BLASTX nr result

ID: Scutellaria24_contig00019048 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00019048
         (328 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN77350.1| hypothetical protein VITISV_007542 [Vitis vinifera]    69   4e-10
ref|XP_003555216.1| PREDICTED: pre-mRNA-splicing factor syf2-lik...    69   5e-10
ref|NP_565396.1| pre-mRNA-splicing factor SYF2 [Arabidopsis thal...    68   7e-10
ref|NP_001241898.1| uncharacterized protein LOC100787714 [Glycin...    68   9e-10
ref|XP_004147047.1| PREDICTED: pre-mRNA-splicing factor syf2-lik...    67   2e-09

>emb|CAN77350.1| hypothetical protein VITISV_007542 [Vitis vinifera]
          Length = 295

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 30/50 (60%), Positives = 39/50 (78%)
 Frame = +1

Query: 145 ERKVHPDCRNASNPYHECSEYCFQIIAEAKKRMNRSDIGLQANDDDRQPN 294
           ER+VHPDC NASNPYHEC EYCF+ IAEAK +M++ + G+   D D+ P+
Sbjct: 4   ERRVHPDCINASNPYHECVEYCFRKIAEAKAQMDKKESGVP--DQDKNPH 51


>ref|XP_003555216.1| PREDICTED: pre-mRNA-splicing factor syf2-like [Glycine max]
          Length = 411

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 36/76 (47%), Positives = 48/76 (63%)
 Frame = +1

Query: 28  FSPSSPIRRSLKLNALNSIA*FTGDVLSIKKSMERSKDEERKVHPDCRNASNPYHECSEY 207
           FS  + I  S   + ++S++      L  K S+    DE R VHPDCRNASNPYHECS+Y
Sbjct: 70  FSNPNSIPNSASCSEIDSVS------LQGKISLHDMSDE-RAVHPDCRNASNPYHECSDY 122

Query: 208 CFQIIAEAKKRMNRSD 255
           CF++IAEAK R  + +
Sbjct: 123 CFRVIAEAKIRSQQQE 138


>ref|NP_565396.1| pre-mRNA-splicing factor SYF2 [Arabidopsis thaliana]
           gi|20197279|gb|AAC64217.2| Expressed protein
           [Arabidopsis thaliana] gi|20197459|gb|AAM15083.1|
           Expressed protein [Arabidopsis thaliana]
           gi|20466270|gb|AAM20452.1| unknown protein [Arabidopsis
           thaliana] gi|22136328|gb|AAM91242.1| unknown protein
           [Arabidopsis thaliana] gi|330251450|gb|AEC06544.1|
           pre-mRNA-splicing factor SYF2 [Arabidopsis thaliana]
          Length = 298

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 30/50 (60%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
 Frame = +1

Query: 145 ERKVHPDCRNASNPYHECSEYCFQIIAEAKKRMNRSDIGL-QANDDDRQP 291
           ER+VHPDC NASNPYHEC EYCF+ IAEAK R  + + GL + ++  R+P
Sbjct: 4   ERRVHPDCINASNPYHECVEYCFKKIAEAKARFEKQNTGLAKVHEQTREP 53


>ref|NP_001241898.1| uncharacterized protein LOC100787714 [Glycine max]
           gi|255636854|gb|ACU18760.1| unknown [Glycine max]
          Length = 314

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 27/38 (71%), Positives = 33/38 (86%)
 Frame = +1

Query: 142 EERKVHPDCRNASNPYHECSEYCFQIIAEAKKRMNRSD 255
           +ER VHPDCRNASNPYHECS+YCF++IAEAK R  + +
Sbjct: 3   DERAVHPDCRNASNPYHECSDYCFRVIAEAKIRSQQQE 40


>ref|XP_004147047.1| PREDICTED: pre-mRNA-splicing factor syf2-like [Cucumis sativus]
           gi|449489629|ref|XP_004158369.1| PREDICTED:
           pre-mRNA-splicing factor syf2-like [Cucumis sativus]
          Length = 310

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 26/38 (68%), Positives = 33/38 (86%)
 Frame = +1

Query: 142 EERKVHPDCRNASNPYHECSEYCFQIIAEAKKRMNRSD 255
           +E +VHPDCRNASNPYHECSEYCF++IAE K R  +++
Sbjct: 3   DEGRVHPDCRNASNPYHECSEYCFKVIAELKARSQKNE 40


Top