BLASTX nr result
ID: Scutellaria24_contig00012470
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Scutellaria24_contig00012470
(1806 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc... 687 0.0
emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera] 635 e-179
ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arab... 563 e-158
ref|NP_175971.3| transcription initiation factor TFIIH subunit H... 557 e-156
ref|XP_002530618.1| TFIIH basal transcription factor complex sub... 553 e-155
>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
1-1 [Vitis vinifera] gi|296090002|emb|CBI39821.3| unnamed
protein product [Vitis vinifera]
Length = 602
Score = 687 bits (1773), Expect = 0.0
Identities = 343/511 (67%), Positives = 417/511 (81%), Gaps = 3/511 (0%)
Frame = -3
Query: 1789 DVCRELVATAIAFHTESGRAPPEKSAAPVNNEQLSRAETERRIKLLQENSELQTLHKQFV 1610
+VCRE V A+A +E+ +A E+SA + +EQLS E ERRIKLL+E+SELQ LHKQFV
Sbjct: 90 EVCREFVGRALAKFSEASKAGSEQSAVKLFDEQLSTIEMERRIKLLREDSELQKLHKQFV 149
Query: 1609 FGGILTDAEFWATRKKLLEQNDSRRPKQRIALKNEMWT-VKPLSDGQSNRVTFNLTPEII 1433
G+LT+AEFWATRKKLL+ N SR KQR+ K+ M + +KPL+DG++NRVTFNLTPEII
Sbjct: 150 LSGVLTEAEFWATRKKLLDGNTSRTSKQRVGFKSAMISDLKPLTDGRTNRVTFNLTPEII 209
Query: 1432 HQIFAEKPAVRQAYLNFVPKKMTEKEFWTKYSRAEYLHSTKNVVXXXXXXXXXXXXAVFL 1253
HQIFAEKPAV QA+LNFVP KMTEK+FW KY RAEYLH T+N V AVFL
Sbjct: 210 HQIFAEKPAVHQAFLNFVPNKMTEKDFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVFL 269
Query: 1252 KRDDMLANEARRKIRRVDPTVDMEADEGDDYIHLPDHGLLQDEAKDVLESQYEPFRRSFA 1073
K DD+LANEARRKIRRVDPT+DMEAD+GDDY+HLPDHG+ +D +K++++ QYE +RR+ +
Sbjct: 270 KHDDILANEARRKIRRVDPTLDMEADQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTLS 329
Query: 1072 QDLNQHAAVVLQGRVVDVELSDTRSVAEALTRRKQAELSDETSNINLDRDLPDRISRTME 893
QDLN+HAAVVL+GR +DVEL DTR+VAEAL + K+ E ++E S+ ++ R+ +RISR E
Sbjct: 330 QDLNRHAAVVLEGRPIDVELEDTRTVAEALAKSKRVEAANEKSDGSVTRERLERISRMTE 389
Query: 892 IEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDAASGGKPLKASMSSREAYGSVRD 713
IEDLQ P+D A L IKDPRDYFDSQQANALK LGD +G K +K S+S++EAYGS+R
Sbjct: 390 IEDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSTQEAYGSLRG 449
Query: 712 LVSDIRVMGLSEPIMNQEVALKVLNGLTQNISSTKLHLGNNPNESVLDRLPKVIKEELLH 533
+S+I+ +GLS+PI+ ++ALKVLNGLTQNISSTK HLG NP ESVLDRLP + KEELLH
Sbjct: 450 FISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLPIITKEELLH 509
Query: 532 HWTSVQELLKHFWSSYPITTKYLYNKVTRLKDAMSQVYPKLQEMKESVQSDFRHQVSLLV 353
