BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00010200
         (1596 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   351   4e-94
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              285   3e-74
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...   285   3e-74
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   272   2e-70
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...   272   2e-70

>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  351 bits (900), Expect = 4e-94
 Identities = 216/500 (43%), Positives = 279/500 (55%), Gaps = 16/500 (3%)
 Frame = +2

Query: 2    EILMTASDIIKTPILTCPFLEWRXXXXXXXXXXXXXXXXXADLLENMEVQI---SIEHHK 172
            EILMTAS  IKTPI+TCP  E R                 AD++E+MEV +   +I+   
Sbjct: 1190 EILMTASIDIKTPIMTCPLQEGRTNEDADHLADKLRKVTVADIVESMEVSVVPFAIQDGG 1249

Query: 173  VARIYKLKMKLKDTEF------VSLEDTQETLQTVFLRELEDAIENHVILLSRVNGIKNI 334
            V RIYKLKMKL           +S+ED +ETL+ VFLRELEDAI+NH+ LLSR++GIK+ 
Sbjct: 1250 VCRIYKLKMKLYRPAHYPQYANISVEDWEETLEVVFLRELEDAIQNHMFLLSRISGIKDF 1309

Query: 335  IXXXXXXXXXXXXXXXXGATTRKAXXXXXXXXXXXXXXXXXXV--QKRKLQATXXXXXXX 508
            +                G  + +                   +  QKRKLQAT       
Sbjct: 1310 LPESRSRASGEADEDVAGDMSHREERDDDNDDDDGERADDLGLDAQKRKLQATDEMDYDD 1369

Query: 509  XXXXXXXXXXXXXXREKG--KSDVD---HHVDIENSKXXXXXXXXXXXXXXNAQNVDEVX 673
                           E+   +S++D   +  +I N                 ++   +  
Sbjct: 1370 GFEEELNEGESTASEEESGFESEIDQGDNETEISNDVMLDNEASETLPLRKPSKPKSKKK 1429

Query: 674  XXXXXXXXXXXXXXXIRIEMPSSDFSGKKIRRAVYMEVKGLSFHVHFRFTSEPHLLLAQI 853
                            + +        K   RA+++E + + F VHF+FT+EPH+LLA+I
Sbjct: 1430 AAESPSHGEKSKDKKKKPKAKRKSRISKDFDRAIFVEARKMHFEVHFKFTNEPHILLAEI 1489

Query: 854  AQKTAKKVYIKRSGKISQCRMVQYDPDEKTVIWDDNIKPKRGSQKSDADDATLYWAVKAS 1033
            AQKTAKKVYI+  GKI QCR+   D  E  VI+      +R   K D  +     A+ A+
Sbjct: 1490 AQKTAKKVYIQNPGKIEQCRVT--DCKESQVIYYGKDPKERVDLKPDVKEKVP--ALHAT 1545

Query: 1034 GVDFKSLWEMADDLDLSRLYSNNITSVLNTYGVEAARATLIREVKQVFDIYGVKIDYRHL 1213
            GVDF + W+M D LD+  +YSNNI ++L TYGVEAAR T+IRE+  VF  YG+ +  RHL
Sbjct: 1546 GVDFNTFWKMQDHLDVRYIYSNNIHAMLKTYGVEAARETIIREINHVFKSYGIAVSNRHL 1605

Query: 1214 SLIADYMTHTGGYQPMSRHGSISESISPFLKMSFETASKFIVEAASHGLTDNLDTPSSRI 1393
            SLIAD+MTHTGGY+PMSR G I+ESISPF KMSFETASKFIVEAA HG  DNL+TPS+RI
Sbjct: 1606 SLIADFMTHTGGYRPMSRMGGIAESISPFSKMSFETASKFIVEAALHGEIDNLETPSARI 1665

Query: 1394 CLGLPVKMGTGCFDLMQKLD 1453
            CLGLPVKMGTG FDLMQKL+
Sbjct: 1666 CLGLPVKMGTGSFDLMQKLE 1685


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  285 bits (728), Expect = 3e-74
 Identities = 139/233 (59%), Positives = 184/233 (78%)
 Frame = +2

Query: 755  KKIRRAVYMEVKGLSFHVHFRFTSEPHLLLAQIAQKTAKKVYIKRSGKISQCRMVQYDPD 934
            K   RA+ ++ KG  F VHFRFT+EPH+LLAQIAQK A KVYI+ SGKI  C+++  + D
Sbjct: 1440 KDFDRAILVKAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKD 1499

