BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria24_contig00000742
         (2423 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001234374.1| PSTVd RNA-binding protein Virp1d [Solanum ly...   490   e-136
emb|CAD43286.1| bromodomain-containing RNA-binding protein 1 [Ni...   484   e-134
emb|CAD43284.1| bromodomain-containing RNA-binding protein 1 [Ni...   481   e-133
emb|CAD43287.1| bromodomain-containing RNA-binding protein 2 [Ni...   478   e-132
emb|CAD43283.1| bromodomain-containing RNA-binding protein 1 [So...   477   e-132

>ref|NP_001234374.1| PSTVd RNA-binding protein Virp1d [Solanum lycopersicum]
            gi|10179602|gb|AAG13810.1|AF190891_1 PSTVd RNA-binding
            protein Virp1a [Solanum lycopersicum]
            gi|10179604|gb|AAG13811.1|AF190892_1 PSTVd RNA-binding
            protein Virp1b [Solanum lycopersicum]
            gi|10179606|gb|AAG13812.1|AF190893_1 PSTVd RNA-binding
            protein Virp1c [Solanum lycopersicum]
            gi|10179608|gb|AAG13813.1|AF190894_1 PSTVd RNA-binding
            protein Virp1d [Solanum lycopersicum]
            gi|13186132|emb|CAC33448.1| PSTVd RNA-biding protein,
            Virp1 [Solanum lycopersicum] gi|13186134|emb|CAC33449.1|
            PSTVd RNA-biding protein, Virp1 [Solanum lycopersicum]
            gi|13186136|emb|CAC33450.1| PSTVd RNA-biding protein,
            Virp1 [Solanum lycopersicum] gi|13186138|emb|CAC33451.1|
            PSTVd RNA-biding protein, Virp1 [Solanum lycopersicum]
          Length = 602

 Score =  490 bits (1261), Expect = e-136
 Identities = 304/589 (51%), Positives = 373/589 (63%), Gaps = 33/589 (5%)
 Frame = +3

Query: 315  MASAALATRNESSWAP--------MGKXXXXXXXXXXXXXXXXXXXXRKQLHHAAANGVS 470
            MASA LA+RNESSWA         MGK                    +KQ HH +    +
Sbjct: 1    MASAVLASRNESSWAQSGGAGGGFMGKTPYSHTQLNPNHNPNPKKK-QKQFHHTS----N 55

Query: 471  GRYHNVNGDSPAVTQTASDDAYSFNQ----TSTTRNTVNYGGYLTFNVASYTKPELFELR 638
            GR+ +   DSPAVTQTASDDAYSFNQ    ++T  + +N+GGYLTFNV SY K E+ ELR
Sbjct: 56   GRHMD---DSPAVTQTASDDAYSFNQRPIESTTNVDGLNFGGYLTFNVVSYNKAEVNELR 112

Query: 639  KRLTAELDQIRDLRNQIESSRFSVSENPRSQPKLKKFNGTKRPGAVDASIPITERLYDGH 818
             RL AE++QIR+L+++IES + S + NPRSQ K KK +G KRP    +S  + ++L +G 
Sbjct: 113  SRLMAEVEQIRNLKDRIESGQLSTT-NPRSQGKSKKQSGNKRPTPSGSSKDL-KKLPNGV 170

Query: 819  DNGGSG---------LVNFEGLLKECSKIVAKLLKNKYGFIFKSPVNAVALGLHDYHLIV 971
            +N   G          +  E ++KEC +I+AKL+K+K G+IF  PV+A ALGLHDYH I+
Sbjct: 171  ENRNFGNPGGVDGVKAIGTESMMKECRQILAKLMKHKNGWIFNIPVDAEALGLHDYHQII 230

Query: 972  KRPMDLGTIRSNLTKNVYRTPSEFAADVRLTFNNALLYNPKTDPVNGMAEELLAQFEKLF 1151
            KRPMDLGT++SNL KN Y +P EFAADVRLTFNNALLYNPKTD VN  AE+LL +FE +F
Sbjct: 231  KRPMDLGTVKSNLAKNFYPSPFEFAADVRLTFNNALLYNPKTDQVNAFAEQLLGRFEDMF 290

