor gi|59800203|sp|P69243.1|RPO3A_TOBAC
           RecName: Full=DNA-directed RNA polymerase 3A,
           chloroplastic; AltName: Full=NictaRpoT3-syl; AltName:
           Full=T7 bacteriophage-type single subunit RNA polymerase
           3A; Flags: Precursor gi|21425641|emb|CAC82576.3|
           phage-type RNA polymerase [Nicotiana sylvestris]
           gi|21425679|emb|CAC95027.2| plastid RNA polymerase
           [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 977

 Score =  142 bits (358), Expect = 3e-32
 Identities = 68/100 (68%), Positives = 85/100 (85%)
 Frame = -3

Query: 310 APNLPYFKKLMLGWFQPLREAIEKEQNRQRSKKNKAAFAPFIDALPADKMAVIVMHKXXX 131
           APNLPY KKL+LGWF+PLR+AIEKEQN + + K++AAFAP ID+LPADKMAVIVMHK   
Sbjct: 175 APNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMG 234

Query: 130 XXXXXGKEDRCVRVVEAAAKIGVAIEHEIRIHDFLEKEKK 11
                GKE+RCV+VV+AA +IG+A+E+E+RIH+FLEK KK
Sbjct: 235 LLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKK 274


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  130 bits (327), Expect = 1e-28
 Identities = 67/99 (67%), Positives = 77/99 (77%)
 Frame = -3

Query: 310 APNLPYFKKLMLGWFQPLREAIEKEQNRQRSKKNKAAFAPFIDALPADKMAVIVMHKXXX 131
           APNLPY K L LGWF+PLREAI+KEQ  QR+KK KAA+AP I+ LPADKMAVIVMHK   
Sbjct: 7   APNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIVMHK-MM 65

Query: 130 XXXXXGKEDRCVRVVEAAAKIGVAIEHEIRIHDFLEKEK 14
                G E+ CVRVV+AA +IG+AIE E+RIH FLEK K
Sbjct: 66  GLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTK 104


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
           vinifera]
          Length = 979

 Score =  130 bits (327), Expect = 1e-28
 Identities = 67/99 (67%), Positives = 77/99 (77%)
 Frame = -3

Query: 310 APNLPYFKKLMLGWFQPLREAIEKEQNRQRSKKNKAAFAPFIDALPADKMAVIVMHKXXX 131
           APNLPY K L LGWF+PLREAI+KEQ  QR+KK KAA+AP I+ LPADKMAVIVMHK   
Sbjct: 178 APNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIVMHK-MM 236

Query: 130 XXXXXGKEDRCVRVVEAAAKIGVAIEHEIRIHDFLEKEK 14
                G E+ CVRVV+AA +IG+AIE E+RIH FLEK K
Sbjct: 237 GLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTK 275


>ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
           [Ricinus communis] gi|223532193|gb|EEF33998.1|
           DNA-directed RNA polymerase 3B, chloroplast precursor,
           putative [Ricinus communis]
          Length = 1000

 Score =  129 bits (325), Expect = 2e-28
 Identities = 67/99 (67%), Positives = 77/99 (77%)
 Frame = -3

Query: 310 APNLPYFKKLMLGWFQPLREAIEKEQNRQRSKKNKAAFAPFIDALPADKMAVIVMHKXXX 131
           APNLPY K L LGWF+PL+E I+ EQN QRSKKNKAAFAP I+ LPADKMAVIVMHK   
Sbjct: 185 APNLPYVKGLFLGWFEPLKEGIKSEQNLQRSKKNKAAFAPHIELLPADKMAVIVMHK-MV 243

Query: 130 XXXXXGKEDRCVRVVEAAAKIGVAIEHEIRIHDFLEKEK 14
                G ED CV +V+AA +IG+AIE E+RIH+FLEK K
Sbjct: 244 GLLMVGHEDGCVPLVQAAVQIGMAIEQEVRIHNFLEKTK 282