HWTS+QELL+HFWSSYPITT YLY K +RLKDAMSQ+YPKLQE+KESVQSDFRHQVSLLV
Sbjct: 510 HWTSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKLQEIKESVQSDFRHQVSLLV 569
Query: 352 HPMLQALDAAFAQYDADVQRRSAKT--PPNG 266
PMLQALDAAFA YDAD Q+RSA++ PNG
Sbjct: 570 QPMLQALDAAFAHYDADQQKRSARSGERPNG 600
>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
Length = 735
Score = 635 bits (1637), Expect = e-179
Identities = 325/528 (61%), Positives = 396/528 (75%), Gaps = 44/528 (8%)
Frame = -3
Query: 1789 DVCRELVATAIAFHTESGRAPPEKSAAPVNNEQLSRAETERRIKLLQEN----------- 1643
+VCRE V A+A +E+ +A E+SA + +EQLS E ERRIKLL+E+
Sbjct: 90 EVCREFVGKALAKFSEASKAGSEQSAVKLFDEQLSTIEMERRIKLLREDRHSVPEEKFGV 149
Query: 1642 --------------------------------SELQTLHKQFVFGGILTDAEFWATRKKL 1559
SELQ LHKQFV G+LT+AEFWATRKKL
Sbjct: 150 LLLKGILPLFGETIIAMKLIDSGIASKVKWDCSELQKLHKQFVLSGVLTEAEFWATRKKL 209
Query: 1558 LEQNDSRRPKQRIALKNEMWT-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLNF 1382
L+ N SR KQR+ K+ M + +KPL+DG++NRVTFNLTPEIIHQIFAEKPAV QA+LNF
Sbjct: 210 LDGNTSRTSKQRVGFKSAMISDLKPLTDGRTNRVTFNLTPEIIHQIFAEKPAVHQAFLNF 269
Query: 1381 VPKKMTEKEFWTKYSRAEYLHSTKNVVXXXXXXXXXXXXAVFLKRDDMLANEARRKIRRV 1202
VP KMTEK+FW KY RAEYLH T+N V AVFLK DD+LA+EARRKIRRV
Sbjct: 270 VPNKMTEKDFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVFLKHDDILASEARRKIRRV 329
Query: 1201 DPTVDMEADEGDDYIHLPDHGLLQDEAKDVLESQYEPFRRSFAQDLNQHAAVVLQGRVVD 1022
DPT+DMEAD+GDDY+HLPDHG+ +D +K++++ QYE +RR+ +QDLN+HAAVVL+GR +D
Sbjct: 330 DPTLDMEADQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTLSQDLNRHAAVVLEGRPID 389
Query: 1021 VELSDTRSVAEALTRRKQAELSDETSNINLDRDLPDRISRTMEIEDLQGPQDPAVAPLSI 842
VEL DTR+VAEAL + K+ E ++E S+ ++ R+ +RISR EIEDLQ P+D A L I
Sbjct: 390 VELEDTRTVAEALAKSKRVEAANEKSDGSVTRERLERISRMTEIEDLQAPRDLPFAALCI 449
Query: 841 KDPRDYFDSQQANALKALGDAASGGKPLKASMSSREAYGSVRDLVSDIRVMGLSEPIMNQ 662
KDPRDYFDSQQANALK LGD +G K +K S+SS+EAYGS+R +S+I+ +GLS+PI+
Sbjct: 450 KDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSSQEAYGSLRGFISEIKSVGLSDPIVKP 509
Query: 661 EVALKVLNGLTQNISSTKLHLGNNPNESVLDRLPKVIKEELLHHWTSVQELLKHFWSSYP 482
++ALKVLNGLTQNISSTK HLG NP ESVLDRLP + KEELLHHWTS+QELL+HFWSSYP
Sbjct: 510 DIALKVLNGLTQNISSTKFHLGKNPQESVLDRLPIITKEELLHHWTSIQELLRHFWSSYP 569
Query: 481 ITTKYLYNKVTRLKDAMSQVYPKLQEMKESVQSDFRHQVSLLVHPMLQ 338
ITT YLY K +RLKDAMSQ+YPKLQE+KESVQSDFRHQVSLLV PMLQ
Sbjct: 570 ITTTYLYTKASRLKDAMSQIYPKLQEIKESVQSDFRHQVSLLVQPMLQ 617
>ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arabidopsis lyrata subsp.
