BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria23_contig00006898
         (3805 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...  1551   0.0  
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...  1550   0.0  
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]      1549   0.0  
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...  1546   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...  1504   0.0  

>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score = 1551 bits (4015), Expect = 0.0
 Identities = 763/1099 (69%), Positives = 898/1099 (81%), Gaps = 6/1099 (0%)
 Frame = +2

Query: 218  MGKTIQVSGFPHRIEAKVLRRFLEEYTGQGTVVALEVKTMKRGSRAYARVQFTDSTCAET 397
            MGKTIQV GFP+ + A+ ++ FLE +TG GTV ALEVK  K G RA+A+VQF ++  AE 
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEI 60

Query: 398  IIDLANRRLYYGSSFLKAWPWEGDMIPNPRTFTSEMEGITLNFGCQISKQKFSVLWSGSD 577
            IIDLA++ LYYG S+LKAW  +   I  PRT+   M+G+TLNFGCQIS +KF+VL S   
Sbjct: 61   IIDLASKGLYYGPSYLKAWEMK-TYIVQPRTYVQHMDGVTLNFGCQISDKKFAVLGS-KV 118

Query: 578  VSVKFGTGLKKMHFYLSHNSVEYRLQLSYENIWQIVLYNLRSRTAKFLLIQLFGGPRVYK 757
            VS+KFG GLKK++F+LS+ S +Y+LQLSYENIWQ+VL+    + A+FLL+QL G PR+YK
Sbjct: 119  VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPRIYK 178

Query: 758  KLGDSIYSYFRQTQDDQWVRTTDFTPSCIGQSSGLCLQLPHGMRLPNFRDNFAYYTESED 937
            +L DS YS+F++T DDQWVRTTDFTPS IG SS LCL+  +G+RLPNF ++F YY ES +
Sbjct: 179  RLEDSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEFHNGVRLPNFSESFFYYKESAN 238

Query: 938  TLVLQNGVPFS---EDLPLVPIVKPPRGHELPFRILFKVCCLVQTGCLPGPKLGTRFFQL 1108
             ++LQ G  FS   + L LVPIV  P G ELP++ILFK+  L+Q GC PG  L   FFQL
Sbjct: 239  QVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQL 298

Query: 1109 VNPQIFDLKYIEHALEKLYYLKECCYDPVAWLIEQYQKYQANIEQPKPPAINLDEGLVYV 1288
            V+P+  ++  IEHALEKLYYLKECCYDPV WL EQY +Y    + PK P+I LD+GLVYV
Sbjct: 299  VDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLVYV 358

Query: 1289 RRVQVTPTKVYFAGPEVNVSNRVLRAFHDHIDNFLRVSFVDEEWDKMYSTDLSPRVAAGG 1468
            RRV VTP KVYF GPEVNVSNRVLR + + IDNFLRVSFVDEEW+K++STDL PR + G 
Sbjct: 359  RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRASTG- 417

Query: 1469 ENG-RTQLYQRILSTLRDGIQIGRKKFDFLAFSSSQLRDNSVWMFAPTTDLNADAIRQWM 1645
             NG RT +Y RILSTLR+G  IG KKF+FLAFSSSQLRDNSVWMFA    L A+ IR WM
Sbjct: 418  -NGVRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWM 476

Query: 1646 GNFSDIRNVAKYAARLGQSFGSSKETLSVGENEIEKISDV--TLSGTKYIFSDGIGKISA 1819
            G F  IRNVAKYAARLGQSFGSS+ETLSVG +E+E I DV  +L GT YIFSDGIGKISA
Sbjct: 477  GGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISA 536

Query: 1820 DFARRVAIKCGVKGFIPSAFQIRYGGYKGVVAIDPTSSVKLSLRTSMLKYKSDNTKLDVL 1999
            DFARRVA+KCG++ + PS FQIRYGGYKGVVA+DP SS+KLSLR SMLKY+S+N KLDVL
Sbjct: 537  DFARRVAVKCGLQ-YTPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVL 595

Query: 2000 AWSKYQPCFLNRQIITLLSTLGVKDHVFEKKQREAVAQLDDILVDPLKAEEALDLMSPGE 2179
             WSKYQPC+LNRQ++TLLSTLGVKD VFE+KQ EAV QLD IL D LKA+EAL+LMSPGE
Sbjct: 596  GWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGE 655

