BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria23_contig00012085
         (491 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_187644.1| transcription initiation factor IIB-2 [Arabidop...    58   5e-13
ref|XP_002882661.1| transcription initiation factor IIB-2 [Arabi...    58   5e-13
emb|CAA84309.1| AtTFIIB2 [Arabidopsis thaliana]                        58   5e-13
ref|XP_003625123.1| Transcription initiation factor IIB [Medicag...    57   6e-13
ref|XP_002308933.1| predicted protein [Populus trichocarpa] gi|2...    57   6e-13

>ref|NP_187644.1| transcription initiation factor IIB-2 [Arabidopsis thaliana]
           gi|21363045|sp|Q9SS44.1|TF2B2_ARATH RecName:
           Full=Transcription initiation factor IIB-2; AltName:
           Full=General transcription factor TFIIB-2;
           Short=AtTFIIB2 gi|6056193|gb|AAF02810.1|AC009400_6
           transcription initiation factor IIB (TFIIB) [Arabidopsis
           thaliana] gi|15215784|gb|AAK91437.1| AT3g10330/F14P13_7
           [Arabidopsis thaliana] gi|16974427|gb|AAL31139.1|
           AT3g10330/F14P13_7 [Arabidopsis thaliana]
           gi|21593436|gb|AAM65403.1| transcription initiation
           factor IIB (TFIIB) [Arabidopsis thaliana]
           gi|39545880|gb|AAR28003.1| TFIIB2 [Arabidopsis thaliana]
           gi|332641371|gb|AEE74892.1| transcription initiation
           factor IIB-2 [Arabidopsis thaliana]
          Length = 312

 Score = 57.8 bits (138), Expect(2) = 5e-13
 Identities = 31/55 (56%), Positives = 38/55 (69%)
 Frame = -3

Query: 483 DFDXXXXXXXXXXXXIFMITQLSSDKDAKKPLRDISIATTVAEGTIKNAYRDLYP 319
           +FD            I++ITQLS   D KKPLRDIS+AT VAEGTI+N+Y+DLYP
Sbjct: 239 EFDIRRSPISIAAAVIYIITQLS---DEKKPLRDISVATGVAEGTIRNSYKDLYP 290



 Score = 41.2 bits (95), Expect(2) = 5e-13
 Identities = 17/22 (77%), Positives = 18/22 (81%)
 Frame = -2

Query: 247 HAAKIIPEWYAKERDLKNLSSP 182
           H +KIIP WYAKE DLKNL SP
Sbjct: 291 HLSKIIPAWYAKEEDLKNLQSP 312


>ref|XP_002882661.1| transcription initiation factor IIB-2 [Arabidopsis lyrata subsp.
           lyrata] gi|297328501|gb|EFH58920.1| transcription
           initiation factor IIB-2 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 312

 Score = 57.8 bits (138), Expect(2) = 5e-13
 Identities = 31/55 (56%), Positives = 38/55 (69%)
 Frame = -3

Query: 483 DFDXXXXXXXXXXXXIFMITQLSSDKDAKKPLRDISIATTVAEGTIKNAYRDLYP 319
           +FD            I++ITQLS   D KKPLRDIS+AT VAEGTI+N+Y+DLYP
Sbjct: 239 EFDIRRSPISIAAAVIYIITQLS---DEKKPLRDISVATGVAEGTIRNSYKDLYP 290



 Score = 41.2 bits (95), Expect(2) = 5e-13
 Identities = 17/22 (77%), Positives = 18/22 (81%)
 Frame = -2

Query: 247 HAAKIIPEWYAKERDLKNLSSP 182
           H +KIIP WYAKE DLKNL SP
Sbjct: 291 HLSKIIPAWYAKEEDLKNLQSP 312


>emb|CAA84309.1| AtTFIIB2 [Arabidopsis thaliana]
          Length = 301

 Score = 57.8 bits (138), Expect(2) = 5e-13
 Identities = 31/55 (56%), Positives = 38/55 (69%)
 Frame = -3

Query: 483 DFDXXXXXXXXXXXXIFMITQLSSDKDAKKPLRDISIATTVAEGTIKNAYRDLYP 319
           +FD            I++ITQLS   D KKPLRDIS+AT VAEGTI+N+Y+DLYP
Sbjct: 228 EFDIRRSPISIAAAVIYIITQLS---DEKKPLRDISVATGVAEGTIRNSYKDLYP 279



 Score = 41.2 bits (95), Expect(2) = 5e-13
 Identities = 17/22 (77%), Positives = 18/22 (81%)
 Frame = -2

Query: 247 HAAKIIPEWYAKERDLKNLSSP 182
           H +KIIP WYAKE DLKNL SP
Sbjct: 280 HLSKIIPAWYAKEEDLKNLQSP 301


>ref|XP_003625123.1| Transcription initiation factor IIB [Medicago truncatula]
           gi|355500138|gb|AES81341.1| Transcription initiation
           factor IIB [Medicago truncatula]
          Length = 313

 Score = 57.0 bits (136), Expect(2) = 6e-13
 Identities = 30/55 (54%), Positives = 38/55 (69%)
 Frame = -3

Query: 483 DFDXXXXXXXXXXXXIFMITQLSSDKDAKKPLRDISIATTVAEGTIKNAYRDLYP 319
           +FD            I++ITQLS DK   KPL+DIS+AT VAEGTI+N+Y+DLYP
Sbjct: 240 EFDIRRSPISIAAAVIYIITQLSDDK---KPLKDISVATGVAEGTIRNSYKDLYP 291



 Score = 41.6 bits (96), Expect(2) = 6e-13
 Identities = 17/22 (77%), Positives = 18/22 (81%)
 Frame = -2

Query: 247 HAAKIIPEWYAKERDLKNLSSP 182
           H +KIIP WYAKE DLKNL SP
Sbjct: 292 HVSKIIPNWYAKEEDLKNLCSP 313


>ref|XP_002308933.1| predicted protein [Populus trichocarpa] gi|222854909|gb|EEE92456.1|
           predicted protein [Populus trichocarpa]
          Length = 312

 Score = 57.4 bits (137), Expect(2) = 6e-13
 Identities = 28/39 (71%), Positives = 34/39 (87%)
 Frame = -3

Query: 435 FMITQLSSDKDAKKPLRDISIATTVAEGTIKNAYRDLYP 319
           ++ITQLS DK   KPLRDIS+AT VAEGTI+N+Y+DLYP
Sbjct: 255 YIITQLSDDK---KPLRDISLATGVAEGTIRNSYKDLYP 290



 Score = 41.2 bits (95), Expect(2) = 6e-13
 Identities = 17/22 (77%), Positives = 18/22 (81%)
 Frame = -2

Query: 247 HAAKIIPEWYAKERDLKNLSSP 182
           H +KIIP WYA E DLKNLSSP
Sbjct: 291 HVSKIIPAWYANEEDLKNLSSP 312