BLASTX nr result
ID: Scutellaria24_contig00003466
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Scutellaria24_contig00003466
(1268 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P19682.1|ROC3_NICSY RecName: Full=28 kDa ribonucleoprotein, c... 278 3e-72
sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, c... 272 2e-70
ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop... 267 5e-69
emb|CBI14910.3| unnamed protein product [Vitis vinifera] 266 8e-69
ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop... 262 1e-67
>sp|P19682.1|ROC3_NICSY RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP;
Flags: Precursor gi|100388|pir||S12109 ribonucleoprotein,
28K, precursor - common tobacco gi|19750|emb|CAA37880.1|
unnamed protein product [Nicotiana sylvestris]
Length = 276
Score = 278 bits (710), Expect = 3e-72
Identities = 156/297 (52%), Positives = 196/297 (65%), Gaps = 2/297 (0%)
Frame = -1
Query: 1157 MATNGCLISSPSLFTASKISSSYPSFSVPFKTINFQLSCKKITSNSLPVSFPLKRKETLL 978
MATNGCLIS P FT +K SSYP S K I+ S+SLP L ++ T
Sbjct: 1 MATNGCLISLPPFFTTTKSISSYPFLSTQLKPISL--------SSSLPTLLSLNKRTTQF 52
Query: 977 RFYVVAAQEENSPVILEEREEDEQGFGVSNDWEESEG-AGE-DSYVEPPEGAKVFVGNLP 804
+V E+++ ++L+++E+ D+ G AGE + Y EP E AK+FVGNLP
Sbjct: 53 PTFVSVLSEDDNTLVLDDQEQ-------GGDFPSFVGEAGETEEYQEPSEDAKLFVGNLP 105
Query: 803 YDVDSERLAMLFQNAGVVEAAEVIYDRDTNQSRGFGFVTMSGEEEAQKAVEMFQSYDLGG 624
YD+DSE LA LFQ AGVVE AEVIY+R+T++SRGFGFVTMS EEA KAVE++ YDL G
Sbjct: 106 YDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNG 165
Query: 623 RVLFANIAXXXXXXXXXXXXXXRVQRGSGASNKLYVGNLSWNVDSQRLEQVFSEHGRVVS 444
R+L N A R + ++YVGN+ W++D RLEQVFSEHG+VVS
Sbjct: 166 RLLTVNKAAPRGSRPER------APRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVS 219
Query: 443 ARVVSDMESGRSRGFGFVEMSSESEMNDAIANLDGQSLDGRAIKVNTATERPRHSRF 273
ARVV D ESGRSRGFGFV MSSE+EM++AIANLDGQ+LDGR I+VN A ERPR + +
Sbjct: 220 ARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRNTY 276
>sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor gi|19741|emb|CAA40364.1| 31kD chloroplast
ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| unnamed protein product
[Nicotiana sylvestris]
Length = 315
Score = 272 bits (695), Expect = 2e-70
Identities = 168/333 (50%), Positives = 204/333 (61%), Gaps = 25/333 (7%)
Frame = -1
Query: 1196 MSFVAKTVLKPMSMATNGCLISSPSLFTASKISSS--YPSFSVPFKTINF-QLSCKKITS 1026
MS K ++KP SMATN CLIS P LF + S S YP S K I LSC
Sbjct: 1 MSCATKPIIKPSSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKLLHLSC----- 55