Query: 2180 YTNILKEMLKCGYKPDKEPFLSMMLQTFRASKLLDLRVKARIFVPQARQMMGCMDETGTL 2359
             TNILKEML CGY PD EPFLSMMLQTFRASKLLDLR ++RIF+P  R MMGC+DE+ TL
Sbjct: 656  NTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTL 715

Query: 2360 EYGQVFVQFSGAGSRRFYGESSILDDYTSTACNYILKGKVAVAKNPCLHPGDVRVLKAID 2539
            EYGQVFVQF+G G R+FY ES   +D  ST C++IL+G V VAKNPCLHPGD+RVL+A+D
Sbjct: 716  EYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVD 775

Query: 2540 VPALHHMVDCIVFPKRGKRPHPNECSGSDLDGDIYFVCWDPEMIPPRQVDPMNYDPPPNV 2719
            VPALHHMVDC+VFP++GKRPHPNECSGSDLDGDIYFVCWDP+++PPRQ  PM+Y P P+ 
Sbjct: 776  VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPST 835

Query: 2720 LLDHEVTINEVEEYFTNYIVNDSLGIIANAHTVFADREEGMALSDSCLELARLFSIAVDF 2899
             LDH+VTI EVEEYFTNYIVNDSLGIIANAH VFADRE  MA+SD C +LA+LFSIAVDF
Sbjct: 836  QLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDF 895

Query: 2900 PKTGIPAEIPPKLRVKEYPDFMDKPDKTTYKSNRIIGKLFREVKDIAPDTVSFQSFTKDV 3079
            PKTG+PAEIP +LR KEYPDFM+KPDK TY S ++IGKLF++VKD  P   S  +FT DV
Sbjct: 896  PKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDV 955

Query: 3080 ARRSYDTDLEVHGFKDYIDEAFDYKIDYDYKLGNLMDYYGIKTEAEILSGSIMRMSKTFD 3259
            AR+SYD D+ V+GF+DYIDEAF YK +YD KLGNLMDYYGIKTEAEILSG IM+ SKTFD
Sbjct: 956  ARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFD 1015

Query: 3260 RRKDSEAIGAAVRSLRNEARSWFRKGGDSDDEYAKASAWYHVTYHADYWGCYDEGLKRDH 3439
            RRKD++AIG AVRSLR EAR+WF++  D DD  AKASAWYHVTYH  YWG Y+EGLKRDH
Sbjct: 1016 RRKDADAIGVAVRSLRKEARTWFKRRSDIDDMLAKASAWYHVTYHHTYWGFYNEGLKRDH 1075

Query: 3440 YISFPWCVYDKLVQIKKKK 3496
            +ISFPWC+YD+L+QIKK K
Sbjct: 1076 FISFPWCIYDQLIQIKKAK 1094


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score = 1550 bits (4014), Expect = 0.0
 Identities = 764/1097 (69%), Positives = 895/1097 (81%), Gaps = 4/1097 (0%)
 Frame = +2

Query: 218  MGKTIQVSGFPHRIEAKVLRRFLEEYTGQGTVVALEVKTMKRGSRAYARVQFTDSTCAET 397
            MGKTIQV GFP+ + A+V++ FLE++TG GT+ ALEVK  K GSRA+A+VQF D+  A+ 
Sbjct: 1    MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSKGGSRAFAKVQFVDNISADK 60

Query: 398  IIDLANRRLYYGSSFLKAWPWEGDMIPNPRTFTSEMEGITLNFGCQISKQKFSVLWSGSD 577
            II+LA++RLY+GSS+LKAW  + D++   R +   M+GITLNFGCQIS+ KF+VL S ++
Sbjct: 61   IINLASKRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISEDKFAVLGS-TE 118

Query: 578  VSVKFGTGLKKMHFYLSHNSVEYRLQLSYENIWQIVLYNLRSRTAKFLLIQLFGGPRVYK 757
            VS+KFG GLKK  F+LS  S +Y+LQLSYENIWQ+VL+    + A+FLLIQLFG PR+YK
Sbjct: 119  VSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYK 178

Query: 758  KLGDSIYSYFRQTQDDQWVRTTDFTPSCIGQSSGLCLQLPHGMRLPNFRDNFAYYTESED 937
            +L +S YS+F++T DDQWVRTTDFTPS IG SS LCLQ   G+ LPNF+++F +Y E E+
Sbjct: 179  RLENSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAEREN 238

