BLASTX nr result

ID: Scutellaria24_contig00000809 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00000809
         (641 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285171.1| PREDICTED: double-stranded RNA-binding prote...    77   2e-12
emb|CAN80689.1| hypothetical protein VITISV_005501 [Vitis vinifera]    77   2e-12
ref|XP_003538171.1| PREDICTED: double-stranded RNA-binding prote...    67   4e-09
ref|NP_001241242.1| uncharacterized protein LOC100812728 [Glycin...    64   2e-08
ref|XP_003540172.1| PREDICTED: double-stranded RNA-binding prote...    60   3e-07

>ref|XP_002285171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
           vinifera]
          Length = 413

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 53/139 (38%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
 Frame = -2

Query: 634 EIRTMQSPRFPVIGAAPYTPINLCRTPYQGIAPPISIRTXXXXXXXXXXXXXXXXXXXVM 455
           ++R ++  RFP  GA PY PI   RTPY GIAPP++IR                    V+
Sbjct: 279 DVRAVRPQRFPAAGAVPYVPIRQFRTPYHGIAPPVTIRN----AVPVFSAPPSGLPPQVI 334

Query: 454 QPRANQIAPPVRIRQTIPVFSASHGPKANPL-----STSANSEPLKKLLAEADKESAISS 290
           +    +IAPPV +RQ +PVF+A    K +PL       SA S P     + A  E   S+
Sbjct: 335 RAPHMRIAPPVCVRQAVPVFAAPPVRKEDPLVVRKEDPSAASLPSLPTKSPAHVEETGSA 394

Query: 289 TC-DVDETTAIKCLEQLEI 236
           T  D+ E  A+K LEQL+I
Sbjct: 395 TANDLQEFEAVKSLEQLKI 413


>emb|CAN80689.1| hypothetical protein VITISV_005501 [Vitis vinifera]
          Length = 403

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 53/139 (38%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
 Frame = -2

Query: 634 EIRTMQSPRFPVIGAAPYTPINLCRTPYQGIAPPISIRTXXXXXXXXXXXXXXXXXXXVM 455
           ++R ++  RFP  GA PY PI   RTPY GIAPP++IR                    V+
Sbjct: 269 DVRAVRPQRFPAAGAVPYVPIRQFRTPYHGIAPPVTIRN----AVPVFSAPPSGLPPQVI 324

Query: 454 QPRANQIAPPVRIRQTIPVFSASHGPKANPL-----STSANSEPLKKLLAEADKESAISS 290
           +    +IAPPV +RQ +PVF+A    K +PL       SA S P     + A  E   S+
Sbjct: 325 RAPHMRIAPPVCVRQAVPVFAAPPVRKEDPLVVRKEDPSAASLPSLPTKSPAHVEETGSA 384

Query: 289 TC-DVDETTAIKCLEQLEI 236
           T  D+ E  A+K LEQL+I
Sbjct: 385 TANDLQEFEAVKSLEQLKI 403


>ref|XP_003538171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
          Length = 411

 Score = 66.6 bits (161), Expect = 4e-09
 Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
 Frame = -2

Query: 640 SPEIRTMQSPRFPVIGAAPYTPINLCRTPYQGIAPPISIRTXXXXXXXXXXXXXXXXXXX 461
           +P+ R ++ P+FP  GAAPY PI   R P QG+APP++IRT                   
Sbjct: 262 TPDSRGIRRPKFPAAGAAPYVPIRQMR-PCQGMAPPVTIRTAIPVFSPPPPPAAAAVSHQ 320

Query: 460 VMQPRANQIAPPVRIRQTIPVFSASHG----------PKANPLSTSANSEP------LKK 329
           V++    ++APPV IRQ +PVF+A             PK  P++   +  P      L+ 
Sbjct: 321 VLRAPHVRVAPPVTIRQAVPVFAAPPPPVRKDEPVPIPKDEPVAVPKDDSPTISAPSLED 380

Query: 328 LLAEADKESAISSTCDVDETTAIKCLEQLEI 236
            L     E+   +     E   ++ LEQL+I
Sbjct: 381 KLPTKTPETETKTENIPPEPETVQSLEQLKI 411


>ref|NP_001241242.1| uncharacterized protein LOC100812728 [Glycine max]
           gi|255644888|gb|ACU22944.1| unknown [Glycine max]
          Length = 401

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
 Frame = -2

Query: 640 SPEIRTMQSPRFPVIGAAPYTPINLCRTPYQGIAPPISIRTXXXXXXXXXXXXXXXXXXX 461
           +PE R ++ P+FP  GAAPY PI   R P QG+APP++IRT                   
Sbjct: 262 TPESRGIRRPKFPAAGAAPYVPIRQMR-PCQGMAPPVTIRT--AIPVFSPPPAAAAVSHQ 318

Query: 460 VMQPRANQIAPPVRIRQTIPVFSASHGP--KANPLSTSANSEPLKKLLAEADKESAISST 287
           V++    ++APPV IRQ +PVF+    P  K  P+    +  P     +  DK  A +  
Sbjct: 319 VLRAPHVRVAPPVTIRQAVPVFATPPPPIRKDEPVPIPKDEPPTISAPSPEDKLPAKTPE 378

Query: 286 CDV------DETTAIKCLEQLEI 236
            +        +   +K LEQL+I
Sbjct: 379 AETKTENIPPKPDMVKSLEQLKI 401


>ref|XP_003540172.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
          Length = 411

 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 42/140 (30%), Positives = 58/140 (41%), Gaps = 5/140 (3%)
 Frame = -2

Query: 640 SPEIRTMQSPRFPVIGAAPYTPINLCRTPYQGIAPPISIRTXXXXXXXXXXXXXXXXXXX 461
           S E R  +  +F   GAAPY PI   R   Q IAPP++IRT                   
Sbjct: 272 SLESRATRPLKFRAAGAAPYVPIRQMRPSCQRIAPPVTIRTVVPAFATPPCPPPASVPHP 331

Query: 460 VMQPRANQIAPPVRIRQTIPVFSASHGPKANPLSTSANSEPLKKLLAEADKESAISSTCD 281
            ++    ++APPV IRQ +PV++A    K  P +      P      + DK        D
Sbjct: 332 AIRAPPVRVAPPVTIRQAVPVYAAPPSKKNEPAAVQQKDLPTAGASGQQDKLPVKIQEMD 391

Query: 280 -----VDETTAIKCLEQLEI 236
                  E+  ++ LEQL I
Sbjct: 392 KAENIPPESETMRSLEQLRI 411


Top