Query: 1025 NSLPVSFPLKRKETLLRFYVVAAQEENSPVILEER---------------EEDEQGF--- 900
P K+K + V A QEE + +IL+ + E +E+GF
Sbjct: 56 TYSPCILSPKKKTS-----VSALQEEENTLILDGQGQESGDLFNFEPSGEETEEEGFVEA 110
Query: 899 ----GVSNDWEESEGAGEDSYVEPPEGAKVFVGNLPYDVDSERLAMLFQNAGVVEAAEVI 732
G S++ E E E+ + EPPE AK+FVGNLPYDVDSE LA LF+ AGVVE AEVI
Sbjct: 111 VGDAGESDEVEADEE--EEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVI 168
Query: 731 YDRDTNQSRGFGFVTMSGEEEAQKAVEMFQSYDLGGRVLFANIAXXXXXXXXXXXXXXRV 552
Y+RDT+QSRGFGFVTMS EEA+KAVEM+ YD+ GR+L N A
Sbjct: 169 YNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPP----- 223
Query: 551 QRGSGASNKLYVGNLSWNVDSQRLEQVFSEHGRVVSARVVSDMESGRSRGFGFVEMSSES 372
R S ++YVGN+ W +D RLEQ+FSEHG+VVSARVV D E+GRSRGFGFV M+SE+
Sbjct: 224 -RTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEA 282
Query: 371 EMNDAIANLDGQSLDGRAIKVNTATERPRHSRF 273
EM+DAIANLDGQSLDGR I+VN A +R R + F
Sbjct: 283 EMSDAIANLDGQSLDGRTIRVNVAEDRSRRNTF 315
>ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
Length = 327
Score = 267 bits (682), Expect = 5e-69
Identities = 166/336 (49%), Positives = 207/336 (61%), Gaps = 28/336 (8%)
Frame = -1
Query: 1196 MSFVAKTVLKPMSMATNGCLISSPSLFTASKISSSYPSFSVPFKTINFQLSCKKITSNSL 1017
MS +LKP S+ NG IS P++F+ S P P K I LSC + + S
Sbjct: 1 MSSATHHLLKPFSIP-NGSPISLPTIFSTKTPHSYLPI--PPHKPIKLLLSCSQSSLFSP 57
Query: 1016 PVSFPLKRKETLLRFYVV-----AAQEENSPVILEEREEDEQGF---------GVSNDWE 879
+ K + + +V A QEE++ VI+EE +E++ + ++DWE
Sbjct: 58 SLFLKSKTLSSSVVTFVAQTSDWAQQEEDNTVIIEEEQEEKVTWENEEVEGPDAQASDWE 117
Query: 878 -ESEGA-------------GEDSYVEPPEGAKVFVGNLPYDVDSERLAMLFQNAGVVEAA 741
E EGA GEDSY EPPE AKVFVGNLPYDVDSERLA LF+ AGVVE A
Sbjct: 118 SEGEGAVTEAISDDGVVDDGEDSYSEPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIA 177
Query: 740 EVIYDRDTNQSRGFGFVTMSGEEEAQKAVEMFQSYDLGGRVLFANIAXXXXXXXXXXXXX 561
EVIY+R+T++SRGFGFV+MS EEA+KAV+MF Y+L GR+L N A
Sbjct: 178 EVIYNRETDRSRGFGFVSMSTVEEAEKAVDMFHRYELDGRLLTVNKAAPRGSQPERP--- 234
Query: 560 XRVQRGSGASNKLYVGNLSWNVDSQRLEQVFSEHGRVVSARVVSDMESGRSRGFGFVEMS 381
R + ++YVGNL W+VDS RLEQVFSEHG+VV ARVV D E+GRSRGFGFV MS
Sbjct: 235 ---PRVFEPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMS 291
Query: 380 SESEMNDAIANLDGQSLDGRAIKVNTATERPRHSRF 273
S++E+ DAIA DGQ+LDGR I+VN A ERPR S F
Sbjct: 292 SQTELEDAIAATDGQTLDGRTIRVNVAEERPRRSAF 327
>emb|CBI14910.3| unnamed protein product [Vitis vinifera]
Length = 306
Score = 266 bits (680), Expect = 8e-69