Query: 938  TLVLQNGVPF--SEDLPLVPIVKPPRGHELPFRILFKVCCLVQTGCLPGPKLGTRFFQLV 1111
             + LQ G  F  S+   LVP V+PP G  +P++ILFK+  LVQ GC+PGP L   FF+LV
Sbjct: 239  NITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLV 298

Query: 1112 NPQIFDLKYIEHALEKLYYLKECCYDPVAWLIEQYQKYQANIEQPKPPAINLDEGLVYVR 1291
            +PQ  ++  IE ALEKLYYLKECCYDPV WL EQY  Y    + PK P+I LD+GLVYVR
Sbjct: 299  DPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVR 358

Query: 1292 RVQVTPTKVYFAGPEVNVSNRVLRAFHDHIDNFLRVSFVDEEWDKMYSTDLSPRVAAGGE 1471
            RV VTP KVYF GPEVNVSNRVLR + + IDNFLRVSFVDEEW+K+YST+L P+ + G  
Sbjct: 359  RVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTG-- 416

Query: 1472 NG-RTQLYQRILSTLRDGIQIGRKKFDFLAFSSSQLRDNSVWMFAPTTDLNADAIRQWMG 1648
            NG RT +Y+RILSTLR G  IG KKF+FLAFSSSQLRDNSVWMFA    L  + IR WMG
Sbjct: 417  NGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMG 476

Query: 1649 NFSDIRNVAKYAARLGQSFGSSKETLSVGENEIEKISDVTLSGTKYIFSDGIGKISADFA 1828
            +FS I+NVAKYAARLGQSFGSS+ETLSV  +EIE I DV + GT Y+FSDGIGKISADFA
Sbjct: 477  DFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVHGTSYVFSDGIGKISADFA 536

Query: 1829 RRVAIKCGVKGFIPSAFQIRYGGYKGVVAIDPTSSVKLSLRTSMLKYKSDNTKLDVLAWS 2008
            RRVA KCG++ + PSAFQIRYGGYKGVVA+DP SS+KLSLR SM KY+SDN KLDVL WS
Sbjct: 537  RRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWS 595

Query: 2009 KYQPCFLNRQIITLLSTLGVKDHVFEKKQREAVAQLDDILVDPLKAEEALDLMSPGEYTN 2188
            KYQPC+LNRQ++TLLSTLGVKD V E+KQ+EAV QLD IL D LKA+EAL+LMSPGE TN
Sbjct: 596  KYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTN 655

Query: 2189 ILKEMLKCGYKPDKEPFLSMMLQTFRASKLLDLRVKARIFVPQARQMMGCMDETGTLEYG 2368
            ILK ML CGY PD EPFLSMMLQTFRASKLLDLR ++RIF+P  R MMGC+DE+ TLEYG
Sbjct: 656  ILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYG 715

Query: 2369 QVFVQFSGAGSRRFYGESSILDDYTSTACNYILKGKVAVAKNPCLHPGDVRVLKAIDVPA 2548
            QVFVQF+GAG R F  +    ++  ST CN+ILKG V VAKNPCLHPGD+RVL+A+DVPA
Sbjct: 716  QVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPA 775

Query: 2549 LHHMVDCIVFPKRGKRPHPNECSGSDLDGDIYFVCWDPEMIPPRQVDPMNYDPPPNVLLD 2728
            LHHMVDC+VFP++GKRPHPNECSGSDLDGDIYFVCWD +MIPPRQV  M Y P P++ LD
Sbjct: 776  LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLD 835

Query: 2729 HEVTINEVEEYFTNYIVNDSLGIIANAHTVFADREEGMALSDSCLELARLFSIAVDFPKT 2908
            H VTI EVEEYFTNYIVNDSLGIIANAH VFADRE  MA+SD C +LA LFSIAVDFPKT
Sbjct: 836  HNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKT 895

Query: 2909 GIPAEIPPKLRVKEYPDFMDK-PDKTTYKSNRIIGKLFREVKDIAPDTVSFQSFTKDVAR 3085
            G+PAEIP +LR KEYPDFMDK PDKTTY S R+IGKLFR+VKD AP   S   FT+DVAR
Sbjct: 896  GVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVAR 955

