BLASTX nr result

ID: Scutellaria23_contig00020202 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria23_contig00020202
         (298 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002302000.1| predicted protein [Populus trichocarpa] gi|2...   148   5e-34
ref|XP_002521664.1| pentatricopeptide repeat-containing protein,...   145   3e-33
emb|CBI19832.3| unnamed protein product [Vitis vinifera]              143   1e-32
ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containi...   143   1e-32
ref|XP_003590744.1| Pentatricopeptide repeat-containing protein ...   137   7e-31

>ref|XP_002302000.1| predicted protein [Populus trichocarpa] gi|222843726|gb|EEE81273.1|
           predicted protein [Populus trichocarpa]
          Length = 797

 Score =  148 bits (373), Expect = 5e-34
 Identities = 67/99 (67%), Positives = 87/99 (87%)
 Frame = -2

Query: 297 DVVARTTLVAAYSASGKPKLAREIFENTPLRIRDTVCYNAMITCYSHNNDGHAAIQLFND 118
           D+VARTTL+AAYSA+G  KL+R+IF +TPL +RD+V YNAMIT YSHN+DGHAAI+LF D
Sbjct: 78  DIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCD 137

Query: 117 MRQKGFKPDDFTYTSVLGALGLIASREMHCEQLHCAVIK 1
           M++  F+PD++T+TSVLGAL L+A +E HC+QLHCAV+K
Sbjct: 138 MQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVK 176


>ref|XP_002521664.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539055|gb|EEF40651.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 574

 Score =  145 bits (367), Expect = 3e-33
 Identities = 67/99 (67%), Positives = 82/99 (82%)
 Frame = -2

Query: 297 DVVARTTLVAAYSASGKPKLAREIFENTPLRIRDTVCYNAMITCYSHNNDGHAAIQLFND 118
           D+VARTTL+ AYSA+G  KLA+E+F  TPL +RD V YNAMIT YSHNNDGHAAI+LF D
Sbjct: 82  DIVARTTLINAYSATGHLKLAKEMFYETPLIMRDAVIYNAMITAYSHNNDGHAAIELFCD 141

Query: 117 MRQKGFKPDDFTYTSVLGALGLIASREMHCEQLHCAVIK 1
           M++  F+PD+FT+TSVLGAL L+A  E HC+QLHC V+K
Sbjct: 142 MKRNDFRPDNFTFTSVLGALALVAENERHCQQLHCTVVK 180



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 33/99 (33%), Positives = 54/99 (54%)
 Frame = -2

Query: 297 DVVARTTLVAAYSASGKPKLAREIFENTPLRIRDTVCYNAMITCYSHNNDGHAAIQLFND 118
           D ++ TT++  Y  +     ARE+F+   +R +  V +NAMI+ Y H      A+++F  
Sbjct: 226 DELSWTTIITGYVKNDDLDAAREVFDG--MREKLVVVWNAMISGYMHRGLYQEALEMFRK 283

Query: 117 MRQKGFKPDDFTYTSVLGALGLIASREMHCEQLHCAVIK 1
           M   G K D+FTYTS++ A    A    H +Q+H  ++K
Sbjct: 284 MYLAGLKLDEFTYTSIISACA-NAGFLQHGKQVHAYILK 321


>emb|CBI19832.3| unnamed protein product [Vitis vinifera]
          Length = 544

 Score =  143 bits (361), Expect = 1e-32
 Identities = 67/99 (67%), Positives = 81/99 (81%)
 Frame = -2

Query: 297 DVVARTTLVAAYSASGKPKLAREIFENTPLRIRDTVCYNAMITCYSHNNDGHAAIQLFND 118
           D+VARTTL+AA+S++G   LAREIF  TPL IRDTVCYNAMIT YSHNNDG  AI+LF D
Sbjct: 78  DIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRD 137

Query: 117 MRQKGFKPDDFTYTSVLGALGLIASREMHCEQLHCAVIK 1
           + + GF+PD+FT+TSVLGAL LI   E  C+Q+HCAV+K
Sbjct: 138 LLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVK 176


>ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  143 bits (361), Expect = 1e-32
 Identities = 67/99 (67%), Positives = 81/99 (81%)
 Frame = -2

Query: 297 DVVARTTLVAAYSASGKPKLAREIFENTPLRIRDTVCYNAMITCYSHNNDGHAAIQLFND 118
           D+VARTTL+AA+S++G   LAREIF  TPL IRDTVCYNAMIT YSHNNDG  AI+LF D
Sbjct: 80  DIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRD 139

Query: 117 MRQKGFKPDDFTYTSVLGALGLIASREMHCEQLHCAVIK 1
           + + GF+PD+FT+TSVLGAL LI   E  C+Q+HCAV+K
Sbjct: 140 LLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVK 178


>ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355479792|gb|AES60995.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  137 bits (346), Expect = 7e-31
 Identities = 65/99 (65%), Positives = 78/99 (78%)
 Frame = -2

Query: 297 DVVARTTLVAAYSASGKPKLAREIFENTPLRIRDTVCYNAMITCYSHNNDGHAAIQLFND 118
           D+VARTTL++AYS+SG  KLA+++F  TPL IRDTV YNAMIT YSH NDGHAA+ LF  
Sbjct: 70  DIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQ 129

Query: 117 MRQKGFKPDDFTYTSVLGALGLIASREMHCEQLHCAVIK 1
           M++ GF PD FT++SVL AL LIA  E HC+ LHC VIK
Sbjct: 130 MKRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIK 168


Top