Identities = 162/321 (50%), Positives = 200/321 (62%), Gaps = 13/321 (4%)
Frame = -1
Query: 1196 MSFVAKTVLKPMSMATNGCLISSPSLFTASKISSSYPSFSVPFKTINFQLSCKKITSNSL 1017
MS +LKP S+ NG IS P++F+ S P P K I LSC + + S
Sbjct: 1 MSSATHHLLKPFSIP-NGSPISLPTIFSTKTPHSYLPI--PPHKPIKLLLSCSQSSLFSP 57
Query: 1016 PVSFPLKRKETLLRFYVV-----AAQEENSPVILEEREEDEQGFGVSNDWEESEGA---- 864
+ K + + +V A QEE++ VI+EE +E++ WE E
Sbjct: 58 SLFLKSKTLSSSVVTFVAQTSDWAQQEEDNTVIIEEEQEEKV------TWENEEAISDDG 111
Query: 863 ----GEDSYVEPPEGAKVFVGNLPYDVDSERLAMLFQNAGVVEAAEVIYDRDTNQSRGFG 696
GEDSY EPPE AKVFVGNLPYDVDSERLA LF+ AGVVE AEVIY+R+T++SRGFG
Sbjct: 112 VVDDGEDSYSEPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFG 171
Query: 695 FVTMSGEEEAQKAVEMFQSYDLGGRVLFANIAXXXXXXXXXXXXXXRVQRGSGASNKLYV 516
FV+MS EEA+KAV+MF Y+L GR+L N A R + ++YV
Sbjct: 172 FVSMSTVEEAEKAVDMFHRYELDGRLLTVNKAAPRGSQPERP------PRVFEPAFRMYV 225
Query: 515 GNLSWNVDSQRLEQVFSEHGRVVSARVVSDMESGRSRGFGFVEMSSESEMNDAIANLDGQ 336
GNL W+VDS RLEQVFSEHG+VV ARVV D E+GRSRGFGFV MSS++E+ DAIA DGQ
Sbjct: 226 GNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQ 285
Query: 335 SLDGRAIKVNTATERPRHSRF 273
+LDGR I+VN A ERPR S F
Sbjct: 286 TLDGRTIRVNVAEERPRRSAF 306
>ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 312
Score = 262 bits (670), Expect = 1e-67
Identities = 163/326 (50%), Positives = 199/326 (61%), Gaps = 22/326 (6%)
Frame = -1
Query: 1184 AKTVLKPMSMATNGCLISSPSLFTASKISSSYPSFSVPFKTIN-FQLSCKKITSNSLPVS 1008
+ +LKP SMA + CL S P+ +K + +P S+P K + F LSC + +S VS
Sbjct: 4 SNALLKPFSMAES-CLTSVPTTLFTTK--TPHPLLSLPPKPVRLFHLSC---SCSSSWVS 57
Query: 1007 FPLKRKETLLRFYVVAAQEENSPVILEEREEDEQGFG---------------------VS 891
K T L +V + S +E EE++ G V
Sbjct: 58 LKTKTSPTTLVPFVA----QTSDWAQQEEEEEKGGLTWDSEGGEEIEASGSEEAWEGEVG 113
Query: 890 NDWEESEGAGEDSYVEPPEGAKVFVGNLPYDVDSERLAMLFQNAGVVEAAEVIYDRDTNQ 711
D EESEG+ ED+Y EPPE AK+FVGNLPYD+DSE+LA LF AGVVE AEVIY+R+T+Q
Sbjct: 114 EDGEESEGS-EDTYSEPPEEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQ 172
Query: 710 SRGFGFVTMSGEEEAQKAVEMFQSYDLGGRVLFANIAXXXXXXXXXXXXXXRVQRGSGAS 531
SRGFGF+TMS EEA+KAVEMF YDL GR L N A + S
Sbjct: 173 SRGFGFITMSTVEEAEKAVEMFNRYDLNGRFLTVNKAAPRGSRPERP------PQAFEPS 226
Query: 530 NKLYVGNLSWNVDSQRLEQVFSEHGRVVSARVVSDMESGRSRGFGFVEMSSESEMNDAIA 351
++YVGNL W VD RLEQVFSEHG+VV ARVV D ++ RSRGFGFV MSSE+E+NDAIA
Sbjct: 227 FRIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIA 286
Query: 350 NLDGQSLDGRAIKVNTATERPRHSRF 273
LDGQSLDGRAI+VN A ERPR +
Sbjct: 287 ALDGQSLDGRAIRVNVAEERPRRGSY 312