Query: 3086 RSYDTDLEVHGFKDYIDEAFDYKIDYDYKLGNLMDYYGIKTEAEILSGSIMRMSKTFDRR 3265
            RSYD DLEV GF+DYIDEAFDYK +YD KLGNLMDYYGIKTEAEILSG IM+ SKTFDRR
Sbjct: 956  RSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRR 1015

Query: 3266 KDSEAIGAAVRSLRNEARSWFRKGGDSDDEYAKASAWYHVTYHADYWGCYDEGLKRDHYI 3445
            KD+EAI  AVR+LR EAR+WF++  D DD   KASAWYHVTYH  YWGCY++GLKRDH+I
Sbjct: 1016 KDAEAISVAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHFI 1075

Query: 3446 SFPWCVYDKLVQIKKKK 3496
            SFPWCVYD+L+QIKK+K
Sbjct: 1076 SFPWCVYDQLIQIKKEK 1092


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score = 1549 bits (4011), Expect = 0.0
 Identities = 760/1097 (69%), Positives = 897/1097 (81%), Gaps = 4/1097 (0%)
 Frame = +2

Query: 218  MGKTIQVSGFPHRIEAKVLRRFLEEYTGQGTVVALEVKTMKRGSRAYARVQFTDSTCAET 397
            MGKTIQV GFP+ + A+ +++FLE +TG GTV ALEVK  K G RA+A+VQF ++  AE 
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEF 60

Query: 398  IIDLANRRLYYGSSFLKAWPWEGDMIPNPRTFTSEMEGITLNFGCQISKQKFSVLWSGSD 577
            IIDLA++ LYYG S+LKAW  + D++  PRT+   M+G+TLNFGCQIS +KF+VL S  D
Sbjct: 61   IIDLASKGLYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLGS-KD 118

Query: 578  VSVKFGTGLKKMHFYLSHNSVEYRLQLSYENIWQIVLYNLRSRTAKFLLIQLFGGPRVYK 757
            VS+KFG GLKK++F+LSH S +Y+LQLSYENIWQ+VL+    + A+FLL+QLFG PR+YK
Sbjct: 119  VSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIYK 178

Query: 758  KLGDSIYSYFRQTQDDQWVRTTDFTPSCIGQSSGLCLQLPHGMRLPNFRDNFAYYTESED 937
            +L DS YS+F++T DDQWVRTTDFTPS IG SS LCL+  +G++LPNF ++F YY ES +
Sbjct: 179  RLEDSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEFRNGVQLPNFSESFFYYKESMN 238

Query: 938  TLVLQNGVPFS--EDLPLVPIVKPPRGHELPFRILFKVCCLVQTGCLPGPKLGTRFFQLV 1111
              +LQ G  FS  + L LVPIV  P G ELP++ILFK+  L+Q GC PG  L   FFQLV
Sbjct: 239  QFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQLV 298

Query: 1112 NPQIFDLKYIEHALEKLYYLKECCYDPVAWLIEQYQKYQANIEQPKPPAINLDEGLVYVR 1291
            +P+  ++  IEHALEKLYYLKECCYDPV WL EQY +Y    + PK P I LD+GLVYVR
Sbjct: 299  DPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPPITLDDGLVYVR 358

Query: 1292 RVQVTPTKVYFAGPEVNVSNRVLRAFHDHIDNFLRVSFVDEEWDKMYSTDLSPRVAAGGE 1471
            RV VTP KVYF GPEVNVSNRVLR + + I+NFLRVSFVDEEW+K++STDL PR A+ G 
Sbjct: 359  RVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDLLPR-ASTGN 417

Query: 1472 NGRTQLYQRILSTLRDGIQIGRKKFDFLAFSSSQLRDNSVWMFAPTTDLNADAIRQWMGN 1651
              RT +Y+RILSTLR+G  IG K+F+FLAFSSSQLRDNSVWMFA    L A+ IR WMG+
Sbjct: 418  GTRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGD 477

Query: 1652 FSDIRNVAKYAARLGQSFGSSKETLSVGENEIEKISDV--TLSGTKYIFSDGIGKISADF 1825
            F  IRNVAKYAARLGQSFGSS+ETLSVG +E+E I DV  +L GT YIFSDGIGKISADF
Sbjct: 478  FRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNYIFSDGIGKISADF 537

