BLASTX nr result

ID: Scutellaria23_contig00012158 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria23_contig00012158
         (1262 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002330570.1| high mobility group family [Populus trichoca...   342   9e-92
ref|XP_002531766.1| transcription factor, putative [Ricinus comm...   338   2e-90
ref|XP_002264357.1| PREDICTED: high mobility group B protein 10 ...   326   7e-87
ref|NP_566454.1| high mobility group-box and ARID domain-binding...   296   6e-78
ref|XP_002884962.1| high mobility group family protein [Arabidop...   292   1e-76

>ref|XP_002330570.1| high mobility group family [Populus trichocarpa]
           gi|222872128|gb|EEF09259.1| high mobility group family
           [Populus trichocarpa]
          Length = 316

 Score =  342 bits (878), Expect = 9e-92
 Identities = 172/286 (60%), Positives = 218/286 (76%), Gaps = 7/286 (2%)
 Frame = +2

Query: 74  YLTYPKPEAEYQEIIQNSDLFLQKLRAFHVFYATKFRVPTIGGSSLDLHRLFLEVTSRGG 253
           + +YP   A+Y++I Q+SDLF +KL+AFH  + TKF VPT+GG +LDLH LF+EVTSRGG
Sbjct: 28  FRSYPPATAKYEDIAQSSDLFWEKLKAFHQSFGTKFMVPTVGGKALDLHHLFVEVTSRGG 87

Query: 254 IEKVIRERRWKEITGSFNFPTSITSASFVLRKYYLSLLYHFEQVYYFRKEEPSVSAA--- 424
           IEKVI +R+WKE+  +FNFPT+ITSASFVLRK+YLSLLYHFEQVY+F K+ P VS     
Sbjct: 88  IEKVITDRKWKEVITAFNFPTTITSASFVLRKHYLSLLYHFEQVYHFNKQIPLVSGTDAM 147

Query: 425 -GLSLPYG---VDDGAASDKFSASSILEDGGLVTGIIDGKFDDGYLVTVKLGSEDLKGVL 592
            G SL  G   +++GA +++FS+S  L+ G  V+GIIDGKFD+GYLVTV LG+  LKGVL
Sbjct: 148 NGRSLVNGSATLEEGAITNQFSSSQQLQIGCSVSGIIDGKFDNGYLVTVNLGTNQLKGVL 207

Query: 593 YHSPLERDASQGFSTFEDTAHLTRRKHQTAFRDPTHPKRNRSGYTFFFAEQYQRLRPSYH 772
           YH P     SQ   + +      R++ + A RDP+ PK NRSGY FFF E Y +L+P +H
Sbjct: 208 YHIPHTFHESQDSRSSDLPPRRRRKRSRLALRDPSQPKSNRSGYNFFFTEHYAQLKPLHH 267

Query: 773 GQERAISKKIGQLWSNLSEAEKQVYQEKGLRDKERYKAEMLEYKSS 910
           GQE+ ISKKIG LW+NL+EAEKQVYQEKGLRDKE+Y+ EMLEY+SS
Sbjct: 268 GQEKVISKKIGLLWNNLTEAEKQVYQEKGLRDKEKYRNEMLEYRSS 313


>ref|XP_002531766.1| transcription factor, putative [Ricinus communis]
           gi|223528602|gb|EEF30622.1| transcription factor,
           putative [Ricinus communis]
          Length = 313

 Score =  338 bits (867), Expect = 2e-90
 Identities = 164/284 (57%), Positives = 213/284 (75%), Gaps = 5/284 (1%)
 Frame = +2

Query: 74  YLTYPKPEAEYQEIIQNSDLFLQKLRAFHVFYATKFRVPTIGGSSLDLHRLFLEVTSRGG 253
           + +YP P A++++++Q+SDLF +KL++FH  + TKF VPT+GG +LDLH LF+EVTSRGG
Sbjct: 27  FRSYPSPTAQFEDVVQSSDLFWEKLKSFHKSFGTKFMVPTVGGKALDLHHLFVEVTSRGG 86

Query: 254 IEKVIRERRWKEITGSFNFPTSITSASFVLRKYYLSLLYHFEQVYYFRKEEPSVSAA--- 424
           +EKV+R+R+WKE+  +FNFP++ITSASFVLRKYYLSLLYHFEQVY F K+ PSVS +   
Sbjct: 87  LEKVVRDRKWKEVIAAFNFPSTITSASFVLRKYYLSLLYHFEQVYQFHKQVPSVSVSDDV 146