Query: 1152 KPIQEQMDGAFNQRQVRDFHDFKVSNELPFREVEEVQGSSWNNHSNQITASPMRGKKSKP 1331
            +P+Q++M+     R  RD+H            V+E+QGSSWN+       +P R KK KP
Sbjct: 291  RPLQDKMNKLEGGR--RDYHP-----------VDELQGSSWNH-----IPTPERVKKPKP 332

Query: 1332 RSSPVPVAQIMKKSETPMRAHXXXXXXXXXXXXXXXXXXXXXXX-----VRAPSLSAKEQ 1496
                 PV  I KK E  M+ H                            VRAP+  AK Q
Sbjct: 333  ----TPVPNISKKQER-MQNHSSASTPSLPVPPPNPPARQQSPLSTPSPVRAPA--AKPQ 385

Query: 1497 KAGRVGTL-KQPKPKAKDPNKRDMSMDEKQKLGIGLQSLPQEKMPQLVQIIRKRNEHLAQ 1673
             A +V T+ KQPKP+AKDPNKR+M+M+EK KLG+GLQSLPQEKMPQLVQIIRKRNEHLAQ
Sbjct: 386  SAAKVPTMGKQPKPRAKDPNKREMNMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQ 445

Query: 1674 DGDEIELDIEALDTETLWELDRFVTNWKKMVSKTTRQALMNNNNP------ATVPTSPIA 1835
            DGDEIELDIEALDTETLWELDRFVTNWKKMVSKT RQALMNN  P      A+  T+ +A
Sbjct: 446  DGDEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALMNNLGPPSASAAASAATTSVA 505

Query: 1836 EADMCAMSDKNDEEEEAGKKLKERXXXXXXXXXXTPVESFPRVEIEKDE 1982
            EAD    S+KND  ++A  K  +            P   FP VEIEKDE
Sbjct: 506  EADGPTTSEKNDSFKKA--KKGDVGEEDVEIEDDEPATHFPPVEIEKDE 552


>emb|CAD43286.1| bromodomain-containing RNA-binding protein 1 [Nicotiana tabacum]
          Length = 617

 Score =  484 bits (1247), Expect = e-134
 Identities = 300/600 (50%), Positives = 369/600 (61%), Gaps = 44/600 (7%)
 Frame = +3

Query: 315  MASAALATRNESSWAP--------MGKXXXXXXXXXXXXXXXXXXXXRKQLHHAAANGVS 470
            MA A LA+RNESSWA         MGK                    +KQ HHA+    +
Sbjct: 1    MAFAVLASRNESSWAQSGGAGGGFMGKTPYSHTHLNPNSNPNPKKK-QKQFHHAS----N 55

Query: 471  GRYHNVNGDSPAVTQTASDDAYSFNQ----TSTTRNTVNYGGYLTFNVASYTKPELFELR 638
            GR+   N +SPAVTQTASDDAYSFNQ    +ST  + +N GGY+T+NVASY K EL ELR
Sbjct: 56   GRH---NDESPAVTQTASDDAYSFNQRPIESSTNVDGLNLGGYMTYNVASYNKTELHELR 112

Query: 639  KRLTAELDQIRDLRNQIESSRFSVSENPRSQPKLKKFNGTKRPGAVDASIPITERLYDGH 818
             RL AEL+QIR+L+++IES + S S NPRS  K KK +G KRP     S    ++L +G 
Sbjct: 113  SRLVAELEQIRNLKDRIESGQLSTS-NPRSHGKSKKLSGNKRP-TPSGSSKDRKKLLNGV 170

Query: 819  DN----------GGSGLVNFEGLLKECSKIVAKLLKNKYGFIFKSPVNAVALGLHDYHLI 968
            DN          G  G++  E ++KEC +++AKL+K+K G+IF +PV+A A+GLHDYH I
Sbjct: 171  DNRNFGNPGGGGGVKGIIGMENMMKECRQVLAKLMKHKSGWIFNTPVDAKAMGLHDYHQI 230