Query: 1826 ARRVAIKCGVKGFIPSAFQIRYGGYKGVVAIDPTSSVKLSLRTSMLKYKSDNTKLDVLAW 2005
            A RV IKCG++ + PS+FQIRYGGYKGVVA+DP SS+KLSLR SMLKY+S+N KLDVL W
Sbjct: 538  AHRVTIKCGLQ-YTPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLGW 596

Query: 2006 SKYQPCFLNRQIITLLSTLGVKDHVFEKKQREAVAQLDDILVDPLKAEEALDLMSPGEYT 2185
            SKYQPC+LNRQ++TLLSTLGV D V E+KQ EAV QLD IL D LKA+EAL+LMSPGE T
Sbjct: 597  SKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGENT 656

Query: 2186 NILKEMLKCGYKPDKEPFLSMMLQTFRASKLLDLRVKARIFVPQARQMMGCMDETGTLEY 2365
            NILKEML CGY PD EPFLSMMLQTFRASKLLDLR + RIF+P  R MMGC+DE+ TLEY
Sbjct: 657  NILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEY 716

Query: 2366 GQVFVQFSGAGSRRFYGESSILDDYTSTACNYILKGKVAVAKNPCLHPGDVRVLKAIDVP 2545
            GQVFVQFSGAG R+F+ ES   +D  S  C++ILKG V VAKNPCLHPGD+RVL+A+DVP
Sbjct: 717  GQVFVQFSGAGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVP 776

Query: 2546 ALHHMVDCIVFPKRGKRPHPNECSGSDLDGDIYFVCWDPEMIPPRQVDPMNYDPPPNVLL 2725
            ALHHMVDC+VFP++GKRPHPNECSGSDLDGDIYFVCWDP++IPPRQV  M+Y P P   L
Sbjct: 777  ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTTQL 836

Query: 2726 DHEVTINEVEEYFTNYIVNDSLGIIANAHTVFADREEGMALSDSCLELARLFSIAVDFPK 2905
            DH+VTI EVEEYFTNYI+NDSLGIIANAH VFADRE  MA+SD C +LA+LFSIAVDFPK
Sbjct: 837  DHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPK 896

Query: 2906 TGIPAEIPPKLRVKEYPDFMDKPDKTTYKSNRIIGKLFREVKDIAPDTVSFQSFTKDVAR 3085
            TG+PAEIP +LR KEYPDFM+KPDK TY S ++IGKLF++VK+  P   S  +FT+DVAR
Sbjct: 897  TGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVAR 956

Query: 3086 RSYDTDLEVHGFKDYIDEAFDYKIDYDYKLGNLMDYYGIKTEAEILSGSIMRMSKTFDRR 3265
            +SYD+D+ V GF+DYIDEAF YK +YD KLGNLMDYYGIKTEAEILSG IM+ SKTFDRR
Sbjct: 957  KSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRR 1016

Query: 3266 KDSEAIGAAVRSLRNEARSWFRKGGDSDDEYAKASAWYHVTYHADYWGCYDEGLKRDHYI 3445
            KD+EAIG AVR LR EAR+WF++  D DD  AKASAWYHVTYH  YWG Y+EGLKRDH+I
Sbjct: 1017 KDAEAIGVAVRCLRKEARAWFKRRSDIDDMLAKASAWYHVTYHHTYWGLYNEGLKRDHFI 1076

Query: 3446 SFPWCVYDKLVQIKKKK 3496
            SFPWCVYD+L+QIKK K
Sbjct: 1077 SFPWCVYDQLIQIKKAK 1093


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score = 1546 bits (4004), Expect = 0.0
 Identities = 760/1095 (69%), Positives = 889/1095 (81%), Gaps = 2/1095 (0%)
 Frame = +2

Query: 218  MGKTIQVSGFPHRIEAKVLRRFLEEYTGQGTVVALEVKTMKRGSRAYARVQFTDSTCAET 397
            MGKTIQV GFP+ + A+V++ FLE+YTG GTV ALEVK  K GSRA+A+VQF D+  A+ 
Sbjct: 1    MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSKGGSRAFAKVQFADNISADK 60

Query: 398  IIDLANRRLYYGSSFLKAWPWEGDMIPNPRTFTSEMEGITLNFGCQISKQKFSVLWSGSD 577
            II LAN RLY+GSS+LKAW  + D++   R +  +M+GITLNFGCQIS  KF+VL S ++
Sbjct: 61   IITLANNRLYFGSSYLKAWEMKTDIV-QLRAYVDQMDGITLNFGCQISDDKFAVLGS-TE 118

Query: 578  VSVKFGTGLKKMHFYLSHNSVEYRLQLSYENIWQIVLYNLRSRTAKFLLIQLFGGPRVYK 757
            VS++FG GLKK  F+LS  S +Y+LQLSYENIWQ+VL+    + A+FLLIQLFG PR+YK
Sbjct: 119  VSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYK 178

Query: 758  KLGDSIYSYFRQTQDDQWVRTTDFTPSCIGQSSGLCLQLPHGMRLPNFRDNFAYYTESED 937
            +L +S YS+F++T DDQWVRTTDF PS IG SS LCLQ   G+RLPNF ++F +Y E E+
Sbjct: 179  RLENSCYSFFKETPDDQWVRTTDFPPSWIGLSSSLCLQFRRGVRLPNFEESFFHYAEREN 238

Query: 938  TLVLQNGVPF--SEDLPLVPIVKPPRGHELPFRILFKVCCLVQTGCLPGPKLGTRFFQLV 1111
             + LQ G  F  S+   LVP V+PP G  +P++ILFK+  LVQ GC+PGP L   FF+LV
Sbjct: 239  NITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPGPALNVYFFRLV 298

Query: 1112 NPQIFDLKYIEHALEKLYYLKECCYDPVAWLIEQYQKYQANIEQPKPPAINLDEGLVYVR 1291
            +P+  ++  IEHALEKLYY+KECCYDPV WL EQY  Y    + PK P+I LD+GLVYVR
Sbjct: 299  DPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVR 358

Query: 1292 RVQVTPTKVYFAGPEVNVSNRVLRAFHDHIDNFLRVSFVDEEWDKMYSTDLSPRVAAGGE 1471
            RV VTP KVYF GPEVNVSNRVLR + + IDNFLRVSFVDEEW+K+YSTDL P+ A+ G 
Sbjct: 359  RVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPK-ASTGS 417

Query: 1472 NGRTQLYQRILSTLRDGIQIGRKKFDFLAFSSSQLRDNSVWMFAPTTDLNADAIRQWMGN 1651
              RT +Y+RILSTLR G  IG KKF+FLAFSSSQLRDNSVWMFA    L A+ IR WMG+
Sbjct: 418  GVRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMGD 477

Query: 1652 FSDIRNVAKYAARLGQSFGSSKETLSVGENEIEKISDVTLSGTKYIFSDGIGKISADFAR 1831
            FS I+NVAKYAARLGQSFGSS+ETLSV  +EIE I DV + GT Y+FSDGIGKIS DFA 
Sbjct: 478  FSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVHGTSYVFSDGIGKISGDFAH 537

Query: 1832 RVAIKCGVKGFIPSAFQIRYGGYKGVVAIDPTSSVKLSLRTSMLKYKSDNTKLDVLAWSK 2011
            RVA KCG++ + PSAFQIRYGGYKGVV +DP SS+KLSLR SM KY+SDN KLDVL WSK
Sbjct: 538  RVASKCGLQ-YTPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESDNIKLDVLGWSK 596

Query: 2012 YQPCFLNRQIITLLSTLGVKDHVFEKKQREAVAQLDDILVDPLKAEEALDLMSPGEYTNI 2191
            YQPC+LNRQ+ITLLSTLGVKD V E+KQ+EAV QLD IL D LKA+EAL+LMSPGE TNI
Sbjct: 597  YQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNI 656

Query: 2192 LKEMLKCGYKPDKEPFLSMMLQTFRASKLLDLRVKARIFVPQARQMMGCMDETGTLEYGQ 2371
            LK ML CGYKPD EPFLSMMLQTFRASKLLDLR ++RIF+P  R MMGC+DE+ TLEYGQ
Sbjct: 657  LKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQ 716

Query: 2372 VFVQFSGAGSRRFYGESSILDDYTSTACNYILKGKVAVAKNPCLHPGDVRVLKAIDVPAL 2551
            VFVQF+GAG   F  +    ++  ST  N+ILKG V VAKNPCLHPGD+RVLKA++V AL
Sbjct: 717  VFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVRAL 776