Query: 425 --GLSLPYGVDDGAASDKFSASSILEDGGLVTGIIDGKFDDGYLVTVKLGSEDLKGVLYH 598
              L       +G   ++F  SS L+ G  V G IDGKFD+GYL+TV LGSE LKGVLYH
Sbjct: 147 NGNLVNGSATVEGVTVNQFPGSSQLQLGSSVNGTIDGKFDNGYLITVTLGSEQLKGVLYH 206

Query: 599 SPLERDASQGFSTFEDTAHLTRRKHQTAFRDPTHPKRNRSGYTFFFAEQYQRLRPSYHGQ 778
            P E   SQ     +      R++ +   RDP+ PK +RSGY FFFAE Y +L+P ++GQ
Sbjct: 207 IPNEFYMSQSSHNSDLPPRRHRKRSRLLLRDPSRPKSHRSGYNFFFAEHYAQLKPLHYGQ 266

Query: 779 ERAISKKIGQLWSNLSEAEKQVYQEKGLRDKERYKAEMLEYKSS 910
           E+ ISKKIG LW+NL+EAEK++YQEKGL+DKERYK EMLEY+SS
Sbjct: 267 EKVISKKIGLLWNNLTEAEKEIYQEKGLKDKERYKNEMLEYRSS 310


>ref|XP_002264357.1| PREDICTED: high mobility group B protein 10 [Vitis vinifera]
           gi|296090037|emb|CBI39856.3| unnamed protein product
           [Vitis vinifera]
          Length = 331

 Score =  326 bits (836), Expect = 7e-87
 Identities = 168/286 (58%), Positives = 208/286 (72%), Gaps = 10/286 (3%)
 Frame = +2

Query: 83  YPKPEAEYQEIIQNSDLFLQKLRAFHVFYATKFRVPTIGGSSLDLHRLFLEVTSRGGIEK 262
           YP+  A+YQE++Q++DLF Q L+ FH  + TKF VPT GG +LDLHRLF+EVTSRGG+EK
Sbjct: 40  YPEAAAQYQEVVQSADLFWQTLKDFHRSFGTKFMVPTTGGKALDLHRLFVEVTSRGGLEK 99

Query: 263 VIRERRWKEITGSFNFPTSITSASFVLRKYYLSLLYHFEQVYYFRKEEPSVSAA------ 424
           VIR+R+WKE+T  F FPT+ITSASFVLRKYYLSLL+H+EQVYYFRK+   +S A      
Sbjct: 100 VIRDRKWKEVTTVFKFPTTITSASFVLRKYYLSLLHHYEQVYYFRKQSFPISMADPLNSS 159

Query: 425 ---GLSLPYGVDDGAASDKFSASSILEDGGLVTGIIDGKFDDGYLVTVKLGSEDLKGVLY 595
              G +      D A ++    S  L+ G LVTG IDGKFD+GYLV+V LGS+ LKGVLY
Sbjct: 160 PINGSATTPVFQDSATTNDLPVSPRLQPGCLVTGTIDGKFDNGYLVSVNLGSDVLKGVLY 219

Query: 596 HSP-LERDASQGFSTFEDTAHLTRRKHQTAFRDPTHPKRNRSGYTFFFAEQYQRLRPSYH 772
           H P  E   S+  +          ++ Q A RDP+ PKR++SGY FFFAE Y RL+P Y 
Sbjct: 220 HIPNNESHMSRSSNASAVPPPRNWKRSQLALRDPSRPKRSQSGYNFFFAENYARLKPLYS 279

Query: 773 GQERAISKKIGQLWSNLSEAEKQVYQEKGLRDKERYKAEMLEYKSS 910
           GQERAISKKIG LW+ L++AEKQVYQEKG+ DKERYK EMLEY+S+
Sbjct: 280 GQERAISKKIGFLWNRLTDAEKQVYQEKGMIDKERYKTEMLEYRSA 325


>ref|NP_566454.1| high mobility group-box and ARID domain-binding domain-containing
           protein [Arabidopsis thaliana]
           gi|75274126|sp|Q9LTT3.1|HMG10_ARATH RecName: Full=High
           mobility group B protein 10; AltName:
           Full=Nucleosome/chromatin assembly factor group D 10
           gi|13605513|gb|AAK32750.1|AF361582_1 AT3g13350/MDC11_14
           [Arabidopsis thaliana] gi|9294541|dbj|BAB02804.1| high
           mobility group protein-like [Arabidopsis thaliana]
           gi|21593357|gb|AAM65306.1| unknown [Arabidopsis
           thaliana] gi|22137084|gb|AAM91387.1| At3g13350/MDC11_14
           [Arabidopsis thaliana] gi|332641816|gb|AEE75337.1| high
           mobility group-box and ARID domain-binding
           domain-containing protein [Arabidopsis thaliana]
          Length = 319

 Score =  296 bits (759), Expect = 6e-78
 Identities = 157/309 (50%), Positives = 210/309 (67%), Gaps = 7/309 (2%)
 Frame = +2

