BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00028266
         (688 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containi...    89   3e-45
ref|NP_199192.1| pentatricopeptide repeat-containing protein [Ar...    86   2e-38
ref|XP_003595326.1| Pentatricopeptide repeat-containing protein ...    78   2e-38
ref|XP_002863633.1| pentatricopeptide repeat-containing protein ...    86   7e-38
ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containi...    96   5e-34

>ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score = 89.0 bits (219), Expect(3) = 3e-45
 Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
 Frame = +2

Query: 389 AWAM-YIIRNKLSLNHFISTASITFNINFGCLKFAEEMFDHLPHRDTFCFNAMIRGLAIH 565
           AWA  Y++RN L LN F+ TA +      GCL  A ++FD L  RDTFC+NAMI G A+H
Sbjct: 239 AWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVH 298

Query: 566 GNGQKALDLFEIMKQESFAPDEGRHYISSNVC 661
           G+G +AL+L+  MK E   PD     ++   C
Sbjct: 299 GHGNQALELYRNMKLEDLVPDGATIVVTMFAC 330



 Score = 85.1 bits (209), Expect(3) = 3e-45
 Identities = 39/64 (60%), Positives = 49/64 (76%)
 Frame = +2

Query: 2   NNYTYPSLFKAFGACQWLKHGQALHAHVLKFLQPSYDNLVQASLLSFYSKCGRVGVASYF 181
           N++T+PSLFKA  +  WL+HG  LHAHVLKFLQP YD  VQ SLL+FY+K G++ V+ Y 
Sbjct: 103 NSFTFPSLFKACASHPWLQHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYL 162

Query: 182 IDQI 193
            DQI
Sbjct: 163 FDQI 166



 Score = 55.1 bits (131), Expect(3) = 3e-45
 Identities = 35/71 (49%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
 Frame = +1

Query: 196 EPNLAAWNSVLTACAXXXXXXXXXXXXXX----LEVLDLFFLMQKSLVKPNEVTLVALIT 363
           EP+LA WN++L A A                  LE L LF  MQ S +KPNEVTLVALI+
Sbjct: 168 EPDLATWNTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALIS 227

Query: 364 ARTELGALSLG 396
           A + LGALS G
Sbjct: 228 ACSNLGALSQG 238


>ref|NP_199192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75262420|sp|Q9FG85.1|PP415_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g43790 gi|10177948|dbj|BAB11307.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|332007627|gb|AED95010.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 460

 Score = 85.9 bits (211), Expect(4) = 2e-38
 Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
 Frame = +2

Query: 392 WA-MYIIRNKLSLNHFISTASITFNINFGCLKFAEEMFDHLPHRDTFCFNAMIRGLAIHG 568
           WA +Y+++N L+LN F+ T+ I      GCL FA ++FD +  RD  C+NAMIRGLA+HG
Sbjct: 237 WAHVYVLKNNLTLNQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRGLAVHG 296

Query: 569 NGQKALDLFEIMKQESFAPDEGRHYISSNVC 661
            GQ+ ++L++ +  +   PD     ++ + C
Sbjct: 297 FGQEGIELYKSLISQGLVPDSATFVVTISAC 327



 Score = 77.0 bits (188), Expect(4) = 2e-38
 Identities = 37/67 (55%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
 Frame = +2

Query: 2   NNYTYPSLFKAFGA-CQWLKHGQALHAHVLKFLQP-SYDNLVQASLLSFYSKCGRVGVAS 175
           N +TYPSLFKA G   QW +HG+ALHAHVLKFL+P ++D  VQA+L+ FY+ CG++  A 
Sbjct: 111 NEFTYPSLFKASGFDAQWHRHGRALHAHVLKFLEPVNHDRFVQAALVGFYANCGKLREAR 170

Query: 176 YFIDQIR 196
              ++IR
Sbjct: 171 SLFERIR 177



 Score = 42.4 bits (98), Expect(4) = 2e-38
 Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
 Frame = +1

Query: 193 KEPNLAAWNSVLTACAXXXXXXXXXXXXXXLEVLDLFFLMQKSLVKPNEVTLVALITART 372
           +EP+LA WN++L A A               EVL LF  MQ   V+PNE++LVALI +  
Sbjct: 177 REPDLATWNTLLAAYANSEEIDSDE------EVLLLFMRMQ---VRPNELSLVALIKSCA 227

Query: 373 ELGALSLG---HVY 405
            LG    G   HVY
Sbjct: 228 NLGEFVRGVWAHVY 241



 Score = 21.2 bits (43), Expect(4) = 2e-38
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 639 TILALMCACSHVGLVN 686
           T +  + ACSH GLV+
Sbjct: 319 TFVVTISACSHSGLVD 334


>ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355484374|gb|AES65577.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 740

 Score = 77.8 bits (190), Expect(4) = 2e-38
 Identities = 37/65 (56%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
 Frame = +2

Query: 2   NNYTYPSLFKAFGACQ-WLKHGQALHAHVLKFLQPSYDNLVQASLLSFYSKCGRVGVASY 178
           N++T+PSLFKA  + Q W  +G  LH HVLKFLQP +DN VQASLL+FY+K G++ V+ Y
Sbjct: 249 NSFTFPSLFKACCSNQSWFHYGPLLHTHVLKFLQPPFDNFVQASLLNFYAKYGKMCVSRY 308

Query: 179 FIDQI 193
             D+I
Sbjct: 309 IFDRI 313



 Score = 77.4 bits (189), Expect(4) = 2e-38
 Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
 Frame = +2

Query: 401 YIIRNKLSLNHFISTASITFNINFGCLKFAEEMFDHLPH--RDTFCFNAMIRGLAIHGNG 574
           +++RNK+ +N F+ TA +      GCL  A ++FD +P   RD+FC+ AMI G A+HG G
Sbjct: 391 FVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYG 450