Query: 2552 HHMVDCIVFPKRGKRPHPNECSGSDLDGDIYFVCWDPEMIPPRQVDPMNYDPPPNVLLDH 2731
            HHMVDC+VFP++GKRPHPNECSGSDLDGDIYFVCWD +MIPPRQV PM Y P P++ LDH
Sbjct: 777  HHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDH 836

Query: 2732 EVTINEVEEYFTNYIVNDSLGIIANAHTVFADREEGMALSDSCLELARLFSIAVDFPKTG 2911
            +VTI EVEEYFTNYIVNDSLGIIANAH VFADRE  MA+SD C +LA LFSIAVDFPKTG
Sbjct: 837  DVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTG 896

Query: 2912 IPAEIPPKLRVKEYPDFMDKPDKTTYKSNRIIGKLFREVKDIAPDTVSFQSFTKDVARRS 3091
            +PAEIP +LR KEYPDFMDKPDKT+Y S R+IGKLFR+VKD AP   S  +FT+DVARRS
Sbjct: 897  VPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVARRS 956

Query: 3092 YDTDLEVHGFKDYIDEAFDYKIDYDYKLGNLMDYYGIKTEAEILSGSIMRMSKTFDRRKD 3271
            YD D+EV GF+DYIDEAFDYK +YD KLGNLMDYYGIKTEAEILSG IM+ SKTFDRRKD
Sbjct: 957  YDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKD 1016

Query: 3272 SEAIGAAVRSLRNEARSWFRKGGDSDDEYAKASAWYHVTYHADYWGCYDEGLKRDHYISF 3451
            +EAI  AVR+LR EAR+WF++  D DD   KASAWYHVTYH  YWGCY++GLKR H+ISF
Sbjct: 1017 AEAISVAVRALRKEARAWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRAHFISF 1076

Query: 3452 PWCVYDKLVQIKKKK 3496
            PWCVYD+L+QIKK K
Sbjct: 1077 PWCVYDQLIQIKKDK 1091


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1504 bits (3894), Expect = 0.0
 Identities = 740/1104 (67%), Positives = 884/1104 (80%), Gaps = 11/1104 (0%)
 Frame = +2

Query: 218  MGKTIQVSGFPHRIEAKVLRRFLEEYTGQGTVVALEVKTMKRG-SRAYARVQFTDSTCAE 394
            M KTIQV GFP  + A  ++ FLE+YTG+GT+ ALE+K  + G S  +A+VQFT    AE
Sbjct: 1    MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60

Query: 395  TIIDLANRRLYYGSSFLKAWPWEGDMIPNPRTFTSEMEGITLNFGCQISKQKFSVLWSGS 574
             II L  ++++YG ++LKA   + D+IP PR F   M+ ITL+FGCQ+S ++F VLW   
Sbjct: 61   FIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAI 120

Query: 575  DVSVKFGTGLKKMHFYLSHNSVEYRLQLSYENIWQIVLYNLRSRTAKFLLIQLFGGPRVY 754
            +VSVKFG+GL+K +F+LSH S EY+L+LSYENIWQI L + R +  KFLLIQL G P++Y
Sbjct: 121  NVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQIY 180

Query: 755  KKLGDSIYSYFRQTQDDQWVRTTDFTPSC-IGQSSGLCLQLPHGMRLPNFRDNFAYYTES 931
            +K    +  YF++  DDQWVR  DFTPSC IGQS  LCL+LP+G +LPNFR+NFAYY E+
Sbjct: 181  EKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKEN 240

Query: 932  EDTLVLQNGVPFSEDLPLVPIVKPPRGHELPFRILFKVCCLVQTGCLPGPKLGTRFFQLV 1111
            +   +L++G  +S +L LVPI+ PP+G  LPF+ILFK+  LVQ GCL GP L T FF+LV
Sbjct: 241  DGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRLV 300

Query: 1112 NPQIFDLKYIEHALEKLYYLKECCYDPVAWLIEQYQKYQANIEQPKP--PAINLDEGLVY 1285
            +P+ F + +IEHALEKLY+LKECCY+PV WL EQY+ Y   +++P    PAI+LD GLVY
Sbjct: 301  DPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTY---VKKPVAGSPAISLDTGLVY 357

