BLASTX nr result

ID: Scutellaria23_contig00023440 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria23_contig00023440
         (294 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002301626.1| glutamate-gated kainate-type ion channel rec...    62   6e-08
ref|XP_002524180.1| glutamate receptor 3 plant, putative [Ricinu...    60   2e-07

>ref|XP_002301626.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
           [Populus trichocarpa] gi|222843352|gb|EEE80899.1|
           glutamate-gated kainate-type ion channel receptor
           subunit GluR5 [Populus trichocarpa]
          Length = 861

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 35/73 (47%), Positives = 44/73 (60%)
 Frame = -2

Query: 293 FALTALCVFLIRAVRQYIVYRRRQMRPXXXXXXXXXXXXXXXSAAIRHFLEFIDEKEEAI 114
           FALTAL VFL+R VRQ++ Y+RRQ+R                S  I HF +FIDE+EEAI
Sbjct: 789 FALTALVVFLLRMVRQFVRYKRRQLR---CSSPSSISPSTRCSHVIYHFFDFIDEREEAI 845

Query: 113 KRFFVQHDMPSSQ 75
           K+ F Q + P  Q
Sbjct: 846 KKMFNQREHPHPQ 858


>ref|XP_002524180.1| glutamate receptor 3 plant, putative [Ricinus communis]
            gi|223536549|gb|EEF38195.1| glutamate receptor 3 plant,
            putative [Ricinus communis]
          Length = 921

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 33/72 (45%), Positives = 44/72 (61%)
 Frame = -2

Query: 287  LTALCVFLIRAVRQYIVYRRRQMRPXXXXXXXXXXXXXXXSAAIRHFLEFIDEKEEAIKR 108
            L AL +FL+RAVRQ++ Y+RRQM+                   I HF +FID+KEEAIK+
Sbjct: 848  LAALLLFLLRAVRQFVHYKRRQMQQVPPSVILSTTRCSQI---IFHFFDFIDKKEEAIKK 904

Query: 107  FFVQHDMPSSQV 72
             F+Q D P+ QV
Sbjct: 905  MFMQCDHPAPQV 916