BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria23_contig00035423
         (344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum ma...   113   2e-23
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...    82   5e-14
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...    81   1e-13
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...    76   3e-12
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    67   1e-09

>gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus]
          Length = 1112

 Score =  113 bits (282), Expect = 2e-23
 Identities = 61/115 (53%), Positives = 79/115 (68%), Gaps = 2/115 (1%)
 Frame = +3

Query: 3   RTLDFINCGQALLCEWLSRRGXXXXXXXXXXXXXQESRRNLLDEVSCGLQEAEMVSDISL 182
           +TLD ++  Q +LCEWLSRRG              +SR+NLLD+++CGL+EAE +SDISL
Sbjct: 277 KTLDILHAAQEVLCEWLSRRGLSVSLSDLCLSSDPQSRKNLLDDIACGLEEAEKMSDISL 336

Query: 183 LMVDRNQDFLVESSEESGYMENFLKGR--ILVSQQTKPELVQALISASKSVFRDM 341
           LMV  NQ FL+E+SEE    E+ LK +  + V+QQT  EL QA + ASKSVFRDM
Sbjct: 337 LMVGHNQRFLIENSEED---EDMLKSKEHLYVAQQTSAELCQASLFASKSVFRDM 388


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 49/112 (43%), Positives = 60/112 (53%)
 Frame = +3

Query: 6   TLDFINCGQALLCEWLSRRGXXXXXXXXXXXXXQESRRNLLDEVSCGLQEAEMVSDISLL 185
           TLD +   Q +LCEWLS RG               SR N++DEV  GLQEAE +S I LL
Sbjct: 278 TLDLLYAAQTVLCEWLSMRGLSVSLSDLYISADSYSRENMIDEVCSGLQEAERLSYIQLL 337

Query: 186 MVDRNQDFLVESSEESGYMENFLKGRILVSQQTKPELVQALISASKSVFRDM 341
           M+  N+DFL  + EES     F    + + QQ    L QA  SA K VFRD+
Sbjct: 338 MIKYNKDFLSGNLEESKNSMGFDFEFMSIMQQKSASLSQASASAFKKVFRDI 389


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
           sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
           QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
           1-like [Cucumis sativus]
          Length = 1469

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 39/113 (34%), Positives = 64/113 (56%)
 Frame = +3

Query: 3   RTLDFINCGQALLCEWLSRRGXXXXXXXXXXXXXQESRRNLLDEVSCGLQEAEMVSDISL 182
           +TLD++   Q +LCEWLS RG               S  N++D++ CGLQEAE   ++  
Sbjct: 610 KTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGLQEAEETCNLKQ 669

Query: 183 LMVDRNQDFLVESSEESGYMENFLKGRILVSQQTKPELVQALISASKSVFRDM 341
           LMVD +++ L+ + E++ ++ +    R++  +Q    L QA + A K VFRD+
Sbjct: 670 LMVDSHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALNQASVDAFKKVFRDI 722


>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 1475

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 42/113 (37%), Positives = 58/113 (51%)
 Frame = +3

Query: 3   RTLDFINCGQALLCEWLSRRGXXXXXXXXXXXXXQESRRNLLDEVSCGLQEAEMVSDISL 182
           + LDF+   Q +LCEWLS RG              +SR N++DEV  GLQ+A+   ++  
Sbjct: 604 QVLDFLYIAQEVLCEWLSMRGLSVSLSDLYLCPDSDSRENMMDEVLFGLQDAKGTCNMKQ 663

Query: 183 LMVDRNQDFLVESSEESGYMENFLKGRILVSQQTKPELVQALISASKSVFRDM 341
            MVD  +DFL    E+  Y  NF    +   +Q    L QA + A K VFRD+
Sbjct: 664 FMVDSCRDFLASIDEDEQYSVNFDVEHLCHEKQRSAALSQASVDAFKHVFRDI 716


>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D
           subunit 1-like [Vitis vinifera]
          Length = 1560

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
 Frame = +3

Query: 3   RTLDFINCGQALLCEWLSRRGXXXXXXXXXXXXXQESRRNLLDEVSCGLQEAEMVSDISL 182
           + LDF+   Q +LCEWLS RG               SR+N++DEV CGL  AE       
Sbjct: 632 KALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQ 691

Query: 183 LMVDRNQDFLVESSE--ESGYMENFLKGRILVSQQTKPELVQALISASKSVFRDM 341
           L+VD +Q+FL+ S E  ++G + +     +   +Q    L Q+ + A K  FRD+
Sbjct: 692 LLVDSSQNFLIGSGENNQNGVVPDVQS--LWYERQGSAALCQSSVCAFKQKFRDI 744