BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria23_contig00034910
         (285 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum ma...   126   2e-27
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   122   4e-26
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   104   7e-21
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   102   4e-20
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   102   4e-20

>gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus]
          Length = 1112

 Score =  126 bits (317), Expect = 2e-27
 Identities = 57/94 (60%), Positives = 78/94 (82%), Gaps = 1/94 (1%)
 Frame = -1

Query: 282  SLKEFSDLEILRDLVKPVLLQTVIKGFQEFKKVDILWKDGPN-SKSPRCPSGEMFLRVVM 106
            SLKE+  L+ LR++V PVLL+TV+KGF EFKKVDILWKD  + S+  +C SGE ++RV M
Sbjct: 741  SLKEYEILDYLRNMVIPVLLRTVVKGFPEFKKVDILWKDEQSRSRFSKCSSGEPYVRVFM 800

Query: 105  SEHCERTKFWNILIDKCLRVKDIIDWERSHPDEL 4
            SE+CER +FWNIL++K LR++ +IDW+RSHPD++
Sbjct: 801  SENCERARFWNILVEKSLRIRSLIDWDRSHPDDV 834


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  122 bits (305), Expect = 4e-26
 Identities = 55/87 (63%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
 Frame = -1

Query: 261  LEILRDLVKPVLLQTVIKGFQEFKKVDILWKDGPN-SKSPRCPSGEMFLRVVMSEHCERT 85
            L+ LRD+V P LL+TVIKGF  FKKVDILWK+ P+ SKS R P+GE++L+V MSE C+R 
Sbjct: 752  LDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGPTGELYLQVFMSESCDRI 811

Query: 84   KFWNILIDKCLRVKDIIDWERSHPDEL 4
            KFWN L+D CL+++D+IDWERS+PD++
Sbjct: 812  KFWNALVDSCLQIRDLIDWERSYPDDV 838


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 1517

 Score =  104 bits (260), Expect = 7e-21
 Identities = 51/94 (54%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
 Frame = -1

Query: 282  SLKEFSDLEILRDLVKPVLLQTVIKGFQEFKKVDILWKDGPN-SKSPRCPSGEMFLRVVM 106
            S  EF +LE ++DL+ P LL+TVIKGF E +KVDILW D P   KS     GE+FLRV M
Sbjct: 1107 SKNEFIELETIQDLMIPFLLETVIKGFMEIQKVDILWNDKPKIPKSHNRLRGELFLRVHM 1166

Query: 105  SEHCERTKFWNILIDKCLRVKDIIDWERSHPDEL 4
            S   ++T+ WN L+D CL + D+IDW RSHPD +
Sbjct: 1167 SRGSDKTRLWNQLMDDCLSIMDLIDWARSHPDNI 1200


>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  102 bits (253), Expect = 4e-20
 Identities = 46/93 (49%), Positives = 62/93 (66%)
 Frame = -1

Query: 282  SLKEFSDLEILRDLVKPVLLQTVIKGFQEFKKVDILWKDGPNSKSPRCPSGEMFLRVVMS 103
            S K    L+ +RDLV P LL  V+KG  + KKVDILW D P+S   +  SG ++LRV +S
Sbjct: 1095 SKKSCIQLDTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNPDSDVLKSSSGRLYLRVYVS 1154

Query: 102  EHCERTKFWNILIDKCLRVKDIIDWERSHPDEL 4
              C +  FW +L+D CL++ D+IDWERSHPD +
Sbjct: 1155 GDCGKKNFWGVLMDACLQIMDMIDWERSHPDNI 1187


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  102 bits (253), Expect = 4e-20
 Identities = 46/93 (49%), Positives = 62/93 (66%)
 Frame = -1

Query: 282  SLKEFSDLEILRDLVKPVLLQTVIKGFQEFKKVDILWKDGPNSKSPRCPSGEMFLRVVMS 103
            S K    L+ +RDLV P LL  V+KG  + KKVDILW D P+S   +  SG ++LRV +S
Sbjct: 1210 SKKSCIQLDTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNPDSDVLKSSSGRLYLRVYVS 1269

Query: 102  EHCERTKFWNILIDKCLRVKDIIDWERSHPDEL 4
              C +  FW +L+D CL++ D+IDWERSHPD +
Sbjct: 1270 GDCGKKNFWGVLMDACLQIMDMIDWERSHPDNI 1302