BLASTX nr result
ID: Scutellaria23_contig00012199
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Scutellaria23_contig00012199
(963 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|2... 322 8e-86
ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I... 322 1e-85
ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabi... 317 4e-84
ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, I... 316 5e-84
ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrat... 316 5e-84
>ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|222873254|gb|EEF10385.1|
predicted protein [Populus trichocarpa]
Length = 206
Score = 322 bits (825), Expect = 8e-86
Identities = 165/206 (80%), Positives = 179/206 (86%)
Frame = -1
Query: 846 MVLPDDEITRLYRIRKTVMQILRDRGYMVTDFEIEMTKYQFLQKYGDNMKREDLVLIKGL 667
M L ++EI RL RIRKTVMQ+L+DRGY V DFEI+MT+ QF KYG+NMKREDLV+ K
Sbjct: 1 MTLTEEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTK 60
Query: 666 RNNSSEQIYVFFPEEQKVGVKTMKTYTNRMKEENVHRAILVVQQNLTPFARTCISEISSK 487
RN+SS+QIYVFFPEE KVGVKTMKTYTNRMK ENV RAILVVQQNLTPFARTCI+EIS+K
Sbjct: 61 RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120
Query: 486 FQLEVFQEAELLVNIKDHVLVPEHQXXXXXXXXXXXERYTVKETQLPRIQITDPIARYYG 307
F LEVFQEAELLVNIK+HVLVPEHQ ERYTVKETQLPRIQITDPIARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQITDPIARYYG 180
Query: 306 LKRGQVVKIIRPSETAGRYVTYRYVV 229
LKRGQVVKIIRPSETAGRYVTYRYV+
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVI 206
>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Vitis vinifera]
gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 isoform 2
[Vitis vinifera]
Length = 206
Score = 322 bits (824), Expect = 1e-85
Identities = 161/206 (78%), Positives = 181/206 (87%)
Frame = -1
Query: 846 MVLPDDEITRLYRIRKTVMQILRDRGYMVTDFEIEMTKYQFLQKYGDNMKREDLVLIKGL 667
M ++EI+RL+RIRKTVMQ+L+DRGY V DFEI MTK+QF+ K+G+NMKREDLV+ K
Sbjct: 1 MSASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAK 60
Query: 666 RNNSSEQIYVFFPEEQKVGVKTMKTYTNRMKEENVHRAILVVQQNLTPFARTCISEISSK 487
R +SS+QIYVFFPEEQKVGVKTMKTYTNRMK ENV RAILVVQQNLTPFARTCI+EIS+K
Sbjct: 61 RTDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120
Query: 486 FQLEVFQEAELLVNIKDHVLVPEHQXXXXXXXXXXXERYTVKETQLPRIQITDPIARYYG 307
F LEVFQEAELLVNIK+HVLVPEHQ ERYTVKETQLPRIQ++DPIARY+G
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVSDPIARYFG 180
Query: 306 LKRGQVVKIIRPSETAGRYVTYRYVV 229
LKRGQVVKIIRPSETAGRY+TYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYITYRYVV 206
>ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
II and III 24.3 kDa subunit [Arabidopsis thaliana]
gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
[Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
II and III 24.3 kDa subunit [Arabidopsis thaliana]
gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
24.3 kDa subunit [Arabidopsis thaliana]
gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
24.3 kDa subunit [Arabidopsis thaliana]
gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
II subunit E [Arabidopsis thaliana]
Length = 205
Score = 317 bits (811), Expect = 4e-84
Identities = 156/205 (76%), Positives = 179/205 (87%)
Frame = -1
Query: 843 VLPDDEITRLYRIRKTVMQILRDRGYMVTDFEIEMTKYQFLQKYGDNMKREDLVLIKGLR 664
+L ++E+ RLYRI+KT+MQ+LRDRGY + D E+ MTK QF++K+GDNMKREDLV +K R
Sbjct: 1 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60
Query: 663 NNSSEQIYVFFPEEQKVGVKTMKTYTNRMKEENVHRAILVVQQNLTPFARTCISEISSKF 484
N++S+Q+Y+FFP+E KVGVKTMK YTNRMK ENV RAILVVQQNLTPFARTCISEISSKF
Sbjct: 61 NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120
Query: 483 QLEVFQEAELLVNIKDHVLVPEHQXXXXXXXXXXXERYTVKETQLPRIQITDPIARYYGL 304
LEVFQEAE+LVNIK+HVLVPEHQ ERYTVKETQLPRIQ+TDPIARY+GL
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180
Query: 303 KRGQVVKIIRPSETAGRYVTYRYVV 229
KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205
>ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 207
Score = 316 bits (810), Expect = 5e-84
Identities = 161/207 (77%), Positives = 178/207 (85%), Gaps = 1/207 (0%)
Frame = -1
Query: 846 MVLPDDEITRLYRIRKTVMQILRDRGYMVTDFEIEMTKYQFLQKYGDNMKREDLVLIKGL 667
MVL ++EITRL+RIRKTV Q+LRDRGY V DFEI+MT+ QF QKYG+NMKRED+V+ K
Sbjct: 1 MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
Query: 666 RNNSSEQIYVFFPEEQKVGVKTMKTYTNRMKEENVHRAILVVQQNLTPFARTCISEISSK 487
RN+SS+QIYVFFPEE KVG+K +KTYT RMK ENV RAILVVQQNLTPFAR C+SE +SK
Sbjct: 61 RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
Query: 486 -FQLEVFQEAELLVNIKDHVLVPEHQXXXXXXXXXXXERYTVKETQLPRIQITDPIARYY 310
F LEVFQEAELLVNIKDHVLVPEHQ ERYTVKETQLPRIQ+TDP+ARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180
Query: 309 GLKRGQVVKIIRPSETAGRYVTYRYVV 229
GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207
>ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis
lyrata subsp. lyrata]
Length = 205
Score = 316 bits (810), Expect = 5e-84
Identities = 156/205 (76%), Positives = 180/205 (87%)
Frame = -1
Query: 843 VLPDDEITRLYRIRKTVMQILRDRGYMVTDFEIEMTKYQFLQKYGDNMKREDLVLIKGLR 664
+L ++EI RLYRI+KT+MQ+L+DRGY + D E+ MTK QF++K+GDNMKREDLV +K R
Sbjct: 1 MLTEEEIKRLYRIQKTLMQMLKDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKVKR 60
Query: 663 NNSSEQIYVFFPEEQKVGVKTMKTYTNRMKEENVHRAILVVQQNLTPFARTCISEISSKF 484
N++S+Q+Y+FFP+E KVGVKTMK YTNRMK ENV+RAILVVQQNLTPFARTCISEISSKF
Sbjct: 61 NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVYRAILVVQQNLTPFARTCISEISSKF 120
Query: 483 QLEVFQEAELLVNIKDHVLVPEHQXXXXXXXXXXXERYTVKETQLPRIQITDPIARYYGL 304
LEVFQEAE+LVNIK+HVLVPEHQ ERYTVKETQLPRIQ+TDPIARY+GL
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180
Query: 303 KRGQVVKIIRPSETAGRYVTYRYVV 229
KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205