Query: 575 QKALDLFEIMKQESFAPDEGRHYISSNVC 661
            +AL+L+  MK +   PD     ++   C
Sbjct: 451 NQALELYRKMKFKGLVPDSATFVVTMFAC 479



 Score = 46.6 bits (109), Expect(4) = 2e-38
 Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
 Frame = +1

Query: 196 EPNLAAWNSVLTACAXXXXXXXXXXXXXX----LEVLDLFFLMQKSLVKPNEVTLVALIT 363
           EP+LA WN +L A A                  LE L LF  MQ   ++PNEVT+VALI+
Sbjct: 315 EPDLATWNVILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALIS 374

Query: 364 ARTELGALSLG 396
           A + LGA+S G
Sbjct: 375 ACSNLGAVSQG 385



 Score = 24.3 bits (51), Expect(4) = 2e-38
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 639 TILALMCACSHVGLV 683
           T +  M ACSHVGLV
Sbjct: 471 TFVVTMFACSHVGLV 485


>ref|XP_002863633.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297309468|gb|EFH39892.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 460

 Score = 86.3 bits (212), Expect(4) = 7e-38
 Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
 Frame = +2

Query: 392 WA-MYIIRNKLSLNHFISTASITFNINFGCLKFAEEMFDHLPHRDTFCFNAMIRGLAIHG 568
           WA +Y+++  L+LN F+ T+ I F    GCL FA ++FD +  RD  CFNAMIRGLA+HG
Sbjct: 237 WAHVYLLKKNLTLNQFVGTSLIDFYSKCGCLSFARQVFDEMSERDISCFNAMIRGLAVHG 296

Query: 569 NGQKALDLFEIMKQESFAPDEGRHYISSNVC 661
            GQ+ ++L+  +  +   PD     ++ + C
Sbjct: 297 FGQEGIELYNSLISQGLVPDNATFVVTISAC 327



 Score = 74.7 bits (182), Expect(4) = 7e-38
 Identities = 35/67 (52%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
 Frame = +2

Query: 2   NNYTYPSLFKAFG-ACQWLKHGQALHAHVLKFLQP-SYDNLVQASLLSFYSKCGRVGVAS 175
           N +TYPSLFKA G   +W +HG+ALHAHVLKF++P ++D  VQA+L+ FY+ CG +  A 
Sbjct: 111 NEFTYPSLFKASGFETKWHRHGRALHAHVLKFIEPVNHDRFVQAALVGFYANCGELREAR 170

Query: 176 YFIDQIR 196
             +++IR
Sbjct: 171 SLLERIR 177



 Score = 42.0 bits (97), Expect(4) = 7e-38
 Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
 Frame = +1

Query: 193 KEPNLAAWNSVLTACAXXXXXXXXXXXXXXLEVLDLFFLMQKSLVKPNEVTLVALITART 372
           +EP+LA WN++L A A               EVL LF  MQ   V+PNE++LVALI +  
Sbjct: 177 REPDLATWNTLLAAYANSEETESDE------EVLKLFVRMQ---VRPNELSLVALIKSCA 227

Query: 373 ELGALSLG---HVY 405
            LG    G   HVY
Sbjct: 228 NLGEFWGGVWAHVY 241



 Score = 21.2 bits (43), Expect(4) = 7e-38
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 639 TILALMCACSHVGLVN 686
           T +  + ACSH GLV+
Sbjct: 319 TFVVTISACSHSGLVD 334


>ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score = 95.9 bits (237), Expect(3) = 5e-34
 Identities = 45/82 (54%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
 Frame = +2

Query: 389 AWA-MYIIRNKLSLNHFISTASITFNINFGCLKFAEEMFDHLPHRDTFCFNAMIRGLAIH 565
           AWA +Y++++ L LNHF+ TA I      GCL  A ++FD LPHRDT C+NAMI G AIH
Sbjct: 238 AWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIH 297

Query: 566 GNGQKALDLFEIMKQESFAPDE 631
           G G +ALDLF+ M  E  APD+
Sbjct: 298 GYGHQALDLFKKMTLEGLAPDD 319



 Score = 65.5 bits (158), Expect(3) = 5e-34
 Identities = 43/89 (48%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
 Frame = +1

Query: 148 KMWKSRCC*LFY*SDKEPNLAAWNSVLTACAXXXXXXXXXXXXXXLEVLDLFFLMQKSLV 327
           K  K   C   +    +P+LA+WNS+L+A                LEVL LF  MQKSL+
Sbjct: 156 KCGKVGACRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSLS-LEVLTLFIEMQKSLI 214

Query: 328 KPNEVTLVALITARTELGALSLG---HVY 405
           K NEVTLVALI+A  ELGALS G   HVY
Sbjct: 215 KANEVTLVALISACAELGALSQGAWAHVY 243



 Score = 29.6 bits (65), Expect(3) = 5e-34
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 636 VTILALMCACSHVGLV 683
           VT++  MC+CSHVGLV
Sbjct: 320 VTLVVTMCSCSHVGLV 335



 Score = 89.7 bits (221), Expect = 5e-16
 Identities = 38/64 (59%), Positives = 51/64 (79%)
 Frame = +2

Query: 2   NNYTYPSLFKAFGACQWLKHGQALHAHVLKFLQPSYDNLVQASLLSFYSKCGRVGVASYF 181
           N +T+PSLFKA G+  WL+HG+ALH HVLKFL+P+ D  VQA+LL++Y+KCG+VG   Y 
Sbjct: 107 NGFTFPSLFKACGSQPWLRHGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYL 166

Query: 182 IDQI 193
            +QI
Sbjct: 167 FNQI 170