BLASTX nr result
ID: Scutellaria23_contig00012138
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Scutellaria23_contig00012138
(531 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containi... 100 4e-31
ref|XP_003595326.1| Pentatricopeptide repeat-containing protein ... 94 9e-26
ref|NP_199192.1| pentatricopeptide repeat-containing protein [Ar... 92 2e-24
ref|XP_003555290.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 97 4e-24
ref|XP_002863633.1| pentatricopeptide repeat-containing protein ... 90 8e-23
>ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Glycine max]
Length = 591
Score = 100 bits (250), Expect(3) = 4e-31
Identities = 51/104 (49%), Positives = 67/104 (64%), Gaps = 11/104 (10%)
Frame = -2
Query: 530 PNLSIFLCNTLISCFTQK-----------DQVLCDPNIEPNNYTYPSLFKAFGACQWLKH 384
PN ++FL NTLIS T + +L ++PN++T+PSLFKA + WL+H
Sbjct: 63 PNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQH 122
Query: 383 GQALHAHVLKFLQPSYDNLVQASLLSFYSKCGRVGVASYFIDQI 252
G LHAHVLKFLQP YD VQ SLL+FY+K G++ V+ Y DQI
Sbjct: 123 GPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQI 166
Score = 55.1 bits (131), Expect(3) = 4e-31
Identities = 35/71 (49%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Frame = -1
Query: 249 EPNLAAWNSVLTACAXXXXXXXXXXXXXS----LEVLDLFFLMQKSLVKPNEVTLVALIT 82
EP+LA WN++L A A LE L LF MQ S +KPNEVTLVALI+
Sbjct: 168 EPDLATWNTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALIS 227
Query: 81 ARTELGALSLG 49
A + LGALS G
Sbjct: 228 ACSNLGALSQG 238
Score = 24.3 bits (51), Expect(3) = 4e-31
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = -2
Query: 56 AWAM-YIIRNKLSLNHFI 6
AWA Y++RN L LN F+
Sbjct: 239 AWAHGYVLRNNLKLNRFV 256
>ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484374|gb|AES65577.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 740
Score = 94.4 bits (233), Expect(3) = 9e-26
Identities = 50/106 (47%), Positives = 70/106 (66%), Gaps = 14/106 (13%)
Frame = -2
Query: 527 NLSIFLCNTLIS-------------CFTQKDQVLCDPNIEPNNYTYPSLFKAFGACQ-WL 390
N +IFL NTLIS F+ +++L + N++PN++T+PSLFKA + Q W
Sbjct: 208 NPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACCSNQSWF 267
Query: 389 KHGQALHAHVLKFLQPSYDNLVQASLLSFYSKCGRVGVASYFIDQI 252
+G LH HVLKFLQP +DN VQASLL+FY+K G++ V+ Y D+I
Sbjct: 268 HYGPLLHTHVLKFLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRI 313
Score = 46.6 bits (109), Expect(3) = 9e-26
Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = -1
Query: 249 EPNLAAWNSVLTACAXXXXXXXXXXXXXS----LEVLDLFFLMQKSLVKPNEVTLVALIT 82
EP+LA WN +L A A LE L LF MQ ++PNEVT+VALI+
Sbjct: 315 EPDLATWNVILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALIS 374
Query: 81 ARTELGALSLG 49
A + LGA+S G
Sbjct: 375 ACSNLGAVSQG 385
Score = 21.2 bits (43), Expect(3) = 9e-26
Identities = 5/13 (38%), Positives = 11/13 (84%)
Frame = -2
Query: 44 YIIRNKLSLNHFI 6
+++RNK+ +N F+
Sbjct: 391 FVLRNKIKMNRFV 403
>ref|NP_199192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75262420|sp|Q9FG85.1|PP415_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g43790 gi|10177948|dbj|BAB11307.1| unnamed protein
product [Arabidopsis thaliana]
