BLASTX nr result
ID: Scutellaria24_contig00012922
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Scutellaria24_contig00012922
(1327 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284465.1| PREDICTED: general transcription factor IIH ... 306 e-102
ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|2... 291 3e-76
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ... 277 4e-72
ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab... 275 2e-71
ref|NP_564050.1| transcription initiation factor TFIIH subunit H... 274 3e-71
>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
product [Vitis vinifera]
Length = 297
Score = 306 bits (785), Expect(2) = e-102
Identities = 146/163 (89%), Positives = 152/163 (93%)
Frame = -3
Query: 728 IQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSMVPIDSCVIGAQHSAFLQ 549
IQRVFR+GPLHP PRILCL GSPDGP QYVA+MN+IFSAQRSMVPIDSCVIGAQHSAFLQ
Sbjct: 133 IQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQ 192
Query: 548 QASYITGGVYLKPQLLDGLFQYLSTVFATDLHSRCFLQLPKPTGVDFRASCFCHKNTIDM 369
QASYITGGVYLKPQ LDGLFQYLSTVFATDLHSR FLQLPKP GVDFRASCFCHKNTIDM
Sbjct: 193 QASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDFRASCFCHKNTIDM 252
Query: 368 GYICSVCLSIFCKNQKKCSTCGSVFGQAQAQDSSTPDRKRKTP 240
GYICSVCLSIFCK+ KKCSTCGSVFGQAQ+ +S DRKRKTP
Sbjct: 253 GYICSVCLSIFCKHHKKCSTCGSVFGQAQSDGNSATDRKRKTP 295
Score = 93.2 bits (230), Expect(2) = e-102
Identities = 58/120 (48%), Positives = 70/120 (58%), Gaps = 8/120 (6%)
Frame = -1
Query: 1186 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTLPFSKFLTHXXXXXXXXXXXXXXXXXX 1007
M PV SKLY+DDVSLL+VL+DTNPFFW++ ++LPFSKFL+H
Sbjct: 1 MAPVPSKLYSDDVSLLVVLLDTNPFFWST--ASLPFSKFLSHVLAFLNSILLINQLNQVV 58
Query: 1006 XXASGYNSCDYIFDSSD-SQSQNLR-------AEYLLQKLEEFVDKDESLCHEDLVNGQG 851
A+G NSC++IFDSS + NL LLQKLEEFV DE L E L G G
Sbjct: 59 VIATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIG 118
>ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|222856878|gb|EEE94425.1|
predicted protein [Populus trichocarpa]
Length = 289
Score = 291 bits (745), Expect = 3e-76
Identities = 137/163 (84%), Positives = 147/163 (90%)
Frame = -3
Query: 728 IQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSMVPIDSCVIGAQHSAFLQ 549
IQRVFRSGPLHP PRILCL GSPDGP QYVA+MN+IFSAQRSMVPIDSC +GA +SAFLQ
Sbjct: 125 IQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGAHNSAFLQ 184
Query: 548 QASYITGGVYLKPQLLDGLFQYLSTVFATDLHSRCFLQLPKPTGVDFRASCFCHKNTIDM 369
QASYITGGVY+KPQ LDGLFQYL+TVFATDLHSR F+QLP+P GVDFRASCFCHK TIDM
Sbjct: 185 QASYITGGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFRASCFCHKTTIDM 244
Query: 368 GYICSVCLSIFCKNQKKCSTCGSVFGQAQAQDSSTPDRKRKTP 240
GYICSVCLSIFC + KKCSTCGSVFGQAQ+ SST D KRK P
Sbjct: 245 GYICSVCLSIFCNHHKKCSTCGSVFGQAQSDTSSTSDLKRKAP 287
Score = 79.0 bits (193), Expect = 3e-12
Identities = 49/103 (47%), Positives = 61/103 (59%), Gaps = 8/103 (7%)
Frame = -1
Query: 1156 DDVSLLMVLIDTNPFFWNSVKSTLPFSKFLTHXXXXXXXXXXXXXXXXXXXXASGYNSCD 977
DDVSL++VL+DTNPFFW + S+L FS+FL+H ASGYN+CD
Sbjct: 2 DDVSLVVVLLDTNPFFW-TPPSSLSFSQFLSHVLAFVNSILLLNQLNQVVVIASGYNTCD 60
Query: 976 YIFDSSDSQSQ------NLRAEY--LLQKLEEFVDKDESLCHE 872
YI+DSS SQ + + Y LLQKLEEF+ KDE L E
Sbjct: 61 YIYDSSSDASQLGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKE 103
>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
sativus]
Length = 295
Score = 277 bits (709), Expect = 4e-72
Identities = 132/163 (80%), Positives = 141/163 (86%)
Frame = -3
Query: 728 IQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSMVPIDSCVIGAQHSAFLQ 549
IQ+VFRSG LHP PRILCL GSPDGP QYVAIMN+IFSAQRSMVPIDSC IG+ +SAFLQ
Sbjct: 132 IQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQ 191
Query: 548 QASYITGGVYLKPQLLDGLFQYLSTVFATDLHSRCFLQLPKPTGVDFRASCFCHKNTIDM 369
QASYITGGVYLKPQ +DGLFQYLSTVF TDLHSR FLQLPK GVDFRASCFCHK TIDM
Sbjct: 192 QASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDM 251
Query: 368 GYICSVCLSIFCKNQKKCSTCGSVFGQAQAQDSSTPDRKRKTP 240
GY+CSVCLSIFCK+ KKCSTCGSVFG+ + S KRKTP
Sbjct: 252 GYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSVSKLKRKTP 294
Score = 81.6 bits (200), Expect = 4e-13
Identities = 49/117 (41%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Frame = -1
Query: 1186 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTLPFSKFLTHXXXXXXXXXXXXXXXXXX 1007
M SKLY DDVSLL+VL+DTNPFFW++ S LPFSKFL+H
Sbjct: 1 MASAPSKLYADDVSLLVVLLDTNPFFWST--SALPFSKFLSHVLAFLNSILVLNQLNEVV 58
Query: 1006 XXASGYNSCDYIFDSSDSQSQNLR-------AEYLLQKLEEFVDKDESLCHEDLVNG 857
+GY SC Y+++SS + L LL+ LEEFV DE ED G
Sbjct: 59 VIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGG 115
>ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein
ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata]
Length = 301
Score = 275 bits (703), Expect = 2e-71
Identities = 132/164 (80%), Positives = 144/164 (87%), Gaps = 1/164 (0%)
Frame = -3
Query: 728 IQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSMVPIDSCVIGAQHSAFLQ 549
IQRVFRSG LHP PRILCL GSPDGP QYVA+MNSIFSAQR MVPIDSC IG Q+SAFLQ
Sbjct: 136 IQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQ 195
Query: 548 QASYITGGVYLKPQLLDGLFQYLSTVFATDLHSRCFLQLPKPTGVDFRASCFCHKNTIDM 369
QASYITGGV+ P+ LDGLFQYL+T+FATDLHSR F+QLPKP GVDFRASCFCHK TIDM
Sbjct: 196 QASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRSFVQLPKPIGVDFRASCFCHKKTIDM 255
Query: 368 GYICSVCLSIFCKNQKKCSTCGSVFGQAQAQD-SSTPDRKRKTP 240
GYICSVCLSIFC++ KKCSTCGSVFGQ++ D SS D+KRK P
Sbjct: 256 GYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSVSDKKRKAP 299
Score = 80.9 bits (198), Expect = 7e-13
Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 10/117 (8%)
Frame = -1
Query: 1186 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTLPFSKFLTHXXXXXXXXXXXXXXXXXX 1007
M V SK Y+DDVSLL++L+DTNP FW++ +++ FS+FL+H
Sbjct: 1 MPSVVSKQYSDDVSLLVLLLDTNPLFWST--TSITFSQFLSHVLAFLNAVLGLNQLNQVV 58
Query: 1006 XXASGYNSCDYIFDSS-DSQSQNLRAE---------YLLQKLEEFVDKDESLCHEDL 866
A+GY+SCDYI+DSS S NL + LL+KLE+FV KDE L E++
Sbjct: 59 VIATGYSSCDYIYDSSLTSNHGNLESNGTGMPALFGSLLKKLEDFVTKDEELSREEV 115
>ref|NP_564050.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
thaliana] gi|21537277|gb|AAM61618.1| unknown
[Arabidopsis thaliana] gi|92856638|gb|ABE77412.1|
At1g18340 [Arabidopsis thaliana]
gi|332191584|gb|AEE29705.1| transcription initiation
factor TFIIH subunit H3 [Arabidopsis thaliana]
Length = 301
Score = 274 bits (701), Expect = 3e-71
Identities = 132/164 (80%), Positives = 144/164 (87%), Gaps = 1/164 (0%)
Frame = -3
Query: 728 IQRVFRSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSMVPIDSCVIGAQHSAFLQ 549
IQRVFRSG LHP PRILCL GSPDGP QYVA+MNSIFSAQR MVPIDSC IG Q+SAFLQ
Sbjct: 136 IQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQ 195
Query: 548 QASYITGGVYLKPQLLDGLFQYLSTVFATDLHSRCFLQLPKPTGVDFRASCFCHKNTIDM 369
QASYITGGV+ P+ LDGLFQYL+T+FATDLHSR F+QLPKP GVDFRASCFCHK TIDM
Sbjct: 196 QASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRASCFCHKKTIDM 255
Query: 368 GYICSVCLSIFCKNQKKCSTCGSVFGQAQAQD-SSTPDRKRKTP 240
GYICSVCLSIFC++ KKCSTCGSVFGQ++ D SS D+KRK P
Sbjct: 256 GYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKRKAP 299
Score = 82.4 bits (202), Expect = 2e-13
Identities = 48/117 (41%), Positives = 70/117 (59%), Gaps = 10/117 (8%)
Frame = -1
Query: 1186 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTLPFSKFLTHXXXXXXXXXXXXXXXXXX 1007
M ++SK Y+DDVSLL++L+DTNP FW++ +++ FS+FL+H
Sbjct: 1 MPAIASKQYSDDVSLLVLLLDTNPLFWST--TSITFSQFLSHVLAFLNAVLGLNQLNQVV 58
Query: 1006 XXASGYNSCDYIFDSS--------DSQSQNLRAEY--LLQKLEEFVDKDESLCHEDL 866
A+GY+SCDYI+DSS +S + A + LL+KLEEFV KDE L E++
Sbjct: 59 VIATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEV 115