BLASTX nr result

ID: Scutellaria24_contig00026939 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00026939
         (454 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN75728.1| hypothetical protein VITISV_031408 [Vitis vinifera]    99   5e-19
emb|CAN78509.1| hypothetical protein VITISV_031642 [Vitis vinifera]    98   6e-19
emb|CAN83839.1| hypothetical protein VITISV_023230 [Vitis vinifera]    90   2e-16
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]    82   6e-14
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    81   1e-13

>emb|CAN75728.1| hypothetical protein VITISV_031408 [Vitis vinifera]
          Length = 1099

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 49/96 (51%), Positives = 64/96 (66%), Gaps = 4/96 (4%)
 Frame = +3

Query: 3   CFPYLRPYNSNKFMQRSTKCVFLGYNPAHKGYKCLSSSGKIYIAATVEFNEHEFPYPHLF 182
           C+ YLRPYNS+KF  RSTKC+FLGY+P HKGY+CLS SG+IY+A ++ FNE++FPY  L 
Sbjct: 477 CYSYLRPYNSHKFSFRSTKCLFLGYSPXHKGYRCLSXSGQIYVAKSITFNENDFPYSTLL 536

Query: 183 SSQN----TGVGVTTLPQNVLPIWSETSKEYLSSIH 278
           +  N    + +   + P  VLP     S   LSS H
Sbjct: 537 TQPNIPHQSFIHKFSCPSYVLPYCPPVS---LSSTH 569


>emb|CAN78509.1| hypothetical protein VITISV_031642 [Vitis vinifera]
          Length = 722

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 41/65 (63%), Positives = 52/65 (80%)
 Frame = +3

Query: 3   CFPYLRPYNSNKFMQRSTKCVFLGYNPAHKGYKCLSSSGKIYIAATVEFNEHEFPYPHLF 182
           C+PYLR YNS+KF  +STKC+FLGY+PAH GY+C SSS +IY+A  V FNE++FPY  LF
Sbjct: 503 CYPYLRSYNSHKFSFKSTKCLFLGYSPAHNGYRCFSSSNRIYVAKLVTFNENDFPYSTLF 562

Query: 183 SSQNT 197
           +  NT
Sbjct: 563 TQPNT 567


>emb|CAN83839.1| hypothetical protein VITISV_023230 [Vitis vinifera]
          Length = 731

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 41/75 (54%), Positives = 51/75 (68%)
 Frame = +3

Query: 3   CFPYLRPYNSNKFMQRSTKCVFLGYNPAHKGYKCLSSSGKIYIAATVEFNEHEFPYPHLF 182
           CFP+LRPYNS+K   RS+KC+FLGY+  HKGY CL   GKIYI+  V FNEHEFPY  L 
Sbjct: 99  CFPHLRPYNSHKLQFRSSKCLFLGYSSTHKGYLCLHPFGKIYISRNVIFNEHEFPYSELL 158

Query: 183 SSQNTGVGVTTLPQN 227
             +       +LP++
Sbjct: 159 GLKYDVSHPISLPES 173


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 34/56 (60%), Positives = 43/56 (76%)
 Frame = +3

Query: 3   CFPYLRPYNSNKFMQRSTKCVFLGYNPAHKGYKCLSSSGKIYIAATVEFNEHEFPY 170
           CFP LRPYN++K   RS +C FLGY+  HKGYKC+SS+G++YI+  V FNE  FPY
Sbjct: 752 CFPNLRPYNTHKLQYRSEECTFLGYSLKHKGYKCMSSNGRVYISHDVIFNETSFPY 807


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
           gi|531389|gb|AAA57005.1| copia-like retrotransposon
           Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 39/72 (54%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
 Frame = +3

Query: 3   CFPYLRPYNSNKFMQRSTKCVFLGYNPAHKGYKCLS-SSGKIYIAATVEFNEHEFPYPHL 179
           C+P LRPYN +K   RST+CVFLGY+  HKG+KCL  S+G+IYI+  V F+EH FP+  L
Sbjct: 686 CWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKCLDISTGRIYISRDVVFDEHVFPFASL 745

Query: 180 FSSQNTGVGVTT 215
             ++N GV  T+
Sbjct: 746 --NKNAGVKYTS 755


Top