BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00016435
         (1232 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   414   e-113
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   408   e-111
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   400   e-109
ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]...   391   e-106
ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]...   390   e-106

>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  414 bits (1065), Expect = e-113
 Identities = 215/321 (66%), Positives = 242/321 (75%), Gaps = 9/321 (2%)
 Frame = +1

Query: 1    NKTTYKYLNVVWGNESSAARWQMAMISDSPPLREEFDQWVREVERSGGHMPTRQDVLDKR 180
            NKTTYKYLNVVWGNESSAARWQMAM+SDS PL EEF QWV+EV+RSGG MP++QDVL+K+
Sbjct: 336  NKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKK 395

Query: 181  DAIQKTGSFVYSAATVKQMLQEKKSATWRPLNVAAEKERLRRALEVAKENDDDAEVERIK 360
             AIQK  +FVYSAATVKQMLQEKKSA+ RPLNVAAEK+RLRR LE+A+   D+AEVERIK
Sbjct: 396  QAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKYDEAEVERIK 455

Query: 361  ARLQELEASRQVQEKDSKAIKLAEMNRKNRVENFKNASELKRVNTSLQAGEAGYDPFSRR 540
             RL ELEASRQ ++KD+KA+KLAEMNRKNR ENFKNASE+K VNT L+AGEAGYDPFSRR
Sbjct: 456  TRLLELEASRQAKQKDAKALKLAEMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRR 515

Query: 541  WTRSRNYY---------XXXXXXXXXXXXXXXXXXXXPLPTAIXXXXXXXXXXXXXXXXX 693
            WTRSRNYY                             P+                     
Sbjct: 516  WTRSRNYYAAKPGEKAAAGNNSVNGNVAGAGSNGTGAPVTAEAGMVATAAALEAAAGAGK 575

Query: 694  XXDTMAPVDQGTESNLLHNFDLPISLTVLQKFGGPQGAHAGYMARKQMVEAIYGVKVPDN 873
              DT APVDQGTESN+LHNF+LPISL +LQKFGG QGA AG+MARKQ +EA  G +V +N
Sbjct: 576  LVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQAGFMARKQKIEATVGFRVSEN 635

Query: 874  DGRRHALTLTVSDYKRRRGLL 936
            DGRRHALTLTVSDYKRRRGLL
Sbjct: 636  DGRRHALTLTVSDYKRRRGLL 656


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  408 bits (1048), Expect = e-111
 Identities = 211/321 (65%), Positives = 240/321 (74%), Gaps = 9/321 (2%)
 Frame = +1

Query: 1    NKTTYKYLNVVWGNESSAARWQMAMISDSPPLREEFDQWVREVERSGGHMPTRQDVLDKR 180
            NKTTYKYLNVVWGNESSAARWQMAM+SDS P+ EEF QWV+EV+ SGG MP++QDVL+K+
Sbjct: 336  NKTTYKYLNVVWGNESSAARWQMAMVSDSAPMEEEFKQWVKEVDCSGGRMPSKQDVLEKK 395

Query: 181  DAIQKTGSFVYSAATVKQMLQEKKSATWRPLNVAAEKERLRRALEVAKENDDDAEVERIK 360
             AIQK  +FVYSAATVKQMLQEKKSA+ RPLNVAAEK+RLRR LE+A+   D+AEVERIK
Sbjct: 396  QAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVERIK 455

Query: 361  ARLQELEASRQVQEKDSKAIKLAEMNRKNRVENFKNASELKRVNTSLQAGEAGYDPFSRR 540
             RLQELEASRQ ++KD+KA+KLAEMNRKNR ENFKNASELK VN  L+AGEAGYDPFSRR
Sbjct: 456  TRLQELEASRQAKQKDAKALKLAEMNRKNRFENFKNASELKPVNIGLKAGEAGYDPFSRR 515

