BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00018827
         (1354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum ma...   373   e-101
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   331   2e-88
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   320   4e-85
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              320   4e-85
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   306   6e-81

>gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus]
          Length = 1112

 Score =  373 bits (958), Expect = e-101
 Identities = 179/303 (59%), Positives = 231/303 (76%), Gaps = 4/303 (1%)
 Frame = +1

Query: 4    MSEHCERTKFWNILIDKCLRVKDIIDWERSHPDELLDYSEAYGIDVAWQYFVNNLHCAIS 183
            MSE+CER +FWNIL++K LR++ +IDW+RSHPD++ DY EA+GID AW  FVN+L+ AIS
Sbjct: 800  MSENCERARFWNILVEKSLRIRSLIDWDRSHPDDVHDYGEAFGIDTAWMCFVNSLNSAIS 859

Query: 184  DTGKSILPEHLVVTANCLSLTGEFMPLNARGLALQRKETNVCSPFSQACFLNPSDCFVKA 363
            +TGK+ILPEHL+ TANCLS+TGEF+ LNA+GLA QRKE  + SPF QACF NPSDCF+KA
Sbjct: 860  ETGKTILPEHLIATANCLSMTGEFVSLNAKGLAQQRKEATINSPFVQACFSNPSDCFIKA 919

Query: 364  AKLGQTDGLQGSLEALSWGQTPSIGSGCRFDILYNGKGHEPAGPADVYSLLSSHVGHAKS 543
            AK+GQ D LQGS+++L+WGQTP IG+G +FDI+Y+GKGHEP+ P DVYSLL+S VG AK 
Sbjct: 920  AKMGQMDNLQGSVDSLAWGQTPPIGTGGQFDIIYSGKGHEPSKPTDVYSLLNSQVGFAKP 979

Query: 544  NPAAE---QVFGKSITSLHFKTKGQKVLLKRMISEHMSVIGIKQISQKLKRILKEYPINR 714
            +   +   Q    +  S + KT G+K  L  M S   +   I+++S  LKR+L EY  + 
Sbjct: 980  SEKIKLPVQFTSGNDQSQNLKTNGRKRFLAGMKSLRSAEDEIREVSLALKRMLHEYASDC 1039

Query: 715  QLSGADKSAAETALKFHPRWNEKIGTGLLEIKVGRHPEHNEN-CFFLIRTDGTEEDFSYH 891
            QL G DK+ A  AL++HPRW EK G G +EIKVGRHP+H E+ CFF+++TDGTEED SY 
Sbjct: 1040 QLRGEDKTLALRALQYHPRWEEKTGAGTVEIKVGRHPDHKESRCFFVVKTDGTEEDISYR 1099

Query: 892  KCI 900
            K I
Sbjct: 1100 KSI 1102


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  331 bits (849), Expect = 2e-88
 Identities = 171/331 (51%), Positives = 227/331 (68%), Gaps = 16/331 (4%)
 Frame = +1

Query: 4    MSEHCERTKFWNILIDKCLRVKDIIDWERSHPDELLDYSEAYGIDVAWQYFVNNLHCAIS 183
            MSE C+R KFWN L+D CL+++D+IDWERS+PD++ D + AYGIDVAW+YF+  LH A+S
Sbjct: 804  MSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVS 863

Query: 184  DTGKSILPEHLVVTANCLSLTGEFMPLNARGLALQRKETNVCSPFSQACFLNPSDCFVKA 363
            +TGK ILPEHLV+ A+ L+ TGEF+PL+A+GL LQRK   V SPF QACF NP D FV+A
Sbjct: 864  ETGKKILPEHLVLAADSLTTTGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRA 923

Query: 364  AKLGQTDGLQGSLEALSWGQTPSIGSGCRFDILYNGKGHEPAGPADVYSLLSSHVGHAKS 543
            AK+G +D LQGSLE+L+WG+TPSIG+G  FDI+Y+GKG+E A   +VY+LL + V     
Sbjct: 924  AKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQINVYTLLRNLV--TVD 981

