BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00004370
         (1312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig ...   252   2e-64
pdb|3N1H|A Chain A, Crystal Structure Of Stwhy2 gi|302566180|pdb...   238   2e-60
pdb|3R9Y|A Chain A, Crystal Structure Of Stwhy2 K67a (Form I) gi...   236   1e-59
ref|XP_002888827.1| ATWHY2 [Arabidopsis lyrata subsp. lyrata] gi...   233   8e-59
gb|AAG51881.1|AC016162_2 unknown protein; 79476-81015 [Arabidops...   231   4e-58

>sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig protein WHY2, mitochondrial;
            AltName: Full=Protein WHIRLY 2; Short=StWHY2; Flags:
            Precursor gi|298359665|gb|ADI77438.1| Why2 protein
            [Solanum tuberosum]
          Length = 238

 Score =  252 bits (643), Expect = 2e-64
 Identities = 134/228 (58%), Positives = 158/228 (69%), Gaps = 3/228 (1%)
 Frame = -2

Query: 1176 QFLGKGMANEAANDFKLLRGITTHTGMSTATPKFEPGAG---AKIFAPYSIYKGKAALSA 1006
            Q L K +  E          I T  G ST        AG    ++FAPYS++KGKAALSA
Sbjct: 13   QLLHKKLPGECVKGSIWQHAINTFAGFSTVRQNVVADAGKREGRVFAPYSVFKGKAALSA 72

Query: 1005 YPLLPTYNKLESGDYRVDRCGVIMLTFWPSIGERKYDWDKRQKFALSATEVGSLISLGSK 826
             P LPT+N+L+SG  +++R GVIMLTFWPS+GERKYDW+KRQ FALSATEVGSLIS+G++
Sbjct: 73   EPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLISMGTR 132

Query: 825  DSCEFFHDPSMLSSNAGQVRKSLSIRAHADGSGYFXXXXXXXXXXXXNDRFVVPVSTAEF 646
            DS EFFHDPSMLSSNAGQVRKSLSI+ +ADGSGYF            NDRF VPV+TAEF
Sbjct: 133  DSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEF 192

Query: 645  AVMRTAFSFALPHIMGWEQSIYKLPLRTNQSSPPPSAVSNPQGSEWDR 502
            AVMRTAFSFALPHIMGW++   +     +QS  P   V     +EWDR
Sbjct: 193  AVMRTAFSFALPHIMGWDRFTNRPSESISQS--PSKVVPQLMEAEWDR 238


>pdb|3N1H|A Chain A, Crystal Structure Of Stwhy2 gi|302566180|pdb|3N1I|A Chain A,
            Crystal Structure Of A Stwhy2-Ere32 Complex
            gi|302566182|pdb|3N1J|A Chain A, Crystal Structure Of A
            Stwhy2-Dt32 Complex gi|302566184|pdb|3N1K|A Chain A,
            Crystal Structure Of A Stwhy2-Cere32 Complex
            gi|302566186|pdb|3N1L|A Chain A, Crystal Structure Of A
            Stwhy2-Rcere32 Complex
          Length = 178

 Score =  238 bits (608), Expect = 2e-60
 Identities = 115/156 (73%), Positives = 135/156 (86%)
 Frame = -2

Query: 1056 KIFAPYSIYKGKAALSAYPLLPTYNKLESGDYRVDRCGVIMLTFWPSIGERKYDWDKRQK 877
            ++FAPYS++KGKAALSA P LPT+N+L+SG  +++R GVIMLTFWPS+GERKYDW+KRQ 
Sbjct: 10   RVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQL 69

Query: 876  FALSATEVGSLISLGSKDSCEFFHDPSMLSSNAGQVRKSLSIRAHADGSGYFXXXXXXXX 697
            FALSATEVGSLIS+G++DS EFFHDPSMLSSNAGQVRKSLSI+ +ADGSGYF        
Sbjct: 70   FALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNN 129

Query: 696  XXXXNDRFVVPVSTAEFAVMRTAFSFALPHIMGWEQ 589
                NDRF VPV+TAEFAVMRTAFSFALPHIMGW++
Sbjct: 130  NLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDR 165


>pdb|3R9Y|A Chain A, Crystal Structure Of Stwhy2 K67a (Form I)
            gi|347948613|pdb|3R9Z|A Chain A, Crystal Structure Of
            Stwhy2 K67a (Form Ii) gi|347948614|pdb|3RA0|A Chain A,
            Crystal Structure Of A Stwhy2 K67a-Dt32 Complex
          Length = 178

 Score =  236 bits (602), Expect = 1e-59
 Identities = 114/156 (73%), Positives = 134/156 (85%)
 Frame = -2