Query: 541  WTRSRNYY---------XXXXXXXXXXXXXXXXXXXXPLPTAIXXXXXXXXXXXXXXXXX 693
            WTRSRNYY                             P+                     
Sbjct: 516  WTRSRNYYAAKPGEKAAAGNNIVNGNVAGAGSNATGAPVTAEAGMVATAAALEAAAGAGK 575

Query: 694  XXDTMAPVDQGTESNLLHNFDLPISLTVLQKFGGPQGAHAGYMARKQMVEAIYGVKVPDN 873
              DT APVDQGTESN+LHNF+LPISL +LQK+GG  GA AG+MARKQ +E+  G +V +N
Sbjct: 576  LVDTSAPVDQGTESNMLHNFELPISLALLQKYGGAPGAQAGFMARKQRIESTVGFRVSEN 635

Query: 874  DGRRHALTLTVSDYKRRRGLL 936
            DGRRHALTLTVSDYKRRRGLL
Sbjct: 636  DGRRHALTLTVSDYKRRRGLL 656


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  400 bits (1029), Expect = e-109
 Identities = 212/323 (65%), Positives = 239/323 (73%), Gaps = 11/323 (3%)
 Frame = +1

Query: 1    NKTTYKYLNVVWGNESSAARWQMAMISDSPPLREEFDQWVREVERSGGHMPTRQDVLDKR 180
            NKTTYKYLNV+WGNESSAARWQMAMISDS P  +E+ QWVREVERSGG MPT+QD+L+K+
Sbjct: 338  NKTTYKYLNVIWGNESSAARWQMAMISDSAPTEDEYKQWVREVERSGGRMPTKQDILEKK 397

Query: 181  DAIQKTGSFVYSAATVKQMLQEKKSATWRPLNVAAEKERLRRALEVAKENDDDAEVERIK 360
            +AI+K+ +FVYSAATVKQMLQEKKSA+ RPLNVAAEK+RLRR LEVA+   DDAEVERI+
Sbjct: 398  EAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSKQDDAEVERIR 457

Query: 361  ARLQELEASRQVQEKDSKAIKLAEMNRKNRVENFKNASELKRVNTSLQAGEAGYDPFSRR 540
            AR+QELEASRQ Q KD+KAI+LAEMNRKNR ENF+NASELK VNTSL+AGEAGYDPFSRR
Sbjct: 458  ARIQELEASRQTQGKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRR 517

Query: 541  WTRSRNYY-----XXXXXXXXXXXXXXXXXXXXPLPTAIXXXXXXXXXXXXXXXXXXXDT 705
            WTRSRNYY                            +A                    D 
Sbjct: 518  WTRSRNYYVSKPAGGDAAAATNNEASGTVAVANKTESAAGVSAEAGMAATAAALEAAADA 577

Query: 706  MAPVD------QGTESNLLHNFDLPISLTVLQKFGGPQGAHAGYMARKQMVEAIYGVKVP 867
               VD      QGTESN LHNF+LPISLT LQKFGG QGA AG+MARKQ +EA  G +V 
Sbjct: 578  GKLVDTAAPVDQGTESNTLHNFELPISLTALQKFGGAQGAQAGFMARKQRIEATIGCRVS 637

Query: 868  DNDGRRHALTLTVSDYKRRRGLL 936
            +ND +RH LTLTVSDYKRRRGLL
Sbjct: 638  ENDEKRHVLTLTVSDYKRRRGLL 660


>ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]
            gi|222859693|gb|EEE97240.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 664

 Score =  391 bits (1005), Expect = e-106
 Identities = 202/324 (62%), Positives = 236/324 (72%), Gaps = 12/324 (3%)
 Frame = +1

Query: 1    NKTTYKYLNVVWGNESSAARWQMAMISDSPPLREEFDQWVREVERSGGHMPTRQDVLDKR 180
            NK+TYKYLNV WG +SSAARWQMAM+SDS P  EE+ QWVRE ER GG +P++QD+L+K+
Sbjct: 341  NKSTYKYLNVTWGADSSAARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILEKK 400