Query: 969  VKRPMDLGTIRSNLTKNVYRTPSEFAADVRLTFNNALLYNPKTDPVNGMAEELLAQFEKL 1148
            +KRPMDLGT++SNL  N Y TP EFAADVRLTFNNALLYNPKTD V+G AE+LLA+FE +
Sbjct: 231  IKRPMDLGTVKSNLINNFYPTPFEFAADVRLTFNNALLYNPKTDQVHGFAEQLLARFEDM 290

Query: 1149 FKPIQEQM---DGAFNQRQVRDFHDFKVSNELPFREVEEVQGSSWNNHSNQITASPMRGK 1319
            F+PIQ+++   DG   +R               FR ++E+QGSSWN+       +P R K
Sbjct: 291  FRPIQDKLNKLDGGTGRRD--------------FRAIDELQGSSWNH-----IPTPERVK 331

Query: 1320 KSKPRSSPVPVAQIMKKSETPMRAHXXXXXXXXXXXXXXXXXXXXXXX--------VRAP 1475
            K KP  +P     I KK E  M+ H                               VRAP
Sbjct: 332  KPKPTPAP----HISKKQERMMQNHSSASTPSLPVQQPPDNPPVVRQQSPLSTPSPVRAP 387

Query: 1476 SLSAKEQK--AGRVGTL-KQPKPKAKDPNKRDMSMDEKQKLGIGLQSLPQEKMPQLVQII 1646
              +AK Q   A +V  + KQPKP+AKDPNKR+MSM+EK KLG+GLQSLPQEKMPQLVQII
Sbjct: 388  P-AAKPQSSVAAKVPPMGKQPKPRAKDPNKREMSMEEKHKLGVGLQSLPQEKMPQLVQII 446

Query: 1647 RKRNEHLAQDGDEIELDIEALDTETLWELDRFVTNWKKMVSKTTRQALMNNNN------- 1805
            RKRNEHLAQDGDEIELDIEALDTETLWELDRFVTNWKKMVSKT RQAL+NN         
Sbjct: 447  RKRNEHLAQDGDEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALINNLGQPPSASA 506

Query: 1806 -PATVPTSPIAEADMCAMSDKNDEEEEAGKKLKERXXXXXXXXXXTPVESFPRVEIEKDE 1982
              +   T+ +AEAD  + S+KND  ++  K                P   FP VEIE D+
Sbjct: 507  AASAATTTSVAEADGPSTSEKNDSFKKPKKGGDAGDEDDVEIEDDEPATHFPPVEIEIDK 566


>emb|CAD43284.1| bromodomain-containing RNA-binding protein 1 [Nicotiana benthamiana]
          Length = 615

 Score =  481 bits (1239), Expect = e-133
 Identities = 295/607 (48%), Positives = 364/607 (59%), Gaps = 37/607 (6%)
 Frame = +3

Query: 315  MASAALATRNESSWAP--------MGKXXXXXXXXXXXXXXXXXXXXRKQLHHAAANGVS 470
            MASA LA+RNESSWA         MGK                    +KQ HHA+    +
Sbjct: 1    MASAVLASRNESSWAQSGGAGGGFMGKTPYSHTHLNPNSNPKPKKK-QKQFHHAS----N 55

Query: 471  GRYHNVNGDSPAVTQTASDDAYSFNQ----TSTTRNTVNYGGYLTFNVASYTKPELFELR 638
            GR    N +SPAVTQTASDDAYSFNQ    +ST  + +N GGY+T+NVASY K EL ELR
Sbjct: 56   GRQ---NDESPAVTQTASDDAYSFNQRPIESSTNVDGLNLGGYMTYNVASYNKTELHELR 112

Query: 639  KRLTAELDQIRDLRNQIESSRFSVSENPRSQPKLKKFNGTKRPGAVDASIPITERLYDGH 818
             RL AEL+QIR L+++IES + S S NPRS  K KK +G KR      S    ++L +G 
Sbjct: 113  SRLVAELEQIRSLKDRIESGQLSTS-NPRSHGKSKKLSGNKR-ATPSGSSKDPKKLPNGV 170