Query: 32  TFLNKMSNHPSPTKYLTYPKPEAEYQEIIQNSDLFLQKLRAFHVFYATKFRVPTIGGSSL 211
           T +  ++ +PS  K        A+Y ++++NS LF +KLRAF    +   +VPT+GG++L
Sbjct: 12  THVEPVNGYPSDNKRCDDSSVPAKYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTL 71

Query: 212 DLHRLFLEVTSRGGIEKVIRERRWKEITGSFNFPTSITSASFVLRKYYLSLLYHFEQVYY 391
           DLHRLF+EVTSRGGIE+V+++R+WKE+ G+F+FPT+ITSASFVLRKYYL  L+  E VYY
Sbjct: 72  DLHRLFIEVTSRGGIERVVKDRKWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYY 131

Query: 392 FRKEEPSVSAAGLSLPYGVDDGAASDKFSASSILEDGGLVTGIIDGKFDDGYLVTVKLGS 571
             K   S+ +   +L    ++    ++       + G  V G IDGKFD GYLVT+KLGS
Sbjct: 132 LEKPVSSLQSTDEALKSLANESPNPEE--GIDEPQVGYEVQGFIDGKFDSGYLVTMKLGS 189

Query: 572 EDLKGVLYHSPLERDASQGFSTFEDTAHLT-------RRKHQTAFRDPTHPKRNRSGYTF 730
           ++LKGVLYH P  +  SQ   T E  + +        R+K + A  D   PK +RSGY F
Sbjct: 190 QELKGVLYHIP--QTPSQSQQTMETPSAIVQSSQRRHRKKSKLAVVDTQKPKCHRSGYNF 247

Query: 731 FFAEQYQRLRPSYHGQERAISKKIGQLWSNLSEAEKQVYQEKGLRDKERYKAEMLEYKSS 910
           FFAEQY RL+P YHGQER+I+KKIG +WSNL+E+EKQVYQ+KG++D ERY+ EMLEYKSS
Sbjct: 248 FFAEQYARLKPEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYKSS 307

Query: 911 QHVQG*HAS 937
            H  G  AS
Sbjct: 308 -HESGATAS 315


>ref|XP_002884962.1| high mobility group family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297330802|gb|EFH61221.1| high mobility group
           family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 318

 Score =  292 bits (747), Expect = 1e-76
 Identities = 152/307 (49%), Positives = 207/307 (67%), Gaps = 5/307 (1%)
 Frame = +2

Query: 32  TFLNKMSNHPSPTKYLTYPKPEAEYQEIIQNSDLFLQKLRAFHVFYATKFRVPTIGGSSL 211
           T +  ++ +PS  K        A+Y ++++NS LF  KLRA     +   +VPT+GG++L
Sbjct: 11  THVEPVNGYPSDNKRRDDSSAPAKYDDLVRNSALFWDKLRAVLGLTSQTLKVPTVGGNTL 70

Query: 212 DLHRLFLEVTSRGGIEKVIRERRWKEITGSFNFPTSITSASFVLRKYYLSLLYHFEQVYY 391
           DLHRLF+EVTSRGGIE+V+++R+WK++ G+F+FPT+ITSASFVLRKYYL  L+  E VYY
Sbjct: 71  DLHRLFIEVTSRGGIERVVKDRKWKDVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYY 130

Query: 392 FRKEEPSVSAAGLSLPYGVDDGAASDKFSASSILEDGGLVTGIIDGKFDDGYLVTVKLGS 571
             K   S+ +   ++    ++    ++       + G  V G IDGKFD+GYLVT+KLGS
Sbjct: 131 LEKPVSSIQSTDEAMKSLANESPNPEE--GIDEPQVGYEVQGFIDGKFDNGYLVTMKLGS 188

Query: 572 EDLKGVLYHSPLERDASQ-----GFSTFEDTAHLTRRKHQTAFRDPTHPKRNRSGYTFFF 736
           ++LKGV+YH P     SQ       +T   +    R+K + A  D   PK +RSGY FFF
Sbjct: 189 QELKGVIYHIPQTPSQSQQTMETASATVPSSQRRHRKKSKLAVVDNQKPKCHRSGYNFFF 248

Query: 737 AEQYQRLRPSYHGQERAISKKIGQLWSNLSEAEKQVYQEKGLRDKERYKAEMLEYKSSQH 916
           AEQY RL+P YHGQER+I+KKIG +WSNL+E+EKQVYQ+KG++D ERY+ EMLEYKSS H
Sbjct: 249 AEQYARLKPEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYKSS-H 307

Query: 917 VQG*HAS 937
             G  AS
Sbjct: 308 ESGATAS 314


Top