BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00021099
         (784 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrh...   424   e-117
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   400   e-109
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   395   e-108
gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...   390   e-106
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   382   e-104

>gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrhinum majus]
          Length = 821

 Score =  424 bits (1091), Expect = e-117
 Identities = 205/259 (79%), Positives = 226/259 (87%)
 Frame = +3

Query: 3    HAEVRIFADAGRILRPLLVVQNLKKIKELKGDFMFQSLLDNXXXXXXXXXXXXDCQTAWG 182
            H EVRIFADAGRILRPLL+VQ LKKIKELKG+F FQSLLDN            DC+TAWG
Sbjct: 257  HREVRIFADAGRILRPLLLVQKLKKIKELKGEFSFQSLLDNGIVEFIGAEEEEDCRTAWG 316

Query: 183  IKYLFTAELENPPVKYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYS 362
            IKYLF+A+ E P VKYTHCELD SFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIG+S
Sbjct: 317  IKYLFSADKEKPLVKYTHCELDCSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFS 376

Query: 363  TTNSNIRVDTNSHQLYYPQRPLFRTMLADCLGKSTYSHHHKGMIPRPEFFNSQCAIVAVN 542
            TTN +IRVDTNSH LYYPQRP+F TML+D LGKS YS HHKGM+P PEFFN QCAIVAVN
Sbjct: 377  TTNPSIRVDTNSHNLYYPQRPIFGTMLSDSLGKSKYSSHHKGMLPHPEFFNGQCAIVAVN 436

Query: 543  VHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAELENAEAGGKKVKTDELVSFGKMPSKI 722
            VHLGYNQEDS+VMNR+S+ERGMFR+EHVRSYKAE++N++A GKK+K D+LV FGK  SKI
Sbjct: 437  VHLGYNQEDSIVMNRASMERGMFRTEHVRSYKAEVDNSDAPGKKLKPDDLVDFGKTESKI 496

Query: 723  GRVDSLDDDGFPYIGANHQ 779
            GRVDSLDDDGFP+IGAN Q
Sbjct: 497  GRVDSLDDDGFPFIGANLQ 515


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  400 bits (1027), Expect = e-109
 Identities = 196/258 (75%), Positives = 218/258 (84%), Gaps = 1/258 (0%)
 Frame = +3

Query: 9    EVRIFADAGRILRPLLVVQNLKKIKELKG-DFMFQSLLDNXXXXXXXXXXXXDCQTAWGI 185
            EVRIF+D GRILRPLLVV NLKKIK LKG D+ FQSLLDN            DC+TAWG+
Sbjct: 649  EVRIFSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGV 708

Query: 186  KYLFTAELENPPVKYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYST 365
            +Y+  A+ ENPP KYTHCELD SFLLGLSCG+IPFANHDHARRVLYQSEKHSQQAIG+ST
Sbjct: 709  EYILKADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFST 768

Query: 366  TNSNIRVDTNSHQLYYPQRPLFRTMLADCLGKSTYSHHHKGMIPRPEFFNSQCAIVAVNV 545
             N N RVDTN+HQLYYPQRPLFRTMLAD LGK   + + KGM+PRPE+FN QCAIVAVNV
Sbjct: 769  VNPNNRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNV 828

Query: 546  HLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAELENAEAGGKKVKTDELVSFGKMPSKIG 725
            HLGYNQEDSLVMNR+SLERGMFRSEHVRSYKAE++N EA  KK+K ++ V+FGK  SKIG
Sbjct: 829  HLGYNQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIG 888

Query: 726  RVDSLDDDGFPYIGANHQ 779
            RVDSLDDDGFP+IGAN Q
Sbjct: 889  RVDSLDDDGFPFIGANLQ 906


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score =  395 bits (1016), Expect = e-108
 Identities = 195/258 (75%), Positives = 218/258 (84%), Gaps = 1/258 (0%)
 Frame = +3

Query: 9    EVRIFADAGRILRPLLVVQNLKKIKELKGD-FMFQSLLDNXXXXXXXXXXXXDCQTAWGI 185
            EVRIF+DAGRILRPLLVV+NLKK+K  KGD F FQSLLD             DC TAWGI
Sbjct: 636  EVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGI 695

Query: 186  KYLFTAELENPPVKYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYST 365
            KYL     ++PPVKYTHCELD SFLLGLSCG+IP+ANHDHARRVLYQSEKHSQQAIG+ST
Sbjct: 696  KYLLKGH-DDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFST 754