Query: 935  EKTVIWDDNIKPKRGSQKSDADDATLYWAVKASGVDFKSLWEMADDLDLSRLYSNNITSV 1114
            +  VI+      KR  +    ++     A++ +GVDF + W+M D+LD+  +YSNN+ ++
Sbjct: 1500 Q--VIYYGRDPKKR--ENIPGEEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAM 1555

Query: 1115 LNTYGVEAARATLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGYQPMSRHGSISESIS 1294
            LNT+GVEAARAT+I+EV  VF+ YGVK++ RHLSLIAD+MTH+GGY+PM+RHG I+ES+S
Sbjct: 1556 LNTFGVEAARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVS 1615

Query: 1295 PFLKMSFETASKFIVEAASHGLTDNLDTPSSRICLGLPVKMGTGCFDLMQKLD 1453
            PF KM+FETASKFIVEAASHG+TDNL++ S+RICLGLPVKMGTGCFDLMQK++
Sbjct: 1616 PFSKMTFETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIE 1668



 Score =  102 bits (253), Expect = 4e-19
 Identities = 56/121 (46%), Positives = 77/121 (63%), Gaps = 9/121 (7%)
 Frame = +2

Query: 2    EILMTASDIIKTPILTCPFLEWRXXXXXXXXXXXXXXXXXADLLENMEVQI---SIEHHK 172
            EILMTA++ IKTPI+TCP    R                 AD+ E+MEV I   +++ H+
Sbjct: 1189 EILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQ 1248

Query: 173  VARIYKLKMKLKDTEF------VSLEDTQETLQTVFLRELEDAIENHVILLSRVNGIKNI 334
               IYKLKMKL +         +SLED +ETL+ VF+RELEDAI+NH++LLS+++GIKN 
Sbjct: 1249 TCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNF 1308

Query: 335  I 337
            +
Sbjct: 1309 L 1309


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score =  285 bits (728), Expect = 3e-74
 Identities = 139/233 (59%), Positives = 184/233 (78%)
 Frame = +2

Query: 755  KKIRRAVYMEVKGLSFHVHFRFTSEPHLLLAQIAQKTAKKVYIKRSGKISQCRMVQYDPD 934
            K   RA+ ++ KG  F VHFRFT+EPH+LLAQIAQK A KVYI+ SGKI  C+++  + D
Sbjct: 1511 KDFDRAILVKAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKD 1570

Query: 935  EKTVIWDDNIKPKRGSQKSDADDATLYWAVKASGVDFKSLWEMADDLDLSRLYSNNITSV 1114
            +  VI+      KR  +    ++     A++ +GVDF + W+M D+LD+  +YSNN+ ++
Sbjct: 1571 Q--VIYYGRDPKKR--ENIPGEEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAM 1626

Query: 1115 LNTYGVEAARATLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGYQPMSRHGSISESIS 1294
            LNT+GVEAARAT+I+EV  VF+ YGVK++ RHLSLIAD+MTH+GGY+PM+RHG I+ES+S
Sbjct: 1627 LNTFGVEAARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVS 1686

Query: 1295 PFLKMSFETASKFIVEAASHGLTDNLDTPSSRICLGLPVKMGTGCFDLMQKLD 1453
            PF KM+FETASKFIVEAASHG+TDNL++ S+RICLGLPVKMGTGCFDLMQK++
Sbjct: 1687 PFSKMTFETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIE 1739



 Score =  102 bits (253), Expect = 4e-19
 Identities = 56/121 (46%), Positives = 77/121 (63%), Gaps = 9/121 (7%)
 Frame = +2

Query: 2    EILMTASDIIKTPILTCPFLEWRXXXXXXXXXXXXXXXXXADLLENMEVQI---SIEHHK 172
            EILMTA++ IKTPI+TCP    R                 AD+ E+MEV I   +++ H+
Sbjct: 1260 EILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQ 1319

Query: 173  VARIYKLKMKLKDTEF------VSLEDTQETLQTVFLRELEDAIENHVILLSRVNGIKNI 334
               IYKLKMKL +         +SLED +ETL+ VF+RELEDAI+NH++LLS+++GIKN 
Sbjct: 1320 TCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNF 1379

Query: 335  I 337
            +
Sbjct: 1380 L 1380


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score =  272 bits (695), Expect = 2e-70
 Identities = 132/238 (55%), Positives = 182/238 (76%)
 Frame = +2