Query: 819  DN---------GGSGLVNFEGLLKECSKIVAKLLKNKYGFIFKSPVNAVALGLHDYHLIV 971
            DN         G  G++  E ++KEC +++ KL+K+K G+IF +PV+A ALGLHDYH I+
Sbjct: 171  DNRNFGNPGGVGVKGIIGMENMMKECRQVLGKLMKHKSGWIFNTPVDAEALGLHDYHQII 230

Query: 972  KRPMDLGTIRSNLTKNVYRTPSEFAADVRLTFNNALLYNPKTDPVNGMAEELLAQFEKLF 1151
            KRPMDLGT++SNL+   Y TP EFAADVRLTFNNALLYNPKTD V+G AE+LLA+FE +F
Sbjct: 231  KRPMDLGTVKSNLSNCFYPTPFEFAADVRLTFNNALLYNPKTDQVHGFAEQLLARFEDMF 290

Query: 1152 KPIQEQMDGAFNQRQVRDFHDFKVSNELPFREVEEVQGSSWNNHSNQITASPMRGKKSKP 1331
            +PIQ++++        RDFH             +E+QG SWN+       +P R KK KP
Sbjct: 291  RPIQDKLNKLDGGSDRRDFHP-----------TDELQGISWNH-----IPTPERVKKPKP 334

Query: 1332 RSSPVPVAQIMKKSETPMRAHXXXXXXXXXXXXXXXXXXXXXXXVRAPSL-------SAK 1490
              +P     I KK E  M+ H                       +  PS          +
Sbjct: 335  TPAP----HISKKQERMMQNHSSALTLPVQQPPDNTPVVRQQSLLSTPSPVRAPPAPKPQ 390

Query: 1491 EQKAGRVGTL-KQPKPKAKDPNKRDMSMDEKQKLGIGLQSLPQEKMPQLVQIIRKRNEHL 1667
               A +V  + KQPKP+AKDPNKR+MSM+EK KLG+GLQSLPQEKMPQLVQIIRKRNEHL
Sbjct: 391  SSVAAKVPPMGKQPKPRAKDPNKREMSMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHL 450

Query: 1668 AQDGDEIELDIEALDTETLWELDRFVTNWKKMVSKTTRQALMNNNN--------PATVPT 1823
            AQDGDEIELDIEALDTETLWELDRFVTNWKKMVSKT RQAL+NN           +   T
Sbjct: 451  AQDGDEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATT 510

Query: 1824 SPIAEADMCAMSDKNDEEEEAGKKLKERXXXXXXXXXXTPVESFPRVEIEKDEXXXXXXX 2003
            + +AEAD  + S+KND  ++  K                P   FP VEI+KDE       
Sbjct: 511  TSVAEADAPSTSEKNDSFKKPKKGGDAGDEDDVEIEDDEPATHFPPVEIDKDEGGGGGGV 570

Query: 2004 XXDVNHN 2024
              D ++N
Sbjct: 571  GQDRDNN 577


>emb|CAD43287.1| bromodomain-containing RNA-binding protein 2 [Nicotiana tabacum]
          Length = 616

 Score =  478 bits (1231), Expect = e-132
 Identities = 297/596 (49%), Positives = 366/596 (61%), Gaps = 40/596 (6%)
 Frame = +3

Query: 315  MASAALATRNESSWAP--------MGKXXXXXXXXXXXXXXXXXXXXRKQLHHAAANGVS 470
            MASA LA+RNESSWA         MGK                    +KQ HHA+    +
Sbjct: 1    MASAVLASRNESSWAQSGGAGGGFMGKTPYSHTQLNPNSNPNPKKK-QKQFHHAS----N 55