Query: 1286 VRRVQVTPTKVYFAGPEVNVSNRVLRAFHDHIDNFLRVSFVDEEWDKMYSTDLSPRVAAG 1465
            VRRVQ+TP KVYF GPEVNVSNRVLR + + IDNFLRVSF+DE  +K++ST +SPR++  
Sbjct: 358  VRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMSKE 417

Query: 1466 GENGRTQLYQRILSTLRDGIQIGRKKFDFLAFSSSQLRDNSVWMFAPTTDLNADAIRQWM 1645
            G   RT +Y+RILS L++GI IG KKFDFLAFSSSQLRDNS WMFA    L A  IR WM
Sbjct: 418  GR--RTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWM 475

Query: 1646 GNFSDIRNVAKYAARLGQSFGSSKETLSVGENEIEKISDVTL--SGTKYIFSDGIGKISA 1819
            G+FS IRNVAKYAARLGQSF SSKETL V ++EIE I D+ +    T Y+FSDGIGKIS 
Sbjct: 476  GDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISP 535

Query: 1820 DFARRVAIKCGVKGFIPSAFQIRYGGYKGVVAIDPTSSVKLSLRTSMLKYKSDNTKLDVL 1999
              A RVAIKCG K   PSAFQIRYGGYKGVVA+DPTSS KLSLR SM KY+SDNT LDVL
Sbjct: 536  QLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVL 595

Query: 2000 AWSKYQPCFLNRQIITLLSTLGVKDHVFEKKQREAVAQLDDILVDPLKAEEALDLMSPGE 2179
            AWSKYQP FLNRQ+ITLLSTLGVKDHVFEKKQR AV QLD IL DP+ A+EAL+LMSPGE
Sbjct: 596  AWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGE 655

Query: 2180 YTNILKEMLKCGYKPDKEPFLSMMLQTFRASKLLDLRVKARIFVPQARQMMGCMDETGTL 2359
             TN+LKEML CGYKPD EPFLSMMLQTFRA+KLL+LR K RIFVP  R MMGC+DET TL
Sbjct: 656  NTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTL 715

Query: 2360 EYGQVFVQFSGAGSRRFYGESSILDDYTSTACNYILKGKVAVAKNPCLHPGDVRVLKAID 2539
            EYG+VFVQ SG G R+ +G+S +     S   N+IL+GK+ VAKNPCLHPGDVRVL A++
Sbjct: 716  EYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVN 775

Query: 2540 VPALHHMVDCIVFPKRGKRPHPNECSGSDLDGDIYFVCWDPEMIPPRQVDPMNYDPPPNV 2719
            VP LHHMVDC+VFP++GKRPHPNECSGSDLDGDIYFVCWD ++IPP+Q++PM+Y P P  
Sbjct: 776  VPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTK 835

Query: 2720 LLDHEVTINEVEEYFTNYIVNDSLGIIANAHTVFADREEGMALSDSCLELARLFSIAVDF 2899
            +LDH+V I EVEEYFTNYIVNDSLGIIANAHTVFAD+E   A  D C ELA+LFSIAVDF
Sbjct: 836  VLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDF 895

Query: 2900 PKTGIPAEIPPKLRVKEYPDFMDKPDKTTYKSNRIIGKLFREVKDIAPDTVSFQSFTKDV 3079
            PKTG+PAEIP  LRVKEYPDFM+K DK TY+S  +IGKLFREVKDIAP   + +SFT+DV
Sbjct: 896  PKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDV 955

Query: 3080 ARRSYDTDLEVHGFKDYIDEAFDYKIDYDYKLGNLMDYYGIKTEAEILSGSIMRMSKTFD 3259
            AR+SYD D+EV GF+DY+ +AF YK +YDYKLGNLMDYYGIKTE+EILSGSIMRMSK+FD
Sbjct: 956  ARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFD 1015

Query: 3260 RRKDSEAIGAAVRSLRNEARSWFRKGG-----DSDDEYAKASAWYHVTYHADYWGCYDEG 3424
            RRKD+EAIG AV+SLR EAR+WF K G     ++DD YAKASAWYHVTYH DYWGCY+EG
Sbjct: 1016 RRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEG 1075

Query: 3425 LKRDHYISFPWCVYDKLVQIKKKK 3496
            + RDH++SFPWCVYDKL+  K+KK
Sbjct: 1076 MDRDHFLSFPWCVYDKLIHTKRKK 1099