BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria23_contig00019933
         (275 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...   120   9e-26
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   120   9e-26
ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D sub...   109   3e-22
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...   109   3e-22
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...   105   5e-21

>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score =  120 bits (302), Expect = 9e-26
 Identities = 54/90 (60%), Positives = 70/90 (77%)
 Frame = -2

Query: 271 DDYVDFHSSDSEDELDCAMQGLDEGFLKAFCRKASTAFFDQYGLISHQINSYNDFVKYGL 92
           DDY      D +D LD A + L  GFL+ FC+KAS  FF++YG+ISHQI+SYNDF++YG+
Sbjct: 43  DDYDWDEDEDEDDNLDMAKE-LGGGFLRNFCKKASAGFFEKYGVISHQIDSYNDFIRYGI 101

Query: 91  QEVFDSIGEIMIEPNYNPSKKGDGDWRRAS 2
           Q VFDS+GEI +EP Y+PSKKG+GDW+ AS
Sbjct: 102 QRVFDSVGEIHVEPGYDPSKKGEGDWKHAS 131


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  120 bits (302), Expect = 9e-26
 Identities = 54/91 (59%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
 Frame = -2

Query: 271 DDYVDFHSSDSEDELDCAM-QGLDEGFLKAFCRKASTAFFDQYGLISHQINSYNDFVKYG 95
           DD+ +    D +D  D  + + L E FLK FC+KAST FF++YG ISHQINSYNDF+ YG
Sbjct: 33  DDWDEDEDEDEDDSHDMVLIKELGESFLKNFCKKASTGFFEKYGSISHQINSYNDFINYG 92

Query: 94  LQEVFDSIGEIMIEPNYNPSKKGDGDWRRAS 2
           +Q VFDS+GEI +EP Y+PSK+GDGDW+ AS
Sbjct: 93  IQRVFDSVGEIHVEPGYDPSKRGDGDWKHAS 123


>ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
           sativus]
          Length = 1031

 Score =  109 bits (272), Expect = 3e-22
 Identities = 49/89 (55%), Positives = 66/89 (74%), Gaps = 2/89 (2%)
 Frame = -2

Query: 262 VDFHSSDSEDELD--CAMQGLDEGFLKAFCRKASTAFFDQYGLISHQINSYNDFVKYGLQ 89
           +D  + D +D       +  L E FLK FC+K+S AFF+QYGLISHQINSYNDF+K G+Q
Sbjct: 23  MDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQ 82

Query: 88  EVFDSIGEIMIEPNYNPSKKGDGDWRRAS 2
           + FD  G+I+++P Y+PSKKGDG+WR A+
Sbjct: 83  KAFDFFGDILVQPGYDPSKKGDGEWRYAT 111


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
           sativus]
          Length = 1197

 Score =  109 bits (272), Expect = 3e-22
 Identities = 49/89 (55%), Positives = 66/89 (74%), Gaps = 2/89 (2%)
 Frame = -2

Query: 262 VDFHSSDSEDELD--CAMQGLDEGFLKAFCRKASTAFFDQYGLISHQINSYNDFVKYGLQ 89
           +D  + D +D       +  L E FLK FC+K+S AFF+QYGLISHQINSYNDF+K G+Q
Sbjct: 23  MDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQ 82

Query: 88  EVFDSIGEIMIEPNYNPSKKGDGDWRRAS 2
           + FD  G+I+++P Y+PSKKGDG+WR A+
Sbjct: 83  KAFDFFGDILVQPGYDPSKKGDGEWRYAT 111


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
           gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
           subunit, putative [Ricinus communis]
          Length = 1203

 Score =  105 bits (261), Expect = 5e-21
 Identities = 47/91 (51%), Positives = 64/91 (70%), Gaps = 4/91 (4%)
 Frame = -2

Query: 262 VDFHSSDSED----ELDCAMQGLDEGFLKAFCRKASTAFFDQYGLISHQINSYNDFVKYG 95
           +DF S    D    +   ++  + E  LK FC KA+T FF++YGLISHQINSYNDF+  G
Sbjct: 32  IDFDSDSGSDCDFMDSSTSLTDIGEAKLKDFCNKAATLFFNEYGLISHQINSYNDFINNG 91

Query: 94  LQEVFDSIGEIMIEPNYNPSKKGDGDWRRAS 2
           +Q+ FDS GE+++EP Y+PSKKG+ +WR AS
Sbjct: 92  IQKAFDSFGELVVEPGYDPSKKGENEWRYAS 122