BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria23_contig00003345
         (2057 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   238   e-116
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   238   e-115
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   204   e-101
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp....   209   5e-95
emb|CAD20832.1| sigma factor [Spinacia oleracea]                      203   2e-94

>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|296081598|emb|CBI20603.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  238 bits (607), Expect(3) = e-116
 Identities = 127/227 (55%), Positives = 154/227 (67%)
 Frame = +3

Query: 615  SSCSFDLSNAPAEIVNEPSRVNDTEDDXXXXXXXXXXXXELRKLRRKHTVEKETAASMQE 794
            +S SFDL +AP E + E  + N T DD            E RK +R+  +EK        
Sbjct: 176  TSTSFDLFSAPTEHIRE-CQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFP 234

Query: 795  FASETISKYMQQPKFASARRTQRSRNKRQKIAKNEAEMSTGVKLVAXXXXXXXXXXXXSG 974
              S+TI K   +P  ++ +RT  SR KR   AKNEAEMS GVKLVA             G
Sbjct: 235  LPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIG 294

Query: 975  QAPSLSSWAEAAGVEKKELQNRLHYGWHCRDELLRSTRSLVLFIARNYSGLGVAFEDLIQ 1154
               SLS+WAEAAGV+KK LQ +L +GW+CRDELLRST SLVL+IARNY G+GVAFED++Q
Sbjct: 295  HVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQ 354

Query: 1155 AGKLGVLQGAERFDQSRGYKFSTYVQYWVKKSMSTLVARHARGVRIP 1295
            AG LGVLQGAERFD ++GY+FSTYVQYW++KSMSTLVARHARGV+IP
Sbjct: 355  AGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIP 401



 Score =  177 bits (448), Expect(3) = e-116
 Identities = 91/157 (57%), Positives = 111/157 (70%)
 Frame = +1

Query: 1348 TLTKVINQVKKARKALSTSNGKYPDDIEIAKFTGLPMAKIVSASKCLRVVGSIDQKIGLS 1527
            TL + I Q++KARKAL  S+G+YPDD EIAKFTGL +AKI SA  CLRVVGS DQ     
Sbjct: 403  TLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDC 462

Query: 1528 INTTFMETTHDTSIVSPEESACRQHMINDVYTLLHGLEPREKQVIILRFGLGNHQCKSLE 1707
               T +E T DTSI SPEE   +Q    D++ LL GL+PRE+Q+++LR+G G  Q KSLE
Sbjct: 463  WGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLE 522

Query: 1708 EIGRRFRVSKEWIRKIERAALTKLRSADSFKILSHYV 1818
            EIGRRF VSKEWIRK+E+ AL  LR  +  + L HYV
Sbjct: 523  EIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYV 559



 Score = 55.1 bits (131), Expect(3) = e-116
 Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 5/145 (3%)
 Frame = +1

Query: 127 MGFRLHVKWAGXXXXXXXXXXXXXXXXXXXCRGRDNSYFLARLS---AEYGEAETL-NDT 294
           MGFRL++KW                      +G++ S+   R S       + E+L  D 
Sbjct: 3   MGFRLNLKW-DFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKDP 61

Query: 295 SRVQVCSSSH-QLLEKSFVETRELKVVLGKGSGDGLYSLLNDDIQTSNNEDKLGYLTSLQ 471
            +   CSS   Q  E  +     +K+ +GK S   L+ ++N   Q    ED    +  LQ
Sbjct: 62  FKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNAS-QAPIGEDISASVAGLQ 120

Query: 472 ATQASQYRLLMKNLDMLDYMFSDSH 546
           A++ASQ+ LL++NLD+L+ MF+DS+
Sbjct: 121 ASKASQFSLLLENLDILEEMFADSN 145


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  238 bits (607), Expect(3) = e-115
 Identities = 127/227 (55%), Positives = 154/227 (67%)
 Frame = +3

Query: 615  SSCSFDLSNAPAEIVNEPSRVNDTEDDXXXXXXXXXXXXELRKLRRKHTVEKETAASMQE 794
            +S SFDL +AP E + E  + N T DD            E RK +R+  +EK        
Sbjct: 226  TSTSFDLFSAPTEHIRE-CQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFP 284

Query: 795  FASETISKYMQQPKFASARRTQRSRNKRQKIAKNEAEMSTGVKLVAXXXXXXXXXXXXSG 974
              S+TI K   +P  ++ +RT  SR KR   AKNEAEMS GVKLVA             G
Sbjct: 285  LPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIG 344

Query: 975  QAPSLSSWAEAAGVEKKELQNRLHYGWHCRDELLRSTRSLVLFIARNYSGLGVAFEDLIQ 1154
               SLS+WAEAAGV+KK LQ +L +GW+CRDELLRST SLVL+IARNY G+GVAFED++Q
Sbjct: 345  HVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQ 404

