BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00005889
         (535 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285578.1| PREDICTED: DNA-directed RNA polymerase II su...   184   9e-45
ref|XP_004149719.1| PREDICTED: DNA-directed RNA polymerase II su...   179   2e-43
emb|CAN70445.1| hypothetical protein VITISV_015574 [Vitis vinifera]   179   3e-43
ref|XP_002313254.1| predicted protein [Populus trichocarpa] gi|1...   178   4e-43
ref|NP_190777.1| DNA-directed RNA polymerase II subunit RPB11 [A...   177   7e-43

>ref|XP_002285578.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Vitis
           vinifera] gi|296082163|emb|CBI21168.3| unnamed protein
           product [Vitis vinifera]
          Length = 116

 Score =  184 bits (466), Expect = 9e-45
 Identities = 90/100 (90%), Positives = 94/100 (94%)
 Frame = -3

Query: 533 EGVSKVSYERDTKIINAATFTVEREDHTIGNIVRMQLHRDENVLFAGYKLPHPLQYKILF 354
           EG  KVSYERDTKIINAA+FTVEREDHTIGNI+RMQLHRDENVLFAGYKLPHPLQYKI+ 
Sbjct: 14  EGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIII 73

Query: 353 RIQTTSQSSPMQAYNQAINDLDKELDHLKNEFEVELAKQS 234
           RI TTSQSSPMQAYNQAINDLDKELD+LKN FEVELAK S
Sbjct: 74  RIHTTSQSSPMQAYNQAINDLDKELDYLKNAFEVELAKHS 113


>ref|XP_004149719.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
           [Cucumis sativus] gi|449516703|ref|XP_004165386.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB11-like [Cucumis sativus]
          Length = 116

 Score =  179 bits (455), Expect = 2e-43
 Identities = 87/100 (87%), Positives = 92/100 (92%)
 Frame = -3

Query: 533 EGVSKVSYERDTKIINAATFTVEREDHTIGNIVRMQLHRDENVLFAGYKLPHPLQYKILF 354
           EG  KVSYERDTKIINAA+FT+ERE+HTIGNI+RMQLHRDENVLFAGYKLPHPLQYKI+ 
Sbjct: 14  EGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIV 73

Query: 353 RIQTTSQSSPMQAYNQAINDLDKELDHLKNEFEVELAKQS 234
           RI TTSQSSPMQAYNQAINDLDKELDHLKN FE E AK S
Sbjct: 74  RIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFS 113


>emb|CAN70445.1| hypothetical protein VITISV_015574 [Vitis vinifera]
          Length = 129

 Score =  179 bits (453), Expect = 3e-43
 Identities = 88/98 (89%), Positives = 93/98 (94%)
 Frame = -3

Query: 527 VSKVSYERDTKIINAATFTVEREDHTIGNIVRMQLHRDENVLFAGYKLPHPLQYKILFRI 348
           +S VSYERDTKIINAA+FTVEREDHTIGNI+RMQLHRDENVLFAGYKLPHPLQYKI+ RI
Sbjct: 29  LSLVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIIRI 88

Query: 347 QTTSQSSPMQAYNQAINDLDKELDHLKNEFEVELAKQS 234
            TTSQSSPMQAYNQAINDLDKELD+LKN FEVELAK S
Sbjct: 89  HTTSQSSPMQAYNQAINDLDKELDYLKNAFEVELAKHS 126


>ref|XP_002313254.1| predicted protein [Populus trichocarpa] gi|118484276|gb|ABK94017.1|
           unknown [Populus trichocarpa]
           gi|222849662|gb|EEE87209.1| predicted protein [Populus
           trichocarpa]
          Length = 116

 Score =  178 bits (452), Expect = 4e-43
 Identities = 86/99 (86%), Positives = 92/99 (92%)
 Frame = -3

Query: 533 EGVSKVSYERDTKIINAATFTVEREDHTIGNIVRMQLHRDENVLFAGYKLPHPLQYKILF 354
           EG  KVSYERDTKIINAA+FTVEREDHTIGNI+RMQLHRD+NVLFAGYKLPHPL+YKI+ 
Sbjct: 14  EGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDDNVLFAGYKLPHPLKYKIIV 73

Query: 353 RIQTTSQSSPMQAYNQAINDLDKELDHLKNEFEVELAKQ 237
           RI TTSQSSPMQAYNQAINDLDKELDHLKN FE ELA +
Sbjct: 74  RIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAELANR 112


>ref|NP_190777.1| DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis thaliana]
           gi|3219858|sp|Q38859.1|RPB11_ARATH RecName:
           Full=DNA-directed RNA polymerase II subunit RPB11;
           Short=RNA polymerase II subunit B11; AltName:
           Full=DNA-directed RNA polymerase II 13.6 kDa
           polypeptide; AltName: Full=DNA-directed RNA polymerase
           II subunit J gi|881501|gb|AAB02849.1| RNA polymerase II
           13.6 kDa subunit [Arabidopsis thaliana]
           gi|4678938|emb|CAB41329.1| DNA-directed RNA polymerase
           II 13.6K chain [Arabidopsis thaliana]
           gi|29029080|gb|AAO64919.1| At3g52090 [Arabidopsis
           thaliana] gi|332645368|gb|AEE78889.1| DNA-directed RNA
           polymerase II subunit RPB11 [Arabidopsis thaliana]
          Length = 116

 Score =  177 bits (450), Expect = 7e-43
 Identities = 86/100 (86%), Positives = 94/100 (94%)
 Frame = -3

Query: 533 EGVSKVSYERDTKIINAATFTVEREDHTIGNIVRMQLHRDENVLFAGYKLPHPLQYKILF 354
           EG  KVSY+RDTKIINAA+FTVEREDHTIGNIVRMQLHRDENVLFAGY+LPHPL+YKI+ 
Sbjct: 14  EGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIV 73

Query: 353 RIQTTSQSSPMQAYNQAINDLDKELDHLKNEFEVELAKQS 234
           RI TTSQSSPMQAYNQAINDLDKELD+LKN+FE E+AK S
Sbjct: 74  RIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFS 113