Query: 544  NPAAEQVFGKS--------------ITSLHFKTKGQKVLLKRMISEHMSVIGIKQISQKL 681
             P  +   GK               +  L  K+   ++   ++ S + S   IK++SQ L
Sbjct: 982  TPNVKVTLGKDGGMDGMSLVRRLDRLDDLDKKSCKSELSFTKLRS-YFSFNDIKKLSQSL 1040

Query: 682  KRILKEYPINRQLSGADKSAAETALKFHPRWNEKIGTGL-LEIKVGRHPE-HNENCFFLI 855
            K++L +Y I R+L+ ADK  A  AL+FHPR NEKIG G   EIK+G H E     CF ++
Sbjct: 1041 KQMLSKYDIGRELNEADKCLAMMALQFHPRRNEKIGKGAPKEIKIGYHQEFEGSRCFMVV 1100

Query: 856  RTDGTEEDFSYHKCINHALEIIAPEMGKTYR 948
            R+D T EDFSY KC+ HALE+IAP+  KT R
Sbjct: 1101 RSDDTVEDFSYRKCMQHALELIAPQKAKTSR 1131


>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  320 bits (821), Expect = 4e-85
 Identities = 159/332 (47%), Positives = 216/332 (65%), Gaps = 15/332 (4%)
 Frame = +1

Query: 4    MSEHCERTKFWNILIDKCLRVKDIIDWERSHPDELLDYSEAYGIDVAWQYFVNNLHCAIS 183
            +S  C +  FW +L+D CL++ D+IDWERSHPD + D    YGID  W+YF+N+L  AIS
Sbjct: 1153 VSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAIS 1212

Query: 184  DTGKSILPEHLVVTANCLSLTGEFMPLNARGLALQRKETNVCSPFSQACFLNPSDCFVKA 363
            D GK++LPEHL++ A+CLS TGEF+ LNA+G+A Q++ T++ SPF Q CF +P  CF+KA
Sbjct: 1213 DIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKA 1272

Query: 364  AKLGQTDGLQGSLEALSWGQTPSIGSGCRFDILYNGKGHEPAGPADVYSLLSSHVGHAKS 543
             K    D L GSL+AL+WG+ PS+GSG  FDILY+ KGHE A P D+Y LL S     + 
Sbjct: 1273 GKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQ 1332

Query: 544  N--------------PAAEQVFGKSITSLHFKTKGQKVLLKRMISEHMSVIGIKQISQKL 681
            N                  Q+   +  S     K  + + K ++   +S+  I+++S++L
Sbjct: 1333 NLKVKVPITCYQTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRL 1392

Query: 682  KRILKEYPINRQLSGADKSAAETALKFHPRWNEKIGTGLLEIKVGRHPE-HNENCFFLIR 858
            K IL++YPIN QLS  DK+    AL FHPR +EKIG G   IKV  H + HN  CF L+R
Sbjct: 1393 KFILQKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVR 1452

Query: 859  TDGTEEDFSYHKCINHALEIIAPEMGKTYRSK 954
            TDGTEEDFSYHKC++ ALEII P   ++Y+S+
Sbjct: 1453 TDGTEEDFSYHKCVHGALEIIDPRRARSYQSR 1484


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  320 bits (821), Expect = 4e-85
 Identities = 159/332 (47%), Positives = 216/332 (65%), Gaps = 15/332 (4%)
 Frame = +1

Query: 4    MSEHCERTKFWNILIDKCLRVKDIIDWERSHPDELLDYSEAYGIDVAWQYFVNNLHCAIS 183
            +S  C +  FW +L+D CL++ D+IDWERSHPD + D    YGID  W+YF+N+L  AIS
Sbjct: 1011 VSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAIS 1070

Query: 184  DTGKSILPEHLVVTANCLSLTGEFMPLNARGLALQRKETNVCSPFSQACFLNPSDCFVKA 363
            D GK++LPEHL++ A+CLS TGEF+ LNA+G+A Q++ T++ SPF Q CF +P  CF+KA
Sbjct: 1071 DIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKA 1130