Query: 1155 AGKLGVLQGAERFDQSRGYKFSTYVQYWVKKSMSTLVARHARGVRIP 1295
            AG LGVLQGAERFD ++GY+FSTYVQYW++KSMSTLVARHARGV+IP
Sbjct: 405  AGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIP 451



 Score =  177 bits (448), Expect(3) = e-115
 Identities = 91/157 (57%), Positives = 111/157 (70%)
 Frame = +1

Query: 1348 TLTKVINQVKKARKALSTSNGKYPDDIEIAKFTGLPMAKIVSASKCLRVVGSIDQKIGLS 1527
            TL + I Q++KARKAL  S+G+YPDD EIAKFTGL +AKI SA  CLRVVGS DQ     
Sbjct: 453  TLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDC 512

Query: 1528 INTTFMETTHDTSIVSPEESACRQHMINDVYTLLHGLEPREKQVIILRFGLGNHQCKSLE 1707
               T +E T DTSI SPEE   +Q    D++ LL GL+PRE+Q+++LR+G G  Q KSLE
Sbjct: 513  WGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLE 572

Query: 1708 EIGRRFRVSKEWIRKIERAALTKLRSADSFKILSHYV 1818
            EIGRRF VSKEWIRK+E+ AL  LR  +  + L HYV
Sbjct: 573  EIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYV 609



 Score = 50.8 bits (120), Expect(3) = e-115
 Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
 Frame = +1

Query: 220 RGRDNSYFLARLS---AEYGEAETL-NDTSRVQVCSSSH-QLLEKSFVETRELKVVLGKG 384
           +G++ S+   R S       + E+L  D  +   CSS   Q  E  +     +K+ +GK 
Sbjct: 83  QGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKC 142

Query: 385 SGDGLYSLLNDDIQTSNNEDKLGYLTSLQATQASQYRLLMKNLDMLDYMFSDSH 546
           S   L+ ++N   Q    ED    +  LQA++ASQ+ LL++NLD+L+ MF+DS+
Sbjct: 143 SHGDLFKIVNAS-QAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSN 195


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 560

 Score =  204 bits (520), Expect(2) = e-101
 Identities = 98/158 (62%), Positives = 128/158 (81%)
 Frame = +1

Query: 1345 CTLTKVINQVKKARKALSTSNGKYPDDIEIAKFTGLPMAKIVSASKCLRVVGSIDQKIGL 1524
            CTL++ I Q++KARKAL+TSNGKYPDD EIAK+TGL +AKI SAS+CLRVVGSIDQKIG 
Sbjct: 401  CTLSRAIYQIQKARKALTTSNGKYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGE 460

Query: 1525 SINTTFMETTHDTSIVSPEESACRQHMINDVYTLLHGLEPREKQVIILRFGLGNHQCKSL 1704
            S+N  ++E   DTS+ SPEE   RQHMI D++ LL  L+ RE+QV+ILRFGL ++Q KSL
Sbjct: 461  SLNAKYLEFLPDTSVQSPEEVVMRQHMIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSL 520

Query: 1705 EEIGRRFRVSKEWIRKIERAALTKLRSADSFKILSHYV 1818
            EEIGR F VSKEW+R++E+  +T+LR+ ++ + L HY+
Sbjct: 521  EEIGRHFHVSKEWVRRLEKRVMTRLRNEETCRNLRHYI 558



 Score =  193 bits (490), Expect(2) = e-101
 Identities = 100/223 (44%), Positives = 144/223 (64%), Gaps = 1/223 (0%)
 Frame = +3

Query: 630  DLSNAPAEIVNEPSRVNDTEDDXXXXXXXXXXXXELRKLRRKH-TVEKETAASMQEFASE 806
            ++S+   EI+ E   +N T  +            E RK RR+  +  K   +      S 
Sbjct: 179  EVSDVHTEIIGE-CNINGTSINNQIKVVVHTAKKEERKSRRERASARKGHKSPSLPLPSR 237

Query: 807  TISKYMQQPKFASARRTQRSRNKRQKIAKNEAEMSTGVKLVAXXXXXXXXXXXXSGQAPS 986
             I    ++P  +S ++  +S+++R  IA+NEAEM+ G+K++A            + +  S
Sbjct: 238  PIQSGSEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVS 297

Query: 987  LSSWAEAAGVEKKELQNRLHYGWHCRDELLRSTRSLVLFIARNYSGLGVAFEDLIQAGKL 1166
            LS WAEAAG++ K LQ +L +GW+CRDEL++STRSLVL+ ARNY G G+A EDL+QAG L
Sbjct: 298  LSCWAEAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNL 357

Query: 1167 GVLQGAERFDQSRGYKFSTYVQYWVKKSMSTLVARHARGVRIP 1295
            GVL+GAERFD +RGY+FSTYVQYW++KSMS +V+R ARG++IP
Sbjct: 358  GVLEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIP 400


>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297323785|gb|EFH54206.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 568