gi|332007627|gb|AED95010.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 460
Score = 92.4 bits (228), Expect(3) = 2e-24
Identities = 52/111 (46%), Positives = 70/111 (63%), Gaps = 17/111 (15%)
Frame = -2
Query: 530 PNLSIFLCNTLIS-------------CFTQKDQVLCDPN--IEPNNYTYPSLFKAFGA-C 399
PN S+FL NTLIS F+ DQ+L + + PN +TYPSLFKA G
Sbjct: 67 PNPSVFLYNTLISSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSLFKASGFDA 126
Query: 398 QWLKHGQALHAHVLKFLQP-SYDNLVQASLLSFYSKCGRVGVASYFIDQIR 249
QW +HG+ALHAHVLKFL+P ++D VQA+L+ FY+ CG++ A ++IR
Sbjct: 127 QWHRHGRALHAHVLKFLEPVNHDRFVQAALVGFYANCGKLREARSLFERIR 177
Score = 42.4 bits (98), Expect(3) = 2e-24
Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = -1
Query: 252 KEPNLAAWNSVLTACAXXXXXXXXXXXXXSLEVLDLFFLMQKSLVKPNEVTLVALITART 73
+EP+LA WN++L A A EVL LF MQ V+PNE++LVALI +
Sbjct: 177 REPDLATWNTLLAAYANSEEIDSDE------EVLLLFMRMQ---VRPNELSLVALIKSCA 227
Query: 72 ELGALSLG---HVY 40
LG G HVY
Sbjct: 228 NLGEFVRGVWAHVY 241
Score = 23.1 bits (48), Expect(3) = 2e-24
Identities = 8/17 (47%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Frame = -2
Query: 53 WA-MYIIRNKLSLNHFI 6
WA +Y+++N L+LN F+
Sbjct: 237 WAHVYVLKNNLTLNQFV 253
>ref|XP_003555290.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g43790-like [Glycine max]
Length = 516
Score = 97.4 bits (241), Expect(2) = 4e-24
Identities = 49/104 (47%), Positives = 67/104 (64%), Gaps = 11/104 (10%)
Frame = -2
Query: 530 PNLSIFLCNTLISCFTQK-----------DQVLCDPNIEPNNYTYPSLFKAFGACQWLKH 384
P+ ++FL NTLIS T + +L ++PN++T+PSLFKA + WL+H
Sbjct: 61 PSPTLFLYNTLISSLTHHSDQIHLALSLYNHILTHNTLQPNSFTFPSLFKACASHPWLQH 120
Query: 383 GQALHAHVLKFLQPSYDNLVQASLLSFYSKCGRVGVASYFIDQI 252
G LHAHVLKFLQP YD VQ SLL+FY+K G++ V+ Y +QI
Sbjct: 121 GPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLXVSRYLFNQI 164
Score = 38.9 bits (89), Expect(2) = 4e-24
Identities = 26/70 (37%), Positives = 33/70 (47%)
Frame = -1
Query: 249 EPNLAAWNSVLTACAXXXXXXXXXXXXXSLEVLDLFFLMQKSLVKPNEVTLVALITARTE 70
EP+LA WN++L S +KPNEVT VALI+A +
Sbjct: 166 EPDLATWNTMLL-----------------------------SQIKPNEVTPVALISACSN 196
Query: 69 LGALSLGHVY 40
LGALS G +Y
Sbjct: 197 LGALSQGDMY 206
>ref|XP_002863633.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297309468|gb|EFH39892.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 460
Score = 90.1 bits (222), Expect(2) = 8e-23
Identities = 50/111 (45%), Positives = 70/111 (63%), Gaps = 17/111 (15%)
Frame = -2
Query: 530 PNLSIFLCNTLIS-------------CFTQKDQVLCDPN--IEPNNYTYPSLFKAFG-AC 399
PN S+FL NTLIS F+ DQ+L + + PN +TYPSLFKA G
Sbjct: 67 PNPSVFLYNTLISSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSLFKASGFET 126
Query: 398 QWLKHGQALHAHVLKFLQP-SYDNLVQASLLSFYSKCGRVGVASYFIDQIR 249
+W +HG+ALHAHVLKF++P ++D VQA+L+ FY+ CG + A +++IR
Sbjct: 127 KWHRHGRALHAHVLKFIEPVNHDRFVQAALVGFYANCGELREARSLLERIR 177
Score = 42.0 bits (97), Expect(2) = 8e-23
Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = -1
Query: 252 KEPNLAAWNSVLTACAXXXXXXXXXXXXXSLEVLDLFFLMQKSLVKPNEVTLVALITART 73
+EP+LA WN++L A A EVL LF MQ V+PNE++LVALI +
Sbjct: 177 REPDLATWNTLLAAYANSEETESDE------EVLKLFVRMQ---VRPNELSLVALIKSCA 227
Query: 72 ELGALSLG---HVY 40
LG G HVY
Sbjct: 228 NLGEFWGGVWAHVY 241