BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00011939
         (1385 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   553   e-155
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   546   e-153
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   545   e-153
ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-...   526   e-147
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II su...   525   e-147

>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
           gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
           II subunit, putative [Ricinus communis]
          Length = 318

 Score =  553 bits (1426), Expect = e-155
 Identities = 279/319 (87%), Positives = 300/319 (94%)
 Frame = +2

Query: 20  MEGVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSS 199
           MEG SYQRFP+IKIR ++DD+ KFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 200 VLNDEFIAHRLGLIPLKSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCINDQTLDV 379
           VLNDEFIAHRLGLIPL SERAM+MRFSRDCDACDGDGQC+YCSVEFHLRAKCI DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120

Query: 380 TSKDLYSSDHTVVPVDFSDSSAGIDSSDNRGIIIVKLRRGQELILRAIARKGIGKDHAKW 559
           TSKDLYSSDHTVVPVDFSDSS G DSS+ RGIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSS-GYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 179

Query: 560 SPAATVTFMYEPDIYINEEMMESLSLKEKEEFVESSPTKVFDINPNTGQVYVCDAEAYTY 739
           SPAATVTFMYEPDI+INE++MESLSL+EK+ +VESSPTKVFDI+PNT QV V D EAYTY
Sbjct: 180 SPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTY 239

Query: 740 DDEVIKKAESMGKPGLVEIHAKEDSFIFTVETTGGIKASQLFLNAIEVLKQKLDAVRLSA 919
           D+EVIKKAESMGKPGLV I AKEDSFIFTVE+TG IKASQL LNAIE+LKQKLDAVRLS 
Sbjct: 240 DEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSE 299

Query: 920 DTVEADEQFGELGAHMRGG 976
           DTVEAD+QFGELGAHMRGG
Sbjct: 300 DTVEADDQFGELGAHMRGG 318


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
           vinifera]
          Length = 318

 Score =  546 bits (1408), Expect = e-153
 Identities = 276/319 (86%), Positives = 301/319 (94%)
 Frame = +2

Query: 20  MEGVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSS 199
           MEGVSYQRFPKIKIR V+DD+ KFELRETDAS+ANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 200 VLNDEFIAHRLGLIPLKSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCINDQTLDV 379
           VLNDEFIAHRLGLIPL SERAMAMRFSRDCDACDGDGQCE+CSVEFHLRAKC+ D+TLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 380 TSKDLYSSDHTVVPVDFSDSSAGIDSSDNRGIIIVKLRRGQELILRAIARKGIGKDHAKW 559
           TSKDL SSDHTVVPVDFSDSS G DS+D +GIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121 TSKDLISSDHTVVPVDFSDSS-GYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 179

Query: 560 SPAATVTFMYEPDIYINEEMMESLSLKEKEEFVESSPTKVFDINPNTGQVYVCDAEAYTY 739
           SPAATVTFMYEP+I+INE++MESL+L+EK  +VESSPTKVFDI+ ++ QV V DAEAYTY
Sbjct: 180 SPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTY 239

Query: 740 DDEVIKKAESMGKPGLVEIHAKEDSFIFTVETTGGIKASQLFLNAIEVLKQKLDAVRLSA 919
           DDEV+KKAE+MGKPGLVEI+AKEDSFIFTVE+TG IKASQL LNAI+VLKQKLDAVRLS 
Sbjct: 240 DDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSE 299

Query: 920 DTVEADEQFGELGAHMRGG 976
           DTVEAD+QFGELGAHMRGG
Sbjct: 300 DTVEADDQFGELGAHMRGG 318


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  545 bits (1405), Expect = e-153
 Identities = 275/319 (86%), Positives = 301/319 (94%)
 Frame = +2

Query: 20  MEGVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSS 199
           MEGVSYQRFPKIKIR V+DD+ KFELRETDAS+ANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 200 VLNDEFIAHRLGLIPLKSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCINDQTLDV 379
           VLNDEFIAHRLGLIPL SERAM+MRFSRDCDACDGDGQCE+CSVEFHLRAKC+ D+TLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 380 TSKDLYSSDHTVVPVDFSDSSAGIDSSDNRGIIIVKLRRGQELILRAIARKGIGKDHAKW 559
           TSKDL SSDHTVVPVDFSDSS G DS+D +GIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121 TSKDLISSDHTVVPVDFSDSS-GYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 179