Query: 740  SDFSGKKIRRAVYMEVKGLSFHVHFRFTSEPHLLLAQIAQKTAKKVYIKRSGKISQCRMV 919
            S+   K+  R++++E K   F VHF+FT+EPH LL+QI Q+ A+KV I+RSGKI QC+ +
Sbjct: 1418 SELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQI 1477

Query: 920  QYDPDEKTVIWDDNIKPKRGSQKSDADDATLYWAVKASGVDFKSLWEMADDLDLSRLYSN 1099
                + + +   +N+K ++  +  + +      A++ SGVDFK+LWEM D+LD+  +YSN
Sbjct: 1478 TCK-EGQVIYHGNNLKERKNLKPEEKEKIP---ALQTSGVDFKTLWEMQDELDVRYIYSN 1533

Query: 1100 NITSVLNTYGVEAARATLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGYQPMSRHGSI 1279
            +I ++L TYGVEAARAT+IRE++ +F  YG+ ++ RHLSL+ADYMTH+GGY+PMSR G I
Sbjct: 1534 DIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGI 1593

Query: 1280 SESISPFLKMSFETASKFIVEAASHGLTDNLDTPSSRICLGLPVKMGTGCFDLMQKLD 1453
            S+SISPF +M+FETA KFIV+AA HG  DNL+TPSSRICLGLPVKMGTG FDLMQK++
Sbjct: 1594 SDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQKIE 1651



 Score = 79.3 bits (194), Expect = 3e-12
 Identities = 48/121 (39%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
 Frame = +2

Query: 2    EILMTASDIIKTPILTCPFLEWRXXXXXXXXXXXXXXXXXADLLENMEVQI---SIEHHK 172
            EILMTAS  IKTPI+TCP  E                   AD++E+M V +   S    +
Sbjct: 1171 EILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKRE 1230

Query: 173  VARIYKLKMKLKDTE------FVSLEDTQETLQTVFLRELEDAIENHVILLSRVNGIKNI 334
            +  IYKL++     E       +S ED + TL+TVFL ELE  IE  ++LLS++NGIK  
Sbjct: 1231 ICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKXF 1290

Query: 335  I 337
            +
Sbjct: 1291 V 1291


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score =  272 bits (695), Expect = 2e-70
 Identities = 132/238 (55%), Positives = 182/238 (76%)
 Frame = +2

Query: 740  SDFSGKKIRRAVYMEVKGLSFHVHFRFTSEPHLLLAQIAQKTAKKVYIKRSGKISQCRMV 919
            S+   K+  R++++E K   F VHF+FT+EPH LL+QI Q+ A+KV I+RSGKI QC+ +
Sbjct: 1416 SELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQI 1475

Query: 920  QYDPDEKTVIWDDNIKPKRGSQKSDADDATLYWAVKASGVDFKSLWEMADDLDLSRLYSN 1099
                + + +   +N+K ++  +  + +      A++ SGVDFK+LWEM D+LD+  +YSN
Sbjct: 1476 TCK-EGQVIYHGNNLKERKNLKPEEKEKIP---ALQTSGVDFKTLWEMQDELDVRYIYSN 1531

Query: 1100 NITSVLNTYGVEAARATLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGYQPMSRHGSI 1279
            +I ++L TYGVEAARAT+IRE++ +F  YG+ ++ RHLSL+ADYMTH+GGY+PMSR G I
Sbjct: 1532 DIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGI 1591

Query: 1280 SESISPFLKMSFETASKFIVEAASHGLTDNLDTPSSRICLGLPVKMGTGCFDLMQKLD 1453
            S+SISPF +M+FETA KFIV+AA HG  DNL+TPSSRICLGLPVKMGTG FDLMQK++
Sbjct: 1592 SDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQKIE 1649



 Score = 82.0 bits (201), Expect = 4e-13
 Identities = 49/121 (40%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
 Frame = +2

Query: 2    EILMTASDIIKTPILTCPFLEWRXXXXXXXXXXXXXXXXXADLLENMEVQI---SIEHHK 172
            EILMTAS  IKTPI+TCP  E                   AD++E+M V +   S    +
Sbjct: 1168 EILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKRE 1227

Query: 173  VARIYKLKMKLKDTE------FVSLEDTQETLQTVFLRELEDAIENHVILLSRVNGIKNI 334
            +  IYKL++     E       +S ED + TL+TVFL ELE  IE  ++LLS++NGIKN 
Sbjct: 1228 ICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNF 1287

Query: 335  I 337
            +
Sbjct: 1288 V 1288