BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00013811
         (881 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|2...   322   7e-86
ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I...   322   9e-86
ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabi...   317   3e-84
ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, I...   316   4e-84
ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrat...   316   4e-84

>ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|222873254|gb|EEF10385.1|
           predicted protein [Populus trichocarpa]
          Length = 206

 Score =  322 bits (825), Expect = 7e-86
 Identities = 165/206 (80%), Positives = 179/206 (86%)
 Frame = -3

Query: 870 MVLPDDEITRLYRIRKTVMQILRDRGYMVTDFEIEMTKYQFLQKYGDNMKREDLVLIKGL 691
           M L ++EI RL RIRKTVMQ+L+DRGY V DFEI+MT+ QF  KYG+NMKREDLV+ K  
Sbjct: 1   MTLTEEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTK 60

Query: 690 RNNSSEQIYVFFPEEQKVGVKTMKTYTNRMKEENVHRAILVVQQNLTPFARTCISEISSK 511
           RN+SS+QIYVFFPEE KVGVKTMKTYTNRMK ENV RAILVVQQNLTPFARTCI+EIS+K
Sbjct: 61  RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 510 FQLEVFQEAELLVNIKDHVLVPEHQXXXXXXXXXXXERYTVKETQLPRIQITDPIARYYG 331
           F LEVFQEAELLVNIK+HVLVPEHQ           ERYTVKETQLPRIQITDPIARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQITDPIARYYG 180

Query: 330 LKRGQVVKIIRPSETAGRYVTYRYVV 253
           LKRGQVVKIIRPSETAGRYVTYRYV+
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVI 206


>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 isoform 1 [Vitis vinifera]
           gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1 isoform 2
           [Vitis vinifera]
          Length = 206

 Score =  322 bits (824), Expect = 9e-86
 Identities = 161/206 (78%), Positives = 181/206 (87%)
 Frame = -3

Query: 870 MVLPDDEITRLYRIRKTVMQILRDRGYMVTDFEIEMTKYQFLQKYGDNMKREDLVLIKGL 691
           M   ++EI+RL+RIRKTVMQ+L+DRGY V DFEI MTK+QF+ K+G+NMKREDLV+ K  
Sbjct: 1   MSASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAK 60

Query: 690 RNNSSEQIYVFFPEEQKVGVKTMKTYTNRMKEENVHRAILVVQQNLTPFARTCISEISSK 511
           R +SS+QIYVFFPEEQKVGVKTMKTYTNRMK ENV RAILVVQQNLTPFARTCI+EIS+K
Sbjct: 61  RTDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 510 FQLEVFQEAELLVNIKDHVLVPEHQXXXXXXXXXXXERYTVKETQLPRIQITDPIARYYG 331
           F LEVFQEAELLVNIK+HVLVPEHQ           ERYTVKETQLPRIQ++DPIARY+G
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVSDPIARYFG 180

Query: 330 LKRGQVVKIIRPSETAGRYVTYRYVV 253
           LKRGQVVKIIRPSETAGRY+TYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYITYRYVV 206


>ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
           gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
           [Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
           polymerase I, II and III 24.3 kDa subunit [Arabidopsis
           thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
           II subunit E [Arabidopsis thaliana]
          Length = 205

 Score =  317 bits (811), Expect = 3e-84
 Identities = 156/205 (76%), Positives = 179/205 (87%)
 Frame = -3

Query: 867 VLPDDEITRLYRIRKTVMQILRDRGYMVTDFEIEMTKYQFLQKYGDNMKREDLVLIKGLR 688
           +L ++E+ RLYRI+KT+MQ+LRDRGY + D E+ MTK QF++K+GDNMKREDLV +K  R
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 687 NNSSEQIYVFFPEEQKVGVKTMKTYTNRMKEENVHRAILVVQQNLTPFARTCISEISSKF 508
           N++S+Q+Y+FFP+E KVGVKTMK YTNRMK ENV RAILVVQQNLTPFARTCISEISSKF
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120

Query: 507 QLEVFQEAELLVNIKDHVLVPEHQXXXXXXXXXXXERYTVKETQLPRIQITDPIARYYGL 328
            LEVFQEAE+LVNIK+HVLVPEHQ           ERYTVKETQLPRIQ+TDPIARY+GL
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180

Query: 327 KRGQVVKIIRPSETAGRYVTYRYVV 253
           KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205


>ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cucumis sativus]
          Length = 207

 Score =  316 bits (810), Expect = 4e-84
 Identities = 161/207 (77%), Positives = 178/207 (85%), Gaps = 1/207 (0%)
 Frame = -3

Query: 870 MVLPDDEITRLYRIRKTVMQILRDRGYMVTDFEIEMTKYQFLQKYGDNMKREDLVLIKGL 691
           MVL ++EITRL+RIRKTV Q+LRDRGY V DFEI+MT+ QF QKYG+NMKRED+V+ K  
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 690 RNNSSEQIYVFFPEEQKVGVKTMKTYTNRMKEENVHRAILVVQQNLTPFARTCISEISSK 511
           RN+SS+QIYVFFPEE KVG+K +KTYT RMK ENV RAILVVQQNLTPFAR C+SE +SK
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 510 -FQLEVFQEAELLVNIKDHVLVPEHQXXXXXXXXXXXERYTVKETQLPRIQITDPIARYY 334
            F LEVFQEAELLVNIKDHVLVPEHQ           ERYTVKETQLPRIQ+TDP+ARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 333 GLKRGQVVKIIRPSETAGRYVTYRYVV 253
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207


>ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
           gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 205

 Score =  316 bits (810), Expect = 4e-84
 Identities = 156/205 (76%), Positives = 180/205 (87%)
 Frame = -3

Query: 867 VLPDDEITRLYRIRKTVMQILRDRGYMVTDFEIEMTKYQFLQKYGDNMKREDLVLIKGLR 688
           +L ++EI RLYRI+KT+MQ+L+DRGY + D E+ MTK QF++K+GDNMKREDLV +K  R
Sbjct: 1   MLTEEEIKRLYRIQKTLMQMLKDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKVKR 60

Query: 687 NNSSEQIYVFFPEEQKVGVKTMKTYTNRMKEENVHRAILVVQQNLTPFARTCISEISSKF 508
           N++S+Q+Y+FFP+E KVGVKTMK YTNRMK ENV+RAILVVQQNLTPFARTCISEISSKF
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVYRAILVVQQNLTPFARTCISEISSKF 120

Query: 507 QLEVFQEAELLVNIKDHVLVPEHQXXXXXXXXXXXERYTVKETQLPRIQITDPIARYYGL 328
            LEVFQEAE+LVNIK+HVLVPEHQ           ERYTVKETQLPRIQ+TDPIARY+GL
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180

Query: 327 KRGQVVKIIRPSETAGRYVTYRYVV 253
           KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205