BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00026029
         (371 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...    67   2e-09
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...    55   6e-06

>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic;
           AltName: Full=NictaRpoT3-tom; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3B;
           Flags: Precursor gi|21425667|emb|CAC95021.2| chloroplast
           RNA polymerase [Nicotiana tabacum]
          Length = 977

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 47/125 (37%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
 Frame = -3

Query: 366 MASTAPFFPSSRAQFNQRPPAWKPQKKPK---FIPMSTPEIXXXXXXXXXXXXXXXQTLK 196
           MASTA + PS  +Q       W+ QK PK   F  +   E                +TLK
Sbjct: 1   MASTASYSPSPTSQ-------WRTQKLPKRFNFYVIHNQEFGKLSQSSSLSTSSFPKTLK 53

Query: 195 LPSLHNSTPLLXXXXXXXXXDNFMENTEKVSNLQVIPNGYPSNLMKKSSDRDFIQDPPWI 16
           LP +H   P+           +  EN E++ NLQ IPNG+   L K+S+ R FIQDPPW+
Sbjct: 54  LPVIH--MPINNIQSQTTVCVSTDENLEELVNLQKIPNGF---LNKESNKRVFIQDPPWV 108

Query: 15  SSLYM 1
           SSL+M
Sbjct: 109 SSLFM 113


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic;
           AltName: Full=NsRpoT-C; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3;
           Flags: Precursor gi|59800203|sp|P69243.1|RPO3A_TOBAC
           RecName: Full=DNA-directed RNA polymerase 3A,
           chloroplastic; AltName: Full=NictaRpoT3-syl; AltName:
           Full=T7 bacteriophage-type single subunit RNA polymerase
           3A; Flags: Precursor gi|21425641|emb|CAC82576.3|
           phage-type RNA polymerase [Nicotiana sylvestris]
           gi|21425679|emb|CAC95027.2| plastid RNA polymerase
           [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 977

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 45/126 (35%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
 Frame = -3

Query: 366 MASTAPFFPSSRAQFNQRPPAWKPQKKPK---FIPMSTPEIXXXXXXXXXXXXXXXQTLK 196
           MASTA + PS  +Q       W+ QK PK   F  +   E                +TLK
Sbjct: 1   MASTASYSPSPTSQ-------WRTQKLPKRFNFYVIHNQEFGKLSQSSSLPTSSFPKTLK 53

Query: 195 LPSLHNSTPLLXXXXXXXXXD-NFMENTEKVSNLQVIPNGYPSNLMKKSSDRDFIQDPPW 19
           LP +    P+            +  EN E++ NLQ I NG    L K+S+ R FIQDPPW
Sbjct: 54  LPVIQ--MPINNNIQSQTTVCVSTDENLEELVNLQKIANGV---LTKESNKRVFIQDPPW 108

Query: 18  ISSLYM 1
           +SSL+M
Sbjct: 109 VSSLFM 114