Query: 364  AKLGQTDGLQGSLEALSWGQTPSIGSGCRFDILYNGKGHEPAGPADVYSLLSSHVGHAKS 543
             K    D L GSL+AL+WG+ PS+GSG  FDILY+ KGHE A P D+Y LL S     + 
Sbjct: 1131 GKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQ 1190

Query: 544  N--------------PAAEQVFGKSITSLHFKTKGQKVLLKRMISEHMSVIGIKQISQKL 681
            N                  Q+   +  S     K  + + K ++   +S+  I+++S++L
Sbjct: 1191 NLKVKVPITCYQTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRL 1250

Query: 682  KRILKEYPINRQLSGADKSAAETALKFHPRWNEKIGTGLLEIKVGRHPE-HNENCFFLIR 858
            K IL++YPIN QLS  DK+    AL FHPR +EKIG G   IKV  H + HN  CF L+R
Sbjct: 1251 KFILQKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVR 1310

Query: 859  TDGTEEDFSYHKCINHALEIIAPEMGKTYRSK 954
            TDGTEEDFSYHKC++ ALEII P   ++Y+S+
Sbjct: 1311 TDGTEEDFSYHKCVHGALEIIDPRRARSYQSR 1342


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 1517

 Score =  306 bits (785), Expect = 6e-81
 Identities = 156/332 (46%), Positives = 221/332 (66%), Gaps = 15/332 (4%)
 Frame = +1

Query: 4    MSEHCERTKFWNILIDKCLRVKDIIDWERSHPDELLDYSEAYGIDVAWQYFVNNLHCAIS 183
            MS   ++T+ WN L+D CL + D+IDW RSHPD + +   AYGID  W++F+NNL  A+S
Sbjct: 1166 MSRGSDKTRLWNQLMDDCLSIMDLIDWARSHPDNIHECCLAYGIDAGWKFFLNNLQSAMS 1225

Query: 184  DTGKSILPEHLVVTANCLSLTGEFMPLNARGLALQRKETNVCSPFSQACFLNPSDCFVKA 363
            D GK++LPEHL++ ANCLS+TGEF+ LNA+GL  QR+  +V +PF QACF NP DCF++A
Sbjct: 1226 DVGKTVLPEHLLLVANCLSVTGEFVGLNAKGLKRQREHASVSTPFVQACFSNPGDCFIRA 1285

Query: 364  AKLGQTDGLQGSLEALSWGQTPSIGSGCRFDILYNGKGHEPAGPADVYSLLSSHVGHAKS 543
            AK G  D LQGS++AL+WG+ P+IG+G +FDI+Y+GKG E + P DVY+LL S +   + 
Sbjct: 1286 AKAGVVDDLQGSIDALAWGKVPAIGTG-QFDIVYSGKGLEFSKPVDVYNLLGSQMISTEQ 1344

Query: 544  NP----AAEQVFGKSITSLHF-------KTKGQKV---LLKRMISEHMSVIGIKQISQKL 681
            N        Q++        F         KG KV   + +  +   ++   I+++S  +
Sbjct: 1345 NTEFGVLDAQIYKSDKCGAQFLHKFGGCGPKGFKVKEGIPRSFLRRLLTYDDIQRMSYTV 1404

Query: 682  KRILKEYPINRQLSGADKSAAETALKFHPRWNEKIGTGLLEIKVGRHPEHNE-NCFFLIR 858
            ++IL +Y +++QL+ +DKS     L FHPR +EKIG G  +IKV  HPE+ +  CF L+R
Sbjct: 1405 RKILNKYSVDQQLNESDKSVLMMTLYFHPRRDEKIGIGAKDIKVINHPEYQDTRCFSLVR 1464

Query: 859  TDGTEEDFSYHKCINHALEIIAPEMGKTYRSK 954
            TDGT EDFSY KC+++ALEIIAP+  K Y  K
Sbjct: 1465 TDGTIEDFSYRKCLHNALEIIAPQRAKRYCEK 1496