Query: 1056 KIFAPYSIYKGKAALSAYPLLPTYNKLESGDYRVDRCGVIMLTFWPSIGERKYDWDKRQK 877
            ++FAPYS++KG AALSA P LPT+N+L+SG  +++R GVIMLTFWPS+GERKYDW+KRQ 
Sbjct: 10   RVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQL 69

Query: 876  FALSATEVGSLISLGSKDSCEFFHDPSMLSSNAGQVRKSLSIRAHADGSGYFXXXXXXXX 697
            FALSATEVGSLIS+G++DS EFFHDPSMLSSNAGQVRKSLSI+ +ADGSGYF        
Sbjct: 70   FALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNN 129

Query: 696  XXXXNDRFVVPVSTAEFAVMRTAFSFALPHIMGWEQ 589
                NDRF VPV+TAEFAVMRTAFSFALPHIMGW++
Sbjct: 130  NLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDR 165


>ref|XP_002888827.1| ATWHY2 [Arabidopsis lyrata subsp. lyrata] gi|297334668|gb|EFH65086.1|
            ATWHY2 [Arabidopsis lyrata subsp. lyrata]
          Length = 242

 Score =  233 bits (594), Expect = 8e-59
 Identities = 126/217 (58%), Positives = 154/217 (70%), Gaps = 9/217 (4%)
 Frame = -2

Query: 1125 LRGITTHTGMSTATPKFE----PGAGAKIFAPYSIYKGKAALSAYPLLPTYNKLESGDYR 958
            LRG  + +  ST    F     P    ++FAPYSI+KGKAALS  P+LP++ +++SG+ R
Sbjct: 30   LRGFASWSSSSTPGRGFSGKDAPKPSGRLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLR 89

Query: 957  VDRCGVIMLTFWPSIGERKYDWDKRQKFALSATEVGSLISLGSKDSCEFFHDPSMLSSNA 778
            +DR G +M+TF P+IGERKYDW+K+QKFALS TEVGSLIS+GSKDS EFFHDPSM SSNA
Sbjct: 90   IDRRGSLMMTFMPAIGERKYDWEKKQKFALSPTEVGSLISMGSKDSSEFFHDPSMKSSNA 149

Query: 777  GQVRKSLSIRAHADGSGYFXXXXXXXXXXXXNDRFVVPVSTAEFAVMRTAFSFALPHIMG 598
            GQVRKSLSI+ HADGSGYF            ND FVVPV+ AEFAVM+TAFSFALPHIMG
Sbjct: 150  GQVRKSLSIKPHADGSGYFISLSVNNGILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMG 209

Query: 597  WEQSIYKLPLRTNQSSPPPSAV----SNPQ-GSEWDR 502
            W     +L  + N  + PP  V    ++PQ   EWD+
Sbjct: 210  WN----RLTGQGNTEALPPRNVTHLKTDPQLELEWDK 242


>gb|AAG51881.1|AC016162_2 unknown protein; 79476-81015 [Arabidopsis thaliana]
          Length = 237

 Score =  231 bits (588), Expect = 4e-58
 Identities = 129/235 (54%), Positives = 163/235 (69%), Gaps = 12/235 (5%)
 Frame = -2

Query: 1170 LGKGMANEAANDFKL--LRGITTHTGMSTATPKFEPGAGA-----KIFAPYSIYKGKAAL 1012
            L + + +++ + F+   LRG  + +  ST    F PG  A     ++FAPYSI+KGKAAL
Sbjct: 8    LSRSLCDQSKSLFEASTLRGFASWSNSSTPGRGF-PGKDAAKPSGRLFAPYSIFKGKAAL 66

Query: 1011 SAYPLLPTYNKLESGDYRVDRCGVIMLTFWPSIGERKYDWDKRQKFALSATEVGSLISLG 832
            S  P+LP++ +++SG+ R+DR G +M+TF P+IGERKYDW+K+QKFALS TEVGSLIS+G
Sbjct: 67   SVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGERKYDWEKKQKFALSPTEVGSLISMG 126

Query: 831  SKDSCEFFHDPSMLSSNAGQVRKSLSIRAHADGSGYFXXXXXXXXXXXXNDRFVVPVSTA 652
            SKDS EFFHDPSM SSNAGQVRKSLS++ HADGSGYF            ND FVVPV+ A
Sbjct: 127  SKDSSEFFHDPSMKSSNAGQVRKSLSVKPHADGSGYFISLSVNNSILKTNDYFVVPVTKA 186

Query: 651  EFAVMRTAFSFALPHIMGWEQSIYKLPLRTNQSSPPPSAVSN----PQ-GSEWDR 502
            EFAVM+TAFSFALPHIMGW     +L    N  + P   VS+    PQ   EWD+
Sbjct: 187  EFAVMKTAFSFALPHIMGWN----RLTGHVNTEALPSRNVSHLKTEPQLELEWDK 237