BLASTX nr result

ID: Scutellaria23_contig00012394 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria23_contig00012394
         (391 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004140515.1| PREDICTED: pre-mRNA-processing factor 6-like...    75   7e-12
ref|XP_003540356.1| PREDICTED: pre-mRNA-processing factor 6-like...    74   9e-12
ref|XP_003543338.1| PREDICTED: pre-mRNA-processing factor 6-like...    70   1e-10
emb|CBI28774.3| unnamed protein product [Vitis vinifera]               70   2e-10
ref|XP_002267416.1| PREDICTED: pre-mRNA-processing factor 6-like...    70   2e-10

>ref|XP_004140515.1| PREDICTED: pre-mRNA-processing factor 6-like [Cucumis sativus]
           gi|449514699|ref|XP_004164455.1| PREDICTED:
           pre-mRNA-processing factor 6-like [Cucumis sativus]
          Length = 1023

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 41/88 (46%), Positives = 50/88 (56%)
 Frame = -1

Query: 268 MVFVRSPDGKTLVVNLNPSAATLKAFALHLQRNYLIPIXXXXXXXXXXXXSTKENDAVLL 89
           MVF+  P+ KTL +NLNPS  ++      ++    IPI             +  ND+ LL
Sbjct: 1   MVFLSIPNQKTLFLNLNPSTTSILNLKRAIEDVSHIPISFQRLFLSQSFQLSHFNDSTLL 60

Query: 88  SHLGISPNSTLTLHVPFLGGMQAPVAPK 5
           SHL I PNSTLTLHVP  GGMQAP  PK
Sbjct: 61  SHLRILPNSTLTLHVPLFGGMQAPTIPK 88


>ref|XP_003540356.1| PREDICTED: pre-mRNA-processing factor 6-like [Glycine max]
          Length = 1041

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
 Frame = -1

Query: 268 MVFVRSPDGKTLVVNLNPSAATLKAFALHLQRNYLIPIXXXXXXXXXXXXSTKEND---- 101
           MVF+ SP+ KT  ++LNP+  TL    L +Q+   +PI             T +ND    
Sbjct: 1   MVFIVSPNHKTFSIDLNPNTTTLHLLKLAIQQTLTLPISHQRLFLSHSRRLTADNDGSDD 60

Query: 100 AVLLSHLGISPNSTLTLHVPFLGGMQAPVAPK 5
           ++L+S LG+ P STLTLHVPFLGG   P  PK
Sbjct: 61  SLLISDLGVGPYSTLTLHVPFLGGTNPPAVPK 92


>ref|XP_003543338.1| PREDICTED: pre-mRNA-processing factor 6-like [Glycine max]
          Length = 1034

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
 Frame = -1

Query: 268 MVFVRSPDGKTLVVNLNPSAATLKAFALHLQRNYLIPIXXXXXXXXXXXXSTKEND---- 101
           MVF+ SP+ KT  +++NP+  TL    L +Q    +PI             + +ND    
Sbjct: 1   MVFIVSPNHKTFSIDINPNTTTLHLLKLAIQHILTLPISHQRLFLSHSRRLSADNDGSDD 60

Query: 100 AVLLSHLGISPNSTLTLHVPFLGGMQAPVAPK 5
           ++L+S LG+ P STLTLHVPFLGG   P  PK
Sbjct: 61  SLLISDLGVGPYSTLTLHVPFLGGTNPPAVPK 92


>emb|CBI28774.3| unnamed protein product [Vitis vinifera]
          Length = 747

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 37/88 (42%), Positives = 50/88 (56%)
 Frame = -1

Query: 268 MVFVRSPDGKTLVVNLNPSAATLKAFALHLQRNYLIPIXXXXXXXXXXXXSTKENDAVLL 89
           MVFV+S D KTL++NLNP A T +     ++R   IP+               E+   L+
Sbjct: 1   MVFVKSFDNKTLILNLNPKATTFETLKHQIERELGIPLSLQRIFLNPRRLIGDES--ALI 58

Query: 88  SHLGISPNSTLTLHVPFLGGMQAPVAPK 5
           + LG+  +S LTLH+P  GGMQAPV PK
Sbjct: 59  AELGVRSDSALTLHLPLFGGMQAPVVPK 86


>ref|XP_002267416.1| PREDICTED: pre-mRNA-processing factor 6-like [Vitis vinifera]
          Length = 1023

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 37/88 (42%), Positives = 50/88 (56%)
 Frame = -1

Query: 268 MVFVRSPDGKTLVVNLNPSAATLKAFALHLQRNYLIPIXXXXXXXXXXXXSTKENDAVLL 89
           MVFV+S D KTL++NLNP A T +     ++R   IP+               E+   L+
Sbjct: 1   MVFVKSFDNKTLILNLNPKATTFETLKHQIERELGIPLSLQRIFLNPRRLIGDES--ALI 58

Query: 88  SHLGISPNSTLTLHVPFLGGMQAPVAPK 5
           + LG+  +S LTLH+P  GGMQAPV PK
Sbjct: 59  AELGVRSDSALTLHLPLFGGMQAPVVPK 86


Top