Query: 366  TNSNIRVDTNSHQLYYPQRPLFRTMLADCLGKSTYSHHHKGMIPRPEFFNSQCAIVAVNV 545
            TN NIRVDT SHQLYYPQRPLFRTM++DCLGK  YS  HKG++PRPE+FN Q AIVAVNV
Sbjct: 755  TNPNIRVDTLSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNV 814

Query: 546  HLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAELENAEAGGKKVKTDELVSFGKMPSKIG 725
            HLGYNQEDSLVMNR+SLERGMFRSEH+RSYK+E++N E+  KK K+++ V FGKM SKIG
Sbjct: 815  HLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIG 874

Query: 726  RVDSLDDDGFPYIGANHQ 779
            RVDSLDDDGFP+IGAN Q
Sbjct: 875  RVDSLDDDGFPFIGANLQ 892


>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score =  390 bits (1003), Expect = e-106
 Identities = 192/262 (73%), Positives = 215/262 (82%), Gaps = 5/262 (1%)
 Frame = +3

Query: 9    EVRIFADAGRILRPLLVVQNLKKIKELK-----GDFMFQSLLDNXXXXXXXXXXXXDCQT 173
            EVRIF+DAGRI+RPLLVV NLK IK LK     GD+ FQ+LLD             DC+T
Sbjct: 682  EVRIFSDAGRIMRPLLVVSNLKNIKALKDGMKGGDYGFQTLLDKGIIELIGPEEEEDCRT 741

Query: 174  AWGIKYLFTAELENPPVKYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAI 353
            AWG++YL  A+ ENPPV YTHCELD SFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAI
Sbjct: 742  AWGVEYLLKADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAI 801

Query: 354  GYSTTNSNIRVDTNSHQLYYPQRPLFRTMLADCLGKSTYSHHHKGMIPRPEFFNSQCAIV 533
            G+ST N N RVDTN+HQLYYPQRPLF TML+D LGK   + H KGM+ RPE++N QCAIV
Sbjct: 802  GFSTVNPNARVDTNTHQLYYPQRPLFGTMLSDSLGKPKCARHQKGMLSRPEYYNGQCAIV 861

Query: 534  AVNVHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAELENAEAGGKKVKTDELVSFGKMP 713
            AVNVHLGYNQEDS+VMNR+SLERGMFRSEHVRSYKAE++N EA GKK K ++ V+FGK  
Sbjct: 862  AVNVHLGYNQEDSVVMNRASLERGMFRSEHVRSYKAEVDNKEAMGKKSKVEDSVNFGKTQ 921

Query: 714  SKIGRVDSLDDDGFPYIGANHQ 779
            SKIGRVDSLDDDGFP+IGAN Q
Sbjct: 922  SKIGRVDSLDDDGFPFIGANLQ 943


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score =  382 bits (982), Expect = e-104
 Identities = 187/260 (71%), Positives = 213/260 (81%), Gaps = 1/260 (0%)
 Frame = +3

Query: 3    HAEVRIFADAGRILRPLLVVQNLKKIKELKG-DFMFQSLLDNXXXXXXXXXXXXDCQTAW 179
            H EVR+F+DAGRILRPLLVV+NL KIK  KG D+ FQSLLD             DC+TAW
Sbjct: 454  HREVRVFSDAGRILRPLLVVENLGKIKASKGGDYSFQSLLDKGVIEFIGTEEEEDCRTAW 513

Query: 180  GIKYLFTAELENPPVKYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGY 359
            GI YLF        VKYTHCELD SFLLGLS  +IPFANHDHARRVLYQSEKHSQQA+G+
Sbjct: 514  GINYLFMENEAKATVKYTHCELDMSFLLGLSAAIIPFANHDHARRVLYQSEKHSQQAMGF 573

Query: 360  STTNSNIRVDTNSHQLYYPQRPLFRTMLADCLGKSTYSHHHKGMIPRPEFFNSQCAIVAV 539
            +TTN NIRVDTN+HQLYYPQRPLFRTM++DCLGK  Y   H G++PR E+FN QCAIVAV
Sbjct: 574  NTTNPNIRVDTNTHQLYYPQRPLFRTMVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAV 633

Query: 540  NVHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAELENAEAGGKKVKTDELVSFGKMPSK 719
            NVHLGYNQEDSLVMNR+SLERGMFRSEH+RSYKA+++N E+ GKK K ++ V+FGK+ SK
Sbjct: 634  NVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKESVGKKPKFEDSVNFGKVQSK 693

Query: 720  IGRVDSLDDDGFPYIGANHQ 779
            IGRVDSLDDDGFP+IGAN Q
Sbjct: 694  IGRVDSLDDDGFPFIGANLQ 713