BLASTX nr result

ID: Scutellaria24_contig00025261 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00025261
         (243 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002527838.1| helicase, putative [Ricinus communis] gi|223...    64   1e-08
emb|CBI24348.3| unnamed protein product [Vitis vinifera]               63   3e-08
ref|XP_002273102.1| PREDICTED: superkiller viralicidic activity ...    63   3e-08
ref|XP_002328732.1| predicted protein [Populus trichocarpa] gi|2...    59   3e-07
ref|NP_176185.1| RNA helicase [Arabidopsis thaliana] gi|5080810|...    59   5e-07

>ref|XP_002527838.1| helicase, putative [Ricinus communis] gi|223532762|gb|EEF34541.1|
           helicase, putative [Ricinus communis]
          Length = 991

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 36/69 (52%), Positives = 43/69 (62%), Gaps = 6/69 (8%)
 Frame = +1

Query: 43  MGSVKRKQLEEAKEDYEAPPLKQQRENELMM-DEPVACLHDVSYPEGYV-----SRGIRQ 204
           M  +KRK +E    +   PP KQQREN +   DEPVACLHDVSYPE YV        +++
Sbjct: 1   MALLKRKSVEYPSGE-SLPPQKQQRENGMATADEPVACLHDVSYPENYVPPPRLDSSVQK 59

Query: 205 SSKPAKEFP 231
             KPAKEFP
Sbjct: 60  DLKPAKEFP 68


>emb|CBI24348.3| unnamed protein product [Vitis vinifera]
          Length = 968

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 36/71 (50%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
 Frame = +1

Query: 43  MGSVKRKQLEEAKEDYEAPPLKQQRENELMM---DEPVACLHDVSYPEGYVSRGI----- 198
           MGS+KRK  E+   +    P KQQRE+   +   +E VAC+HDVSYPEGY  R       
Sbjct: 1   MGSLKRKSTEDPSVE-RLSPQKQQREDSASLNTLEESVACIHDVSYPEGYEPRSSFSSSP 59

Query: 199 RQSSKPAKEFP 231
           R+ SKPAKEFP
Sbjct: 60  RKDSKPAKEFP 70


>ref|XP_002273102.1| PREDICTED: superkiller viralicidic activity 2-like 2 [Vitis
           vinifera]
          Length = 994

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 36/71 (50%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
 Frame = +1

Query: 43  MGSVKRKQLEEAKEDYEAPPLKQQRENELMM---DEPVACLHDVSYPEGYVSRGI----- 198
           MGS+KRK  E+   +    P KQQRE+   +   +E VAC+HDVSYPEGY  R       
Sbjct: 1   MGSLKRKSTEDPSVE-RLSPQKQQREDSASLNTLEESVACIHDVSYPEGYEPRSSFSSSP 59

Query: 199 RQSSKPAKEFP 231
           R+ SKPAKEFP
Sbjct: 60  RKDSKPAKEFP 70


>ref|XP_002328732.1| predicted protein [Populus trichocarpa] gi|222839030|gb|EEE77381.1|
           predicted protein [Populus trichocarpa]
          Length = 1012

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 38/80 (47%), Positives = 44/80 (55%), Gaps = 17/80 (21%)
 Frame = +1

Query: 43  MGSVKRKQLEEAKEDYEA-PPLKQQRENE----------LMMDEPVACLHDVSYPEGYVS 189
           M SVKRK +E  +ED    PP KQ RE+           +   E VACLHDVSYPE YV 
Sbjct: 1   MASVKRKSIESQQEDRPLLPPQKQLREDHSNNNSSSSKIIGHGEAVACLHDVSYPENYVR 60

Query: 190 RG------IRQSSKPAKEFP 231
                   I++ SKPAKEFP
Sbjct: 61  PSSSSVTQIQKDSKPAKEFP 80


>ref|NP_176185.1| RNA helicase [Arabidopsis thaliana]
           gi|5080810|gb|AAD39319.1|AC007258_8 Very similar to
           helicases [Arabidopsis thaliana]
           gi|51971869|dbj|BAD44599.1| hypothetical protein
           [Arabidopsis thaliana] gi|332195495|gb|AEE33616.1| RNA
           helicase [Arabidopsis thaliana]
          Length = 988

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
 Frame = +1

Query: 43  MGSVKRKQLEEAKEDYEAPPLKQQRENE---LMMDEPVACLHDVSYPEGYVSRGIRQSSK 213
           MGSVKRK +EE+ +   APP K QRE++   ++ +E V C+HDVS+PE YV       +K
Sbjct: 1   MGSVKRKSVEESSDS--APPQKVQREDDSTQIINEELVGCVHDVSFPENYVPLAPSVHNK 58

Query: 214 -PAKEFP 231
            PAK+FP
Sbjct: 59  PPAKDFP 65


Top