BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00010930
         (987 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285578.1| PREDICTED: DNA-directed RNA polymerase II su...   210   5e-52
ref|XP_002313254.1| predicted protein [Populus trichocarpa] gi|1...   208   1e-51
ref|XP_004149719.1| PREDICTED: DNA-directed RNA polymerase II su...   206   5e-51
ref|XP_002877842.1| ATRPB13.6 [Arabidopsis lyrata subsp. lyrata]...   204   3e-50
ref|NP_190777.1| DNA-directed RNA polymerase II subunit RPB11 [A...   203   6e-50

>ref|XP_002285578.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Vitis
           vinifera] gi|296082163|emb|CBI21168.3| unnamed protein
           product [Vitis vinifera]
          Length = 116

 Score =  210 bits (534), Expect = 5e-52
 Identities = 105/120 (87%), Positives = 109/120 (90%)
 Frame = +2

Query: 236 MNAPDRYERFVVPEGVSKVSYERDTKIINAATFTVEREDHTIGNIVRMQLHRDENVLFAG 415
           MNAPDRYERFVVPEG  KVSYERDTKIINAA+FTVEREDHTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAG 60

Query: 416 YKLPHPLQYKILFRIQTTSQSSPMQAYNQAINDLDKELDHLKNEFEVELAKQPANQLREY 595
           YKLPHPLQYKI+ RI TTSQSSPMQAYNQAINDLDKELD+LKN FEVELAK      REY
Sbjct: 61  YKLPHPLQYKIIIRIHTTSQSSPMQAYNQAINDLDKELDYLKNAFEVELAKHS----REY 116


>ref|XP_002313254.1| predicted protein [Populus trichocarpa] gi|118484276|gb|ABK94017.1|
           unknown [Populus trichocarpa]
           gi|222849662|gb|EEE87209.1| predicted protein [Populus
           trichocarpa]
          Length = 116

 Score =  208 bits (530), Expect = 1e-51
 Identities = 100/113 (88%), Positives = 106/113 (93%)
 Frame = +2

Query: 236 MNAPDRYERFVVPEGVSKVSYERDTKIINAATFTVEREDHTIGNIVRMQLHRDENVLFAG 415
           MNAPDRYERFVVPEG  KVSYERDTKIINAA+FTVEREDHTIGNI+RMQLHRD+NVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 416 YKLPHPLQYKILFRIQTTSQSSPMQAYNQAINDLDKELDHLKNEFEVELAKQP 574
           YKLPHPL+YKI+ RI TTSQSSPMQAYNQAINDLDKELDHLKN FE ELA +P
Sbjct: 61  YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAELANRP 113


>ref|XP_004149719.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
           [Cucumis sativus] gi|449516703|ref|XP_004165386.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB11-like [Cucumis sativus]
          Length = 116

 Score =  206 bits (525), Expect = 5e-51
 Identities = 99/111 (89%), Positives = 104/111 (93%)
 Frame = +2

Query: 236 MNAPDRYERFVVPEGVSKVSYERDTKIINAATFTVEREDHTIGNIVRMQLHRDENVLFAG 415
           MNAPDRYERFVVPEG  KVSYERDTKIINAA+FT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 416 YKLPHPLQYKILFRIQTTSQSSPMQAYNQAINDLDKELDHLKNEFEVELAK 568
           YKLPHPLQYKI+ RI TTSQSSPMQAYNQAINDLDKELDHLKN FE E AK
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAK 111


>ref|XP_002877842.1| ATRPB13.6 [Arabidopsis lyrata subsp. lyrata]
           gi|297323680|gb|EFH54101.1| ATRPB13.6 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 116

 Score =  204 bits (519), Expect = 3e-50
 Identities = 97/111 (87%), Positives = 106/111 (95%)
 Frame = +2

Query: 236 MNAPDRYERFVVPEGVSKVSYERDTKIINAATFTVEREDHTIGNIVRMQLHRDENVLFAG 415
           MNAPDRYERFVVPEG  KVSY+RDTKIINAA+FT+EREDHTIGNIVRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYDRDTKIINAASFTIEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 416 YKLPHPLQYKILFRIQTTSQSSPMQAYNQAINDLDKELDHLKNEFEVELAK 568
           Y+LPHPL+YKI+ RI TTSQSSPMQAYNQAINDLDKELD+LKN+FE E+AK
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAK 111


>ref|NP_190777.1| DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis thaliana]
           gi|3219858|sp|Q38859.1|RPB11_ARATH RecName:
           Full=DNA-directed RNA polymerase II subunit RPB11;
           Short=RNA polymerase II subunit B11; AltName:
           Full=DNA-directed RNA polymerase II 13.6 kDa
           polypeptide; AltName: Full=DNA-directed RNA polymerase
           II subunit J gi|881501|gb|AAB02849.1| RNA polymerase II
           13.6 kDa subunit [Arabidopsis thaliana]
           gi|4678938|emb|CAB41329.1| DNA-directed RNA polymerase
           II 13.6K chain [Arabidopsis thaliana]
           gi|29029080|gb|AAO64919.1| At3g52090 [Arabidopsis
           thaliana] gi|332645368|gb|AEE78889.1| DNA-directed RNA
           polymerase II subunit RPB11 [Arabidopsis thaliana]
          Length = 116

 Score =  203 bits (516), Expect = 6e-50
 Identities = 97/111 (87%), Positives = 106/111 (95%)
 Frame = +2

Query: 236 MNAPDRYERFVVPEGVSKVSYERDTKIINAATFTVEREDHTIGNIVRMQLHRDENVLFAG 415
           MNAP+RYERFVVPEG  KVSY+RDTKIINAA+FTVEREDHTIGNIVRMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 416 YKLPHPLQYKILFRIQTTSQSSPMQAYNQAINDLDKELDHLKNEFEVELAK 568
           Y+LPHPL+YKI+ RI TTSQSSPMQAYNQAINDLDKELD+LKN+FE E+AK
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAK 111