Query: 560 SPAATVTFMYEPDIYINEEMMESLSLKEKEEFVESSPTKVFDINPNTGQVYVCDAEAYTY 739
           SPAATVTFMYEP+I+INE++MESL+L+EK  +VESSPTKVFDI+ ++ QV V DAEAYTY
Sbjct: 180 SPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTY 239

Query: 740 DDEVIKKAESMGKPGLVEIHAKEDSFIFTVETTGGIKASQLFLNAIEVLKQKLDAVRLSA 919
           DDEV+KKAE+MGKPGLVEI+AKEDSFIFTVE+TG IKASQL LNAI+VLKQKLDAVRLS 
Sbjct: 240 DDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSE 299

Query: 920 DTVEADEQFGELGAHMRGG 976
           DTVEAD+QFGELGAHMRGG
Sbjct: 300 DTVEADDQFGELGAHMRGG 318


>ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
           gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation
           [Medicago truncatula] gi|355508950|gb|AES90092.1|
           DNA-directed RNA polymerase II subunit RPB3-A [Medicago
           truncatula]
          Length = 318

 Score =  526 bits (1355), Expect = e-147
 Identities = 262/319 (82%), Positives = 292/319 (91%)
 Frame = +2

Query: 20  MEGVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSS 199
           MEG SY R P++KIR ++DD+MKFELR+TDAS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 200 VLNDEFIAHRLGLIPLKSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCINDQTLDV 379
           VLNDEFIAHRLGLIPL SERAMAMRFSRDCDACDGDGQCEYCSVEFHLR KCI DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120

Query: 380 TSKDLYSSDHTVVPVDFSDSSAGIDSSDNRGIIIVKLRRGQELILRAIARKGIGKDHAKW 559
           +SKDL SSDHTV PVD     A I+S D RGIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121 SSKDLISSDHTVTPVDVPGGDASIES-DGRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 179

Query: 560 SPAATVTFMYEPDIYINEEMMESLSLKEKEEFVESSPTKVFDINPNTGQVYVCDAEAYTY 739
           SPAATVTFMYEPDI+INE++MESL+L+EK+E+V+SSPT+VFDI+P T QV V D EAY+Y
Sbjct: 180 SPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVMVVDPEAYSY 239

Query: 740 DDEVIKKAESMGKPGLVEIHAKEDSFIFTVETTGGIKASQLFLNAIEVLKQKLDAVRLSA 919
           DDEVIKKAE+MGKPGL+EI AK+DSFIFTVE+TG +KASQL LN+IE+LKQKLDAVRLS 
Sbjct: 240 DDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLSE 299

Query: 920 DTVEADEQFGELGAHMRGG 976
           DTVEAD+QFGELGAHMRGG
Sbjct: 300 DTVEADDQFGELGAHMRGG 318


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Glycine max]
          Length = 319

 Score =  525 bits (1353), Expect = e-147
 Identities = 263/317 (82%), Positives = 294/317 (92%)
 Frame = +2

Query: 26  GVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 205
           GVSY R P++KIR ++DD+ KFELR+TDASIANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 4   GVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 63

Query: 206 NDEFIAHRLGLIPLKSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCINDQTLDVTS 385
           NDEFIAHRLGLIPL SERAM+MRFSRDCDACDGDGQCE+CSVEFHLR KC+ DQTLDVTS
Sbjct: 64  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 123

Query: 386 KDLYSSDHTVVPVDFSDSSAGIDSSDNRGIIIVKLRRGQELILRAIARKGIGKDHAKWSP 565
           KDLYSSD TV PVDFSD SA  DS +NRGIIIVKLRRGQEL LRAIARKGIGKDHAKWSP
Sbjct: 124 KDLYSSDPTVSPVDFSDPSA-TDSDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSP 182

Query: 566 AATVTFMYEPDIYINEEMMESLSLKEKEEFVESSPTKVFDINPNTGQVYVCDAEAYTYDD 745
           AATVTFMYEP+I+INE++ME+L+L+EK E+V+SSPT+VF+I+P T QV V DAEAYTYDD
Sbjct: 183 AATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDD 242

Query: 746 EVIKKAESMGKPGLVEIHAKEDSFIFTVETTGGIKASQLFLNAIEVLKQKLDAVRLSADT 925
           EV+KKAE+MGKPGLVEI A++DSFIFTVE+TG +KASQL LNAIE+LKQKLDAVRLS DT
Sbjct: 243 EVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDT 302

Query: 926 VEADEQFGELGAHMRGG 976
           VEAD+QFGELGAHMRGG
Sbjct: 303 VEADDQFGELGAHMRGG 319