BLASTX nr result

ID: Scutellaria23_contig00013955 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria23_contig00013955
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277185.1| PREDICTED: ribosome biogenesis GTPase A [Vit...    57   2e-06
ref|XP_004143028.1| PREDICTED: ribosome biogenesis GTPase A-like...    55   8e-06

>ref|XP_002277185.1| PREDICTED: ribosome biogenesis GTPase A [Vitis vinifera]
           gi|297744953|emb|CBI38545.3| unnamed protein product
           [Vitis vinifera]
          Length = 369

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 28/46 (60%), Positives = 39/46 (84%)
 Frame = -3

Query: 140 IQNIGKAVKAVVKGRSSEWWYTPHMAAASRAIADRIPLVDLVLEVR 3
           I N+ K + + VK R+++ W++PHMAAASRA+++RIPLVDLVLEVR
Sbjct: 3   IANLEKRLGSGVK-RAAKTWFSPHMAAASRAVSERIPLVDLVLEVR 47


>ref|XP_004143028.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]
           gi|449482814|ref|XP_004156412.1| PREDICTED: ribosome
           biogenesis GTPase A-like [Cucumis sativus]
          Length = 366

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 28/48 (58%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
 Frame = -3

Query: 143 LIQNIGKAVKAVVKG-RSSEWWYTPHMAAASRAIADRIPLVDLVLEVR 3
           L++ IG A+  +  G R S  WY  HM AASRA+A+RIPLVD VLEVR
Sbjct: 6   LMRKIGTAINQLAAGNRISSGWYDAHMEAASRAVAERIPLVDFVLEVR 53


Top