lyrata] gi|297340367|gb|EFH70784.1| hypothetical protein
ARALYDRAFT_892577 [Arabidopsis lyrata subsp. lyrata]
Length = 592
Score = 563 bits (1450), Expect = e-158
Identities = 301/512 (58%), Positives = 374/512 (73%), Gaps = 6/512 (1%)
Frame = -3
Query: 1783 CRELVATAIAFHTESGRAPPEKSAAPVNNEQLSRAETERRIKLLQENSELQTLHKQFVFG 1604
CR+ + A+A E P KS ++EQLS E E R KLL+ENSELQ LHKQFV
Sbjct: 91 CRDFITKALAKCEEE----PNKSVVSTSSEQLSIKELELRFKLLRENSELQRLHKQFVES 146
Query: 1603 GILTDAEFWATRKKLLEQNDSRRPKQRIALKNEMWT-VKPLSDGQSNRVTFNLTPEIIHQ 1427
+LT+ EFWATRKKLL ++ R+ KQ++ LK+ M + +KP +DG++NRVTFNLTPEII Q
Sbjct: 147 KVLTEDEFWATRKKLLGKDSIRKSKQQVGLKSMMVSGIKPSTDGRTNRVTFNLTPEIIFQ 206
Query: 1426 IFAEKPAVRQAYLNFVPKKMTEKEFWTKYSRAEYLHSTKNVVXXXXXXXXXXXXAVFLKR 1247
IFAEKPAVRQA++N+VP KMTEK+FWTKY RAEYL+STKN AVFLK
Sbjct: 207 IFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVFLKP 266
Query: 1246 DDMLANEARRKIRRVDPTVDMEADEGDDYIHLPDHGLLQDEAKDVLESQYEPFRRSFAQD 1067
D++LA E R+KIRRVDPT+DMEAD+GDDY HL DHG+ +D DV+E Q + FRRS QD
Sbjct: 267 DEILARETRQKIRRVDPTLDMEADQGDDYTHLMDHGIQRDGTMDVVEPQNDQFRRSLLQD 326
Query: 1066 LNQHAAVVLQGRVVDVELSDTRSVAEALTRRKQAELSD--ETSNINLDRDLPDRISRTME 893
LN+HAAVVL+GR +DVE DTR VAEALTR KQ +D T + NL+R +R+SR
Sbjct: 327 LNRHAAVVLEGRSIDVESEDTRIVAEALTRVKQVSKADGETTKDANLER--LERMSRLAG 384
Query: 892 IEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDAASGGKPLKASMSSREAYGSVRD 713
+EDLQ PQ+ +APLSIKDPRDYF+SQQ N L + G K LK ++ EAYG +++
Sbjct: 385 MEDLQAPQNFPLAPLSIKDPRDYFESQQGNVL----NVPRGAKGLKRNV--HEAYGLLKE 438
Query: 712 LVSDIRVMGLSEPIMNQEVALKVLNGLTQNISSTKLHLGNNPNESVLDRLPKVIKEELLH 533
+ +IR GLS+P++ EV+ +V + LT+ IS+ K +G NP ES LDRLPK K+E+LH
Sbjct: 439 SILEIRATGLSDPLIRPEVSFEVFSSLTRTISTAKNIIGKNPRESFLDRLPKSTKDEVLH 498
Query: 532 HWTSVQELLKHFWSSYPITTKYLYNKVTRLKDAMSQVYPKLQEMKESVQSDFRHQVSLLV 353
HWTS+QELL+HFWSSYPITT YL+ KV +LKDAMS Y KL+ MKESVQSD RHQVSLLV
Sbjct: 499 HWTSIQELLRHFWSSYPITTTYLHTKVGKLKDAMSNTYSKLEAMKESVQSDLRHQVSLLV 558
Query: 352 HPMLQALDAAFAQYDADVQRRSAKT---PPNG 266
PM QALDAAF Y+AD+QRR+AK+ PNG
Sbjct: 559 RPMQQALDAAFQHYEADLQRRTAKSGGERPNG 590
>ref|NP_175971.3| transcription initiation factor TFIIH subunit H1 [Arabidopsis
thaliana] gi|122215373|sp|Q3ECP0.1|TFB1A_ARATH RecName:
