BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00018900
         (467 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   116   2e-24
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   115   5e-24
ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]...   112   2e-23
ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp....   111   5e-23
ref|NP_176299.1| plus-3 domain-containing protein [Arabidopsis t...   111   7e-23

>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
           gi|223541691|gb|EEF43239.1| RNA polymerase-associated
           protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  116 bits (290), Expect = 2e-24
 Identities = 71/177 (40%), Positives = 95/177 (53%), Gaps = 22/177 (12%)
 Frame = +3

Query: 3   KRKGQDRKGSPPKTHTRSMRSKA---ERAGALDELV-----------------KXXXXXX 122
           +R  + RK +PP   +R +R+ A   +RA A D+ +                 K      
Sbjct: 153 ERTTRSRKETPPLPSSRGVRTSARSADRAAAKDDALNELKARRLKQQDPEAHRKLRDASR 212

Query: 123 XXXXXXXYSPVKRRSFTAATLXXXXXXXXXXXXXXXXXXXXXXXXXXEKLASE--SKVPT 296
                  +SP+KR+ FT+A+L                               E  S+ PT
Sbjct: 213 RGSGSRGFSPIKRKRFTSASLSSSSSESESRSHSEDEGSTGDGGMADSDDDGEPGSQGPT 272

Query: 297 FEDIKEITIRRSKLAKWFMEPFFDDMIVGCFVRVGIGKSRSGSIYRLCVVRNVDATD 467
           F+DI+EITIRRSKLAKWFMEP+F+++IVGCFVRVGIG+S+SG IYRLC+VRNVDA D
Sbjct: 273 FDDIREITIRRSKLAKWFMEPWFEELIVGCFVRVGIGRSKSGPIYRLCLVRNVDAAD 329


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
           sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
           polymerase-associated protein RTF1 homolog [Cucumis
           sativus]
          Length = 660

 Score =  115 bits (287), Expect = 5e-24
 Identities = 72/177 (40%), Positives = 89/177 (50%), Gaps = 23/177 (12%)
 Frame = +3

Query: 6   RKGQDRKGSPP--KTHTRSMRSKAERAGALDELV-----------------KXXXXXXXX 128
           +    RK +PP   +  RS    A+RA A D+ +                 K        
Sbjct: 154 KSAPSRKETPPLPSSRIRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGN 213

Query: 129 XXXXXYSPVKRRSFTAATLXXXXXXXXXXXXXXXXXXXXXXXXXX----EKLASESKVPT 296
                +SP KR+ FTA +L                              E+    S  PT
Sbjct: 214 ANSRRFSPTKRKPFTAPSLSSSSQSESESRFQSDDEGSTGDGGMIDSDDERSIPGSDGPT 273

Query: 297 FEDIKEITIRRSKLAKWFMEPFFDDMIVGCFVRVGIGKSRSGSIYRLCVVRNVDATD 467
           FEDIKE+TIRRSKLAKW MEPFF+++IVGCFVRVGIG+SRSG IYRLC+VRNVDAT+
Sbjct: 274 FEDIKEVTIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATE 330


>ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]
           gi|222848649|gb|EEE86196.1| PAF1 complex component
           [Populus trichocarpa]
          Length = 662

 Score =  112 bits (281), Expect = 2e-23
 Identities = 68/173 (39%), Positives = 93/173 (53%), Gaps = 22/173 (12%)
 Frame = +3

Query: 15  QDRKGSPPKTHTRSMRSKA---ERAGALDELV-----------------KXXXXXXXXXX 134
           + RK +PP   +R +RS A   +RA A D+ +                 K          
Sbjct: 158 RSRKETPPLPSSRGVRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSAG 217

Query: 135 XXXYSPVKRRSFTAATLXXXXXXXXXXXXXXXXXXXXXXXXXX--EKLASESKVPTFEDI 308
              +S VK+ +FT+A+L                            E +   SK PT+EDI
Sbjct: 218 SRGFSQVKKNNFTSASLSSSSSESGSRSHSEDEGSTGDGGMADSDEDVEPGSKGPTYEDI 277

Query: 309 KEITIRRSKLAKWFMEPFFDDMIVGCFVRVGIGKSRSGSIYRLCVVRNVDATD 467
           KEITIRR+KLAKWFMEP+F+++I+GCFVRVGIG+S+SG +YRLC+VRNVDA +
Sbjct: 278 KEITIRRTKLAKWFMEPWFEELIIGCFVRVGIGRSKSGPVYRLCMVRNVDAAE 330


>ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp. lyrata]
           gi|297333952|gb|EFH64370.1| At1g61040/T7P1_17
           [Arabidopsis lyrata subsp. lyrata]
          Length = 643

 Score =  111 bits (278), Expect = 5e-23
 Identities = 51/62 (82%), Positives = 58/62 (93%)
 Frame = +3

Query: 282 SKVPTFEDIKEITIRRSKLAKWFMEPFFDDMIVGCFVRVGIGKSRSGSIYRLCVVRNVDA 461
           S VPTFED+KEITIRRSKLAKW MEPFF+++IVGCFVRVGIG+S+SG IYRLC V+NVDA
Sbjct: 259 SDVPTFEDVKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKSGPIYRLCWVKNVDA 318

Query: 462 TD 467
           TD
Sbjct: 319 TD 320


>ref|NP_176299.1| plus-3 domain-containing protein [Arabidopsis thaliana]
           gi|12323334|gb|AAG51642.1|AC018908_8 unknown protein;
           78902-80833 [Arabidopsis thaliana]
           gi|332195649|gb|AEE33770.1| plus-3 domain-containing
           protein [Arabidopsis thaliana]
          Length = 643

 Score =  111 bits (277), Expect = 7e-23
 Identities = 50/62 (80%), Positives = 58/62 (93%)
 Frame = +3

Query: 282 SKVPTFEDIKEITIRRSKLAKWFMEPFFDDMIVGCFVRVGIGKSRSGSIYRLCVVRNVDA 461
           S VPTFED+KE+TIRRSKLAKW MEPFF+++IVGCFVRVGIG+S+SG IYRLC V+NVDA
Sbjct: 259 SDVPTFEDVKEVTIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKSGPIYRLCWVKNVDA 318

Query: 462 TD 467
           TD
Sbjct: 319 TD 320