Query: 471  GRYHNVNGDSPAVTQTASDDAYSFNQ----TSTTRNTVNYGGYLTFNVASYTKPELFELR 638
            GR   +  +SPAVTQTASDDAYSFNQ    +ST  + +N GGY+T+N ASY K EL ELR
Sbjct: 56   GR---LTDESPAVTQTASDDAYSFNQRPIESSTNVDGLNLGGYMTYNXASYNKTELHELR 112

Query: 639  KRLTAELDQIRDLRNQIESSRFSVSENPRSQPKLKKFNGTKRPGAVDASIPITERLYDGH 818
             RL AEL+QIR+L+++IES + S S NPRS  K KK +G KRP     S    ++L +G 
Sbjct: 113  SRLVAELEQIRNLKDRIESGQLSTS-NPRSHGKSKKLSGNKRP-TPSGSSKDPKKLPNGV 170

Query: 819  DN---------GGSGLVNFEGLLKECSKIVAKLLKNKYGFIFKSPVNAVALGLHDYHLIV 971
            DN         G  G++  E ++KEC++++ KL+K+K G+IF +PV+A ALGLHDYH I+
Sbjct: 171  DNRNFGNPGGGGVKGIIGKENMMKECTQVLGKLMKHKSGWIFNTPVDAEALGLHDYHQII 230

Query: 972  KRPMDLGTIRSNLTKNVYRTPSEFAADVRLTFNNALLYNPKTDPVNGMAEELLAQFEKLF 1151
            KRP DLGT +SNL+ N Y TP EFAADVRLTFNNALLYNPKTD V+G AE+LLA+FE +F
Sbjct: 231  KRPXDLGTXKSNLSNNFYPTPFEFAADVRLTFNNALLYNPKTDQVHGFAEQLLARFEDMF 290

Query: 1152 KPIQEQMDGAFNQRQVRDFHDFKVSNELPFREVEEVQGSSWNNHSNQITASPMRGKKSKP 1331
            +PIQ++++        RDFH            ++E+QGSSWN+       +P R KK KP
Sbjct: 291  RPIQDKLNKLDGGSGRRDFH-----------AIDELQGSSWNH-----IPTPERVKKPKP 334

Query: 1332 RSSPVPVAQIMKKSETPMRAHXXXXXXXXXXXXXXXXXXXXXXX--------VRAPSLSA 1487
              +P     I KK E  M+ H                               VRAP  +A
Sbjct: 335  TPAP----HISKKQERMMQNHSSASTPSLPVQQPPDNPPVVRQQSPLSTPSPVRAPP-AA 389

Query: 1488 KEQK--AGRVGTL-KQPKPKAKDPNKRDMSMDEKQKLGIGLQSLPQEKMPQLVQIIRKRN 1658
            K Q   A +V  + KQPKP+AKDPNKR+MSM+EK KLG+GLQSLPQEKMPQLVQIIRKRN
Sbjct: 390  KPQSSVAAKVPPMGKQPKPRAKDPNKREMSMEEKHKLGVGLQSLPQEKMPQLVQIIRKRN 449

Query: 1659 EHLAQDGDEIELDIEALDTETLWELDRFVTNWKKMVSKTTRQALMNNNN--------PAT 1814
            EHLAQDGDEIELDIEALDTETLWELDRFVTNWKKMVSKT RQAL+NN           + 
Sbjct: 450  EHLAQDGDEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASA 509

Query: 1815 VPTSPIAEADMCAMSDKNDEEEEAGKKLKERXXXXXXXXXXTPVESFPRVEIEKDE 1982
              T+ +AEAD  + S+KND  ++  K                P   FP VEIE D+
Sbjct: 510  ATTTSVAEADGPSTSEKNDSFKKPKKGGDAGDEDDVEIEDDEPATHFPPVEIEIDK 565


>emb|CAD43283.1| bromodomain-containing RNA-binding protein 1 [Solanum tuberosum]
          Length = 602

 Score =  477 bits (1228), Expect = e-132
 Identities = 298/590 (50%), Positives = 371/590 (62%), Gaps = 34/590 (5%)
 Frame = +3