 Score =  209 bits (531), Expect(2) = 5e-95
 Identities = 109/189 (57%), Positives = 132/189 (69%), Gaps = 1/189 (0%)
 Frame = +3

Query: 732  ELRKLRRKHTVEKETA-ASMQEFASETISKYMQQPKFASARRTQRSRNKRQKIAKNEAEM 908
            +L+K  R+ TV  E            T    +  P+    RR  + R KR++I+KNEAEM
Sbjct: 222  KLKKKARRSTVTAENGDQGSLPMGLRTTWNNIDVPR---VRRPPKYRKKRERISKNEAEM 278

Query: 909  STGVKLVAXXXXXXXXXXXXSGQAPSLSSWAEAAGVEKKELQNRLHYGWHCRDELLRSTR 1088
            STGVK+VA            SG+  SLS WAEAAG+ +K L   LHYGW+CRDELL+STR
Sbjct: 279  STGVKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTR 338

Query: 1089 SLVLFIARNYSGLGVAFEDLIQAGKLGVLQGAERFDQSRGYKFSTYVQYWVKKSMSTLVA 1268
            SLVLF+ARNY GLG+A EDLIQAG +GVLQGAERFD +RGYKFSTYVQYW++KSMS +V+
Sbjct: 339  SLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSMMVS 398

Query: 1269 RHARGVRIP 1295
            RHARGV IP
Sbjct: 399  RHARGVHIP 407



 Score =  167 bits (424), Expect(2) = 5e-95
 Identities = 85/158 (53%), Positives = 119/158 (75%), Gaps = 1/158 (0%)
 Frame = +1

Query: 1348 TLTKVINQVKKARKALSTSNG-KYPDDIEIAKFTGLPMAKIVSASKCLRVVGSIDQKIGL 1524
            ++ + INQ++KARK L TS+G KYP D +I+K T L + KI +A++CL+VVGSI++K+G 
Sbjct: 409  SIIRTINQIQKARKTLKTSHGIKYPADEDISKLTSLSVKKIRAANQCLKVVGSIEKKVGD 468

Query: 1525 SINTTFMETTHDTSIVSPEESACRQHMINDVYTLLHGLEPREKQVIILRFGLGNHQCKSL 1704
              +T F+E T DT++ SPEE+  RQ    D++ LL GLEPREKQV++LR+GL N++ KSL
Sbjct: 469  CFSTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQNYRPKSL 528

Query: 1705 EEIGRRFRVSKEWIRKIERAALTKLRSADSFKILSHYV 1818
            EEIG+  RVSKEWIRKIER A+ KLR   + + L +Y+
Sbjct: 529  EEIGKLLRVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 566


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score =  203 bits (517), Expect(2) = 2e-94
 Identities = 102/222 (45%), Positives = 150/222 (67%)
 Frame = +3

Query: 630  DLSNAPAEIVNEPSRVNDTEDDXXXXXXXXXXXXELRKLRRKHTVEKETAASMQEFASET 809
            D+S+ P  ++ E  + N  +D+            E RKLR++  ++  T+      +  +
Sbjct: 170  DMSDLPG-LITEDGKANVRKDNELKKKLVFSKRKEERKLRQERRLQASTSKRCACKSESS 228

Query: 810  ISKYMQQPKFASARRTQRSRNKRQKIAKNEAEMSTGVKLVAXXXXXXXXXXXXSGQAPSL 989
            I   +      +A++T ++R +R  IAKNEAEMS G+K+VA            +G+A SL
Sbjct: 229  IESSIHHVVSTAAKKT-KARGRRAIIAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSL 287

Query: 990  SSWAEAAGVEKKELQNRLHYGWHCRDELLRSTRSLVLFIARNYSGLGVAFEDLIQAGKLG 1169
            + WAEAAG+++K LQ+ LH+GW+CRDELL+S RSLVL+++R Y GLGVA EDL+QAG +G
Sbjct: 288  NCWAEAAGIDEKVLQHDLHFGWYCRDELLKSGRSLVLYLSRYYRGLGVAHEDLMQAGNIG 347

Query: 1170 VLQGAERFDQSRGYKFSTYVQYWVKKSMSTLVARHARGVRIP 1295
            +LQGAERFD +RGY+FSTYVQYW++K+MS LV+RH RG+++P
Sbjct: 348  ILQGAERFDHTRGYQFSTYVQYWIRKAMSQLVSRHGRGIKVP 389



 Score =  171 bits (433), Expect(2) = 2e-94
 Identities = 84/157 (53%), Positives = 116/157 (73%)
 Frame = +1

Query: 1348 TLTKVINQVKKARKALSTSNGKYPDDIEIAKFTGLPMAKIVSASKCLRVVGSIDQKIGLS 1527
            TL+  IN+V+KARK L  S GK+PDD+E++K TGL + KI SA  CLR+VGS+DQK+G  
Sbjct: 391  TLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDKIKSADNCLRIVGSLDQKVGHF 450

Query: 