BLASTX nr result

ID: Scutellaria23_contig00015418 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria23_contig00015418
         (433 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002303836.1| predicted protein [Populus trichocarpa] gi|2...    64   1e-08
ref|XP_002527319.1| nucleoporin, putative [Ricinus communis] gi|...    61   8e-08
ref|XP_004140177.1| PREDICTED: nuclear pore complex protein Nup9...    59   4e-07
ref|NP_178183.2| suppressor of auxin resistance 3 [Arabidopsis t...    55   5e-06
ref|XP_002889279.1| hypothetical protein ARALYDRAFT_895920 [Arab...    55   5e-06

>ref|XP_002303836.1| predicted protein [Populus trichocarpa] gi|222841268|gb|EEE78815.1|
            predicted protein [Populus trichocarpa]
          Length = 1067

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = -1

Query: 433  LSCFDTAFRAPMPDDLRSYHLQDGISLFVCYLSEMA 326
            LSCFDT  RAP+P+DLRS HLQD +SLF CYLSEMA
Sbjct: 1031 LSCFDTVLRAPIPEDLRSNHLQDAVSLFTCYLSEMA 1066


>ref|XP_002527319.1| nucleoporin, putative [Ricinus communis] gi|223533319|gb|EEF35071.1|
            nucleoporin, putative [Ricinus communis]
          Length = 1067

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 27/36 (75%), Positives = 31/36 (86%)
 Frame = -1

Query: 433  LSCFDTAFRAPMPDDLRSYHLQDGISLFVCYLSEMA 326
            LSCFDT F AP+P+DLRS +LQD +SLF CYLSEMA
Sbjct: 1031 LSCFDTIFGAPVPEDLRSNYLQDAVSLFTCYLSEMA 1066


>ref|XP_004140177.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like [Cucumis
            sativus] gi|449481026|ref|XP_004156060.1| PREDICTED:
            nuclear pore complex protein Nup98-Nup96-like [Cucumis
            sativus]
          Length = 1073

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 26/35 (74%), Positives = 29/35 (82%)
 Frame = -1

Query: 433  LSCFDTAFRAPMPDDLRSYHLQDGISLFVCYLSEM 329
            LSCFDT F APM +DLRS HLQD +SLF CYLSE+
Sbjct: 1037 LSCFDTIFSAPMREDLRSSHLQDAVSLFTCYLSEI 1071


>ref|NP_178183.2| suppressor of auxin resistance 3 [Arabidopsis thaliana]
            gi|22652299|gb|AAN03676.1|AF411839_1 putative nucleoporin
            PRECOZ [Arabidopsis thaliana] gi|61353788|gb|AAX44044.1|
            putative nucleoporin 96 [Arabidopsis thaliana]
            gi|332198315|gb|AEE36436.1| suppressor of auxin
            resistance 3 [Arabidopsis thaliana]
          Length = 1046

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = -1

Query: 433  LSCFDTAFRAPMPDDLRSYHLQDGISLFVCYLSEMAQ 323
            L+CF+TAF AP+P+D+RS HLQD +SLF  YLSE  Q
Sbjct: 1007 LTCFETAFDAPLPEDVRSTHLQDAVSLFSLYLSETGQ 1043


>ref|XP_002889279.1| hypothetical protein ARALYDRAFT_895920 [Arabidopsis lyrata subsp.
            lyrata] gi|297335120|gb|EFH65538.1| hypothetical protein
            ARALYDRAFT_895920 [Arabidopsis lyrata subsp. lyrata]
          Length = 1045

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = -1

Query: 433  LSCFDTAFRAPMPDDLRSYHLQDGISLFVCYLSEMAQ 323
            L CF+TAF AP+P+D+RS HLQD +SLF  YLSE +Q
Sbjct: 1006 LKCFETAFDAPLPEDVRSTHLQDAVSLFSLYLSETSQ 1042


Top