Query: 181  DAIQKTGSFVYSAATVKQMLQEKKSATWRPLNVAAEKERLRRALEVAKENDDDAEVERIK 360
            +AI+K+ +FVYSAATVKQMLQEKKSA+ RPLNVAAEK+RLRR LE+A+   D+AEVERI+
Sbjct: 401  EAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSRHDEAEVERIE 460

Query: 361  ARLQELEASRQVQEKDSKAIKLAEMNRKNRVENFKNASELKRVNTSLQAGEAGYDPFSRR 540
            AR+ ELEASRQ + KD+KA++LAEMNRKNRVENF+NASELK +NT L+AGEAGYDPFSRR
Sbjct: 461  ARILELEASRQAKVKDAKALRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRR 520

Query: 541  WTRSRNYYXXXXXXXXXXXXXXXXXXXXPLPTA------------IXXXXXXXXXXXXXX 684
            WTRSRNYY                        A                           
Sbjct: 521  WTRSRNYYVSNPAGGDDAVAASNSEANDTAALADSDHVVAGAISESGVAATAAALDAAAD 580

Query: 685  XXXXXDTMAPVDQGTESNLLHNFDLPISLTVLQKFGGPQGAHAGYMARKQMVEAIYGVKV 864
                 DT APVDQGTESN +HNF+L ISL  LQKF GPQGAHAG+MARKQ +EA  G +V
Sbjct: 581  AGKLVDTSAPVDQGTESNTMHNFELEISLIALQKFRGPQGAHAGFMARKQRIEANVGCQV 640

Query: 865  PDNDGRRHALTLTVSDYKRRRGLL 936
             +NDGRRHALTLTV DYKRRRGLL
Sbjct: 641  RENDGRRHALTLTVGDYKRRRGLL 664


>ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 662

 Score =  390 bits (1003), Expect = e-106
 Identities = 200/324 (61%), Positives = 237/324 (73%), Gaps = 12/324 (3%)
 Frame = +1

Query: 1    NKTTYKYLNVVWGNESSAARWQMAMISDSPPLREEFDQWVREVERSGGHMPTRQDVLDKR 180
            NK+TYKYLNV WG ++SAARWQMAM+SDS P  EE+ QWVREVE  GG +P++QD+L+K+
Sbjct: 339  NKSTYKYLNVTWGADTSAARWQMAMVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKK 398

Query: 181  DAIQKTGSFVYSAATVKQMLQEKKSATWRPLNVAAEKERLRRALEVAKENDDDAEVERIK 360
            +AI+K+ +FVYSAATVKQMLQEKKSA+ RPLNVAAEK+RLRR LE+A+   D+AEVERI 
Sbjct: 399  EAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERIN 458

Query: 361  ARLQELEASRQVQEKDSKAIKLAEMNRKNRVENFKNASELKRVNTSLQAGEAGYDPFSRR 540
            AR++ELEASR  + KD+KAI+LAEMNRKNRVENF+NASE+K VNT L+AGEAGYDPFSRR
Sbjct: 459  ARIEELEASRHAKVKDAKAIRLAEMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRR 518

Query: 541  WTRSRNYYXXXXXXXXXXXXXXXXXXXXPLPTA------------IXXXXXXXXXXXXXX 684
            WTRSRNYY                     +  A                           
Sbjct: 519  WTRSRNYYVSKPAEADDPVATKISEANETVAVAASNQVVAGVMSEAGVAATEAALEAAAD 578

Query: 685  XXXXXDTMAPVDQGTESNLLHNFDLPISLTVLQKFGGPQGAHAGYMARKQMVEAIYGVKV 864
                 DT APVDQGTESN +H+F+L ISL  LQ+FGGPQGA AG+MARKQ +EA  G +V
Sbjct: 579  AGKLVDTSAPVDQGTESNTMHSFELEISLIALQEFGGPQGAQAGFMARKQRIEATVGCRV 638

Query: 865  PDNDGRRHALTLTVSDYKRRRGLL 936
            P+NDGRRHALTLTV DYKRRRGLL
Sbjct: 639  PENDGRRHALTLTVGDYKRRRGLL 662