Query: 315  MASAALATRNESSWAP--------MGKXXXXXXXXXXXXXXXXXXXXRKQLHHAAANGVS 470
            MASA LA+RNESSWA         MGK                    +KQ HH +    +
Sbjct: 1    MASAVLASRNESSWAQSGGAGGGFMGKTPFSHTQLNPNHNPNPKKK-QKQFHHTS----N 55

Query: 471  GRYHNVNGDSPAVTQTASDDAYSFNQ----TSTTRNTVNYGGYLTFNVASYTKPELFELR 638
            GR+ +   +SPAVTQTASDDAYSFNQ    ++T  + +N+GGYLTFNV SY K E+ ELR
Sbjct: 56   GRHID---ESPAVTQTASDDAYSFNQRPIESTTNVDGLNFGGYLTFNVVSYNKGEVNELR 112

Query: 639  KRLTAELDQIRDLRNQIESSRFSVSENPRSQPKLKKFNGTKRPGAVDASIPITERLYDGH 818
             RL AE++QIR+L+++IES + S + NPRSQ K KK +G KRP     S    ++L +G 
Sbjct: 113  SRLLAEVEQIRNLKDRIESGQLSTT-NPRSQGKSKKLSGNKRP-TPSGSSKDPKKLPNGV 170

Query: 819  DN-------GGSGL--VNFEGLLKECSKIVAKLLKNKYGFIFKSPVNAVALGLHDYHLIV 971
            +N       GG G+  +  E ++KEC +I+AKL+K+K G+IF  PV+A ALGLHDYH I+
Sbjct: 171  ENRNFGNPVGGGGVKAIGTESMMKECRQILAKLMKHKNGWIFNIPVDAEALGLHDYHQII 230

Query: 972  KRPMDLGTIRSNLTKNVYRTPSEFAADVRLTFNNALLYNPKTDPVNGMAEELLAQFEKLF 1151
            KRP+DLGT++SNL KN Y +P EFAADVRLTFNNALLYNPKTD VNG AE+LL +FE +F
Sbjct: 231  KRPIDLGTVKSNLAKNFYPSPFEFAADVRLTFNNALLYNPKTDQVNGFAEQLLGRFEDMF 290

Query: 1152 KPIQEQMDGAFNQRQVRDFHDFKVSNELPFREVEEVQGSSWNNHSNQITASPMRGKKSKP 1331
            +P+Q++M+     R  RD+H            V+E+QGSSWN+        P   +  KP
Sbjct: 291  RPLQDKMNKLEGGR--RDYHP-----------VDELQGSSWNH-------IPTPERVKKP 330

Query: 1332 RSSPVPVAQIMKKSETPMRAHXXXXXXXXXXXXXXXXXXXXXXX-----VRAPSLSAKEQ 1496
            +++PVP   I KK E  M+ H                            VRAP   +K +
Sbjct: 331  KATPVP--HISKKQER-MQNHSSASTPSLPVPPPNPPARQQSPLSTPSPVRAPP--SKPE 385

Query: 1497 KAGRVGTL-KQPKPKAKDPNKRDMSMDEKQKLGIGLQSLPQEKMPQLVQIIRKRNEHLAQ 1673
             A +V  + KQPKP+AKDPNKR M+M+EK KLG+GLQSLPQEKMPQLVQIIRKRNEHLAQ
Sbjct: 386  SAAKVPAMGKQPKPRAKDPNKRVMNMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQ 445

Query: 1674 DGDEIELDIEALDTETLWELDRFVTNWKKMVSKTTRQALMNNN-------NPATVPTSPI 1832
            DGDEIELDIEALDTETLWELDRFVTNWKKMVSKT RQALM NN         A+  T+ +
Sbjct: 446  DGDEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALMINNLGPPSASAAASAATTSV 505

Query: 1833 AEADMCAMSDKNDEEEEAGKKLKERXXXXXXXXXXTPVESFPRVEIEKDE 1982
            AEAD    S+KND  ++   K  +            P   FP VEIEKDE
Sbjct: 506  AEADGPTTSEKNDSFKK--PKKGDVGEEDVEIEDDEPATHFPPVEIEKDE 553