Full=Probable RNA polymerase II transcription factor B
subunit 1-1; AltName: Full=General transcription and DNA
repair factor IIH subunit TFB1-1; Short=AtTFB1-1;
Short=TFIIH subunit TFB1-1 gi|110741140|dbj|BAE98663.1|
hypothetical protein [Arabidopsis thaliana]
gi|332195172|gb|AEE33293.1| transcription initiation
factor TFIIH subunit H1 [Arabidopsis thaliana]
Length = 591
Score = 557 bits (1436), Expect = e-156
Identities = 294/509 (57%), Positives = 369/509 (72%), Gaps = 3/509 (0%)
Frame = -3
Query: 1783 CRELVATAIAFHTESGRAPPEKSAAPVNNEQLSRAETERRIKLLQENSELQTLHKQFVFG 1604
CR+ + A+A P KS ++EQLS E E R KLL+ENSELQ LHKQFV
Sbjct: 91 CRDFITKALA----KCELEPNKSVVSTSSEQLSIKELELRFKLLRENSELQRLHKQFVES 146
Query: 1603 GILTDAEFWATRKKLLEQNDSRRPKQRIALKNEMWT-VKPLSDGQSNRVTFNLTPEIIHQ 1427
+LT+ EFWATRKKLL ++ R+ KQ++ LK+ M + +KP +DG++NRVTFNLTPEII Q
Sbjct: 147 KVLTEDEFWATRKKLLGKDSIRKSKQQLGLKSMMVSGIKPSTDGRTNRVTFNLTPEIIFQ 206
Query: 1426 IFAEKPAVRQAYLNFVPKKMTEKEFWTKYSRAEYLHSTKNVVXXXXXXXXXXXXAVFLKR 1247
IFAEKPAVRQA++N+VP KMTEK+FWTKY RAEYL+STKN AVFLK
Sbjct: 207 IFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVFLKP 266
Query: 1246 DDMLANEARRKIRRVDPTVDMEADEGDDYIHLPDHGLLQDEAKDVLESQYEPFRRSFAQD 1067
D++LA E R KIRRVDPT+DMEAD+GDDY HL DHG+ +D DV+E Q + F+RS QD
Sbjct: 267 DEILARETRHKIRRVDPTLDMEADQGDDYTHLMDHGIQRDGTMDVVEPQNDQFKRSLLQD 326
Query: 1066 LNQHAAVVLQGRVVDVELSDTRSVAEALTRRKQAELSDETSNINLDRDLPDRISRTMEIE 887
LN+HAAVVL+GR +DVE DTR VAEALTR KQ +D + + +++ +R+SR +E
Sbjct: 327 LNRHAAVVLEGRSIDVESEDTRIVAEALTRVKQVSKADGETTKDANQERLERMSRVAGME 386
Query: 886 DLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDAASGGKPLKASMSSREAYGSVRDLV 707
DLQ PQ+ +APLSIKDPRDYF+SQQ N L + G K LK ++ EAYG +++ +
Sbjct: 387 DLQAPQNFPLAPLSIKDPRDYFESQQGNVL----NVPRGAKGLKRNV--HEAYGLLKESI 440
Query: 706 SDIRVMGLSEPIMNQEVALKVLNGLTQNISSTKLHLGNNPNESVLDRLPKVIKEELLHHW 527
+IR GLS+P++ EV+ +V + LT+ I++ K G NP ES LDRLPK K+E+LHHW
Sbjct: 441 LEIRATGLSDPLIKPEVSFEVFSSLTRTIATAKNINGKNPRESFLDRLPKSTKDEVLHHW 500
Query: 526 TSVQELLKHFWSSYPITTKYLYNKVTRLKDAMSQVYPKLQEMKESVQSDFRHQVSLLVHP 347
TS+QELLKHFWSSYPITT YL+ KV +LKDAMS Y KL+ MKESVQSD RHQVSLLV P
Sbjct: 501 TSIQELLKHFWSSYPITTTYLHTKVGKLKDAMSNTYSKLEAMKESVQSDLRHQVSLLVRP 560
Query: 346 MLQALDAAFAQYDADVQRRSAKT--PPNG 266
M QALDAAF Y+ D+QRR+AK+ PNG
Sbjct: 561 MQQALDAAFHHYEVDLQRRTAKSGERPNG 589
>ref|XP_002530618.1| TFIIH basal transcription factor complex subunit, putative [Ricinus
communis] gi|223529828|gb|EEF31761.1| TFIIH basal
transcription factor complex subunit, putative [Ricinus
communis]
Length = 597
Score = 553 bits (1425), Expect = e-155
Identities = 294/513 (57%), Positives = 378/513 (73%), Gaps = 6/513 (1%)
Frame = -3
Query: 1786 VCRELVATAIAFHTESGRAPPEKSAAPVNNEQLSRAETERRIKLLQENSELQTLHKQFVF 1607
+C+E+V A++ + G P A V ++Q S E R+ LL+EN ELQ LHKQFV
Sbjct: 89 ICKEIVGKALS---KLGDTPKPPDAPEVPSDQPSTEELLLRMNLLRENLELQKLHKQFVS 145
Query: 1606 GGILTDAEFWATRKKLLEQNDSRRPKQRIALKNEMWT-VKPLSDGQSNRVTFNLTPEIIH 1430
+LTD+EFWATRKKLL SR+ KQR+ LK+ M KPL DGQ+N+VTFNLTPEI+
Sbjct: 146 DRVLTDSEFWATRKKLLNGEFSRKSKQRVGLKSVMLADSKPLIDGQTNKVTFNLTPEIVR 205
Query: 1429 QIFAEKPAVRQAYLNFVPKKMTEKEFWTKYSRAEYLHSTKNVVXXXXXXXXXXXXAVFLK 1250
+IFAEKPAV QAYL+ VP KM+E++FWTKY RAEYL ++N+ A+FLK
Sbjct: 206 EIFAEKPAVHQAYLSLVPNKMSERDFWTKYCRAEYLQRSRNIHAAAAEAAEDEELALFLK 265
Query: 1249 RDDMLANEARRKIRRVDPTVDMEADEGDDYIHLPDHGLLQDEAKDVLESQYEPFRRSFAQ 1070
DD+LA+E R+KIR VDPT+DMEAD+GDDY HLPDHG+++D +KDV+ESQ+EP+RR+ Q
Sbjct: 266 PDDILASETRQKIRCVDPTLDMEADQGDDYTHLPDHGIVRDGSKDVIESQHEPYRRTLLQ 325
Query: 1069 DLNQHAAVVLQGRVVDVE-LSDTRSVAEALTRRKQA-ELSDETSNINLDRDLPDRISRTM 896
DLN+HAAVVL+G +D E L DT++VA+AL R K+ + + ++ N +++ +RIS+ M
Sbjct: 326 DLNRHAAVVLEGTAIDDEQLQDTKAVADALARSKRGIKTINREADGNANQERSNRISQMM 385
Query: 895 EIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDAASGGKPLKASMSSREAYGSVR 716
EIEDLQG D +APL IKDPRDYFDSQQA+ALK D SG + + S+SS+EAY S+R
Sbjct: 386 EIEDLQGSNDHHLAPLCIKDPRDYFDSQQASALKNSRDIPSGTEAARCSLSSQEAYASLR 445
Query: 715 DLVSDIRVMGLSEPIMNQEVALKVLNGLTQNISSTKLHLGNNPNESVLDRLPKVIKEELL 536
D ++ + MGL++PI+ E+A KVL+ LT NISSTK HLG N ESVLDRLP IKEELL
Sbjct: 446 DSITQTKAMGLNDPIVKPEIATKVLSILTHNISSTKYHLGKNSRESVLDRLPNTIKEELL 505
Query: 535 HHWTSVQELLKHFWSSYPITTKYLYNKVTRLKDAMSQVYPKLQEMKESVQSDFR-HQVSL 359
HHW S++ELL+H+WSSYPITT YLY KV+RLKDAMS++ +LQEMKESVQSD H SL
Sbjct: 506 HHWMSIEELLRHYWSSYPITTAYLYAKVSRLKDAMSKIDSQLQEMKESVQSDLXFHATSL 565
Query: 358 LVHPMLQALDAAFAQYDADVQRRSAKTP--PNG 266
+ P AL+AA YDAD+Q+RSAK+ PNG
Sbjct: 566 GIVP---ALEAAMQHYDADLQKRSAKSAERPNG 595