BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00018473
         (536 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   110   1e-22
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...   105   3e-21
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...   105   3e-21
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...   103   2e-20
ref|XP_002873737.1| DNA-directed RNA polymerase [Arabidopsis lyr...    94   2e-17

>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial [Vitis vinifera]
           gi|298204431|emb|CBI16911.3| unnamed protein product
           [Vitis vinifera]
          Length = 1035

 Score =  110 bits (275), Expect = 1e-22
 Identities = 69/165 (41%), Positives = 98/165 (59%), Gaps = 26/165 (15%)
 Frame = +1

Query: 25  GFQKIGEVSARDECELLPLSA--RNQMDNNGVCFRNYASVSE-----EEKTDVSVPDEVQ 183
           GF++IGE+S+R++    P     RNQM  +G C ++YASV+E     + + DVS  DE+Q
Sbjct: 102 GFRRIGEISSREDAVGRPSFGCLRNQMGFSGFCPKSYASVAEAVSSTDVEEDVSASDEIQ 161

Query: 184 ELLNEVRKEDRRQYNKQWMHQKNGRVGNDQYK-MGLRRKQGKMDTEAWEQVAKEYQVLLN 360
           ELL E++KE++RQ N +   +     G +Q + + LRR+Q K++TEAWE  AKEY+ LL 
Sbjct: 162 ELLGEMKKEEKRQVNFKRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLM 221

Query: 361 DMCDHKLATTLPCMKPLI------------------RKGRSKAAY 441
           DMC+ KLA  LP MK L                   R G++KAAY
Sbjct: 222 DMCEQKLAPNLPYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAY 266


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
           AltName: Full=T7 bacteriophage-type single subunit RNA
           polymerase 2; Flags: Precursor
           gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score =  105 bits (263), Expect = 3e-21
 Identities = 68/166 (40%), Positives = 98/166 (59%), Gaps = 27/166 (16%)
 Frame = +1

Query: 25  GFQKIGEVSARDECELLPLSARNQMDNNGVCFRNYASVSE-------EEKTDVSVPDEVQ 183
           GFQ +GE    DE    PL  +NQ++NN  C ++YASV+E       + + DVSV DEV 
Sbjct: 91  GFQNLGEYLPGDEFLSRPL-IKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVH 149

Query: 184 ELLNEVRKEDRRQYNKQWMHQK--NGRVGNDQYKMGLRRKQGKMDTEAWEQVAKEYQVLL 357
           ELL E++KE+++Q+  +   Q+     +G+ +Y+  L+R+Q K++TEAWEQ AKEY+ LL
Sbjct: 150 ELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQT-LKRRQVKVETEAWEQAAKEYKELL 208

Query: 358 NDMCDHKLATTLPCMKPLI------------------RKGRSKAAY 441
            DMC+ KLA  LP +K L                    +G+SKAAY
Sbjct: 209 FDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAY 254


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
           sylvestris] gi|17221595|dbj|BAB78465.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score =  105 bits (263), Expect = 3e-21
 Identities = 68/166 (40%), Positives = 98/166 (59%), Gaps = 27/166 (16%)
 Frame = +1

Query: 25  GFQKIGEVSARDECELLPLSARNQMDNNGVCFRNYASVSE-------EEKTDVSVPDEVQ 183
           GFQ +GE    DE    PL  +NQ++NN  C ++YASV+E       + + DVSV DEV 
Sbjct: 91  GFQNLGEYLPGDEFLSRPL-IKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVH 149

Query: 184 ELLNEVRKEDRRQYNKQWMHQK--NGRVGNDQYKMGLRRKQGKMDTEAWEQVAKEYQVLL 357
           ELL E++KE+++Q+  +   Q+     +G+ +Y+  L+R+Q K++TEAWEQ AKEY+ LL
Sbjct: 150 ELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQT-LKRRQVKVETEAWEQAAKEYKELL 208

Query: 358 NDMCDHKLATTLPCMKPLI------------------RKGRSKAAY 441
            DMC+ KLA  LP +K L                    +G+SKAAY
Sbjct: 209 FDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAY 254


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial; AltName:
           Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
           single subunit RNA polymerase 2B; Flags: Precursor
           gi|21425665|emb|CAC95020.1| mitochondrial and
           chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score =  103 bits (257), Expect = 2e-20
 Identities = 69/167 (41%), Positives = 99/167 (59%), Gaps = 28/167 (16%)
 Frame = +1

Query: 25  GFQKIGEVSARDECELLPLSARNQMDNNGVCFR-NYASVSE-------EEKTDVSVPDEV 180
           GFQ +GE    DE    PL  +NQ+++N  C R +YASV+E       + + DVSV DEV
Sbjct: 91  GFQNLGEYLPGDEFLSRPL-LKNQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEV 149

Query: 181 QELLNEVRKEDRRQYNKQWMHQK--NGRVGNDQYKMGLRRKQGKMDTEAWEQVAKEYQVL 354
           QELL E++KE+++Q+  +   Q+     +G+ +Y+  L+R+Q K++TEAWEQ AKEY+ L
Sbjct: 150 QELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQT-LKRRQVKVETEAWEQAAKEYKEL 208

Query: 355 LNDMCDHKLATTLPCMKPLI------------------RKGRSKAAY 441
           L DMC+ KLA  LP +K L                    +G+SKAAY
Sbjct: 209 LFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAY 255


>ref|XP_002873737.1| DNA-directed RNA polymerase [Arabidopsis lyrata subsp. lyrata]
           gi|297319574|gb|EFH49996.1| DNA-directed RNA polymerase
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1009

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 61/165 (36%), Positives = 87/165 (52%), Gaps = 23/165 (13%)
 Frame = +1

Query: 16  NPC---GFQKIGEVSARDECELLPLSARNQMDNNGVCFRNYASVSEEE-KTDVSVPDEVQ 183
           +PC   GF+ +  ++ RDE       ++++   NG   R YASV+EE   TDV    EV 
Sbjct: 88  SPCYEMGFRSLSGITRRDEF------SKSERCLNGTLARGYASVAEEVLSTDVEEEPEVH 141

Query: 184 ELLNEVRKEDRRQYNKQWMHQKNGRVGNDQYKM-GLRRKQGKMDTEAWEQVAKEYQVLLN 360
           ELL E++KE +R+ ++ W  +K  + G  + K   L R+Q K++TE WE+ A EY  LL 
Sbjct: 142 ELLKEMKKEKKRESHRSWRMKKQEQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLT 201

Query: 361 DMCDHKLATTLPCMKPLI------------------RKGRSKAAY 441
           DMC+ KLA  LP +K L                   R G+SKA Y
Sbjct: 202 DMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATY 246