BLASTX nr result
ID: Scutellaria23_contig00031065
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Scutellaria23_contig00031065
(455 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFU96954.1| RpoC1, partial (chloroplast) [Euphronia guianensis] 49 2e-07
gb|ADT63224.1| RNA polymerase beta subunit [Gaultheria procumbens] 44 4e-06
gb|AEJ88346.1| RNA polymerase beta-subunit, partial (chloroplast... 47 4e-06
gb|AEJ88344.1| RNA polymerase beta-subunit, partial (chloroplast... 47 4e-06
gb|AEJ88356.1| RNA polymerase beta-subunit, partial (chloroplast... 47 4e-06
>gb|AFU96954.1| RpoC1, partial (chloroplast) [Euphronia guianensis]
Length = 731
Score = 48.5 bits (114), Expect(3) = 2e-07
Identities = 34/88 (38%), Positives = 41/88 (46%), Gaps = 30/88 (34%)
Frame = -1
Query: 314 LFIGPLLSLHRYELPREIAIELFQTSVFVFYLDNNILLRI-------------------- 195
+ +GPLLSLHR LPREIAIELFQT V + N++ L I
Sbjct: 420 IVVGPLLSLHRCGLPREIAIELFQTFVIRGLIRNHLALNIKVAKSKIQEKEXXPIVWEIL 479
Query: 194 ----------*GRALSLHKLRIHAFHPI 141
RA +LH+L I AF PI
Sbjct: 480 QEVMRGHPVLLNRAPTLHRLGIQAFQPI 507
Score = 28.9 bits (63), Expect(3) = 2e-07
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2
Query: 145 PLVCKRFNTDFDG 107
PLVCK FN DFDG
Sbjct: 518 PLVCKGFNADFDG 530
Score = 21.6 bits (44), Expect(3) = 2e-07
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -3
Query: 354 LLGKRVDLSCHSSIV 310
LLGKRVD S S IV
Sbjct: 407 LLGKRVDYSGRSVIV 421
>gb|ADT63224.1| RNA polymerase beta subunit [Gaultheria procumbens]
Length = 160
Score = 44.3 bits (103), Expect(3) = 4e-06
Identities = 31/86 (36%), Positives = 38/86 (44%), Gaps = 28/86 (32%)
Frame = -1
Query: 314 LFIGPLLSLHRYELPREIAIELFQTSVFVFYLDNNILLRI-------------------- 195
+ +GP LSLHR LPREIA+ELFQT V + + L +
Sbjct: 14 IVVGPSLSLHRCGLPREIALELFQTFVIRALIIQRLALNVKAAKIQIMEKEPIIWEMLRQ 73
Query: 194 --------*GRALSLHKLRIHAFHPI 141
RA +LHKL I AF PI
Sbjct: 74 VMEGHPVLLNRAPTLHKLGIQAFQPI 99
Score = 28.9 bits (63), Expect(3) = 4e-06
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2
Query: 145 PLVCKRFNTDFDG 107
PLVCK FN DFDG
Sbjct: 110 PLVCKGFNADFDG 122
Score = 21.6 bits (44), Expect(3) = 4e-06
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -3
Query: 354 LLGKRVDLSCHSSIV 310
LLGKRVD S S IV
Sbjct: 1 LLGKRVDYSGRSVIV 15
>gb|AEJ88346.1| RNA polymerase beta-subunit, partial (chloroplast) [Cistus albidus
x Cistus heterophyllus]
Length = 134
Score = 46.6 bits (109), Expect(2) = 4e-06
Identities = 33/86 (38%), Positives = 39/86 (45%), Gaps = 28/86 (32%)
Frame = -1
Query: 314 LFIGPLLSLHRYELPREIAIELFQTSVFVFYLDNNILLRI-------------------- 195
+ +GPLLSLHR LPRE+AIELFQT V + NI I
Sbjct: 4 IVVGPLLSLHRCGLPRELAIELFQTFVIRNLIRKNIASNIGVAKRQIREKGQIVWQILEE 63
Query: 194 --------*GRALSLHKLRIHAFHPI 141
RA +LH+L I AF PI
Sbjct: 64 VIQGHPVLLNRAPTLHRLGIQAFQPI 89
Score = 28.9 bits (63), Expect(2) = 4e-06
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2
Query: 145 PLVCKRFNTDFDG 107
PLVCK FN DFDG
Sbjct: 100 PLVCKGFNADFDG 112
>gb|AEJ88344.1| RNA polymerase beta-subunit, partial (chloroplast) [Cistus albidus
x Cistus heterophyllus] gi|339716212|gb|AEJ88345.1| RNA
polymerase beta-subunit, partial (chloroplast) [Cistus
albidus x Cistus heterophyllus]
gi|339716220|gb|AEJ88349.1| RNA polymerase beta-subunit,
partial (chloroplast) [Cistus heterophyllus]
gi|339716222|gb|AEJ88350.1| RNA polymerase beta-subunit,
partial (chloroplast) [Cistus heterophyllus]
gi|339716224|gb|AEJ88351.1| RNA polymerase beta-subunit,
partial (chloroplast) [Cistus heterophyllus]
gi|339716226|gb|AEJ88352.1| RNA polymerase beta-subunit,
partial (chloroplast) [Cistus heterophyllus]
gi|339716228|gb|AEJ88353.1| RNA polymerase beta-subunit,
partial (chloroplast) [Cistus heterophyllus]
gi|339716230|gb|AEJ88354.1| RNA polymerase beta-subunit,
partial (chloroplast) [Cistus albidus]
gi|339716232|gb|AEJ88355.1| RNA polymerase beta-subunit,
partial (chloroplast) [Cistus albidus]
gi|339716236|gb|AEJ88357.1| RNA polymerase beta-subunit,
partial (chloroplast) [Cistus albidus]
gi|339716238|gb|AEJ88358.1| RNA polymerase beta-subunit,
partial (chloroplast) [Cistus albidus]
Length = 134
Score = 46.6 bits (109), Expect(2) = 4e-06
Identities = 33/86 (38%), Positives = 39/86 (45%), Gaps = 28/86 (32%)
Frame = -1
Query: 314 LFIGPLLSLHRYELPREIAIELFQTSVFVFYLDNNILLRI-------------------- 195
+ +GPLLSLHR LPRE+AIELFQT V + NI I
Sbjct: 4 IVVGPLLSLHRCGLPRELAIELFQTFVIRNLIRKNIASNIGVAKRQIREKGQIVWQILEE 63
Query: 194 --------*GRALSLHKLRIHAFHPI 141
RA +LH+L I AF PI
Sbjct: 64 VIQGHPVLLNRAPTLHRLGIQAFQPI 89
Score = 28.9 bits (63), Expect(2) = 4e-06
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2
Query: 145 PLVCKRFNTDFDG 107
PLVCK FN DFDG
Sbjct: 100 PLVCKGFNADFDG 112
>gb|AEJ88356.1| RNA polymerase beta-subunit, partial (chloroplast) [Cistus albidus]
Length = 116
Score = 46.6 bits (109), Expect(2) = 4e-06
Identities = 33/86 (38%), Positives = 39/86 (45%), Gaps = 28/86 (32%)
Frame = -1
Query: 314 LFIGPLLSLHRYELPREIAIELFQTSVFVFYLDNNILLRI-------------------- 195
+ +GPLLSLHR LPRE+AIELFQT V + NI I
Sbjct: 4 IVVGPLLSLHRCGLPRELAIELFQTFVIRNLIRKNIASNIGVAKRQIREKGQIVWQILEE 63
Query: 194 --------*GRALSLHKLRIHAFHPI 141
RA +LH+L I AF PI
Sbjct: 64 VIQGHPVLLNRAPTLHRLGIQAFQPI 89
Score = 28.9 bits (63), Expect(2) = 4e-06
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2
Query: 145 PLVCKRFNTDFDG 107
PLVCK FN DFDG
Sbjct: 100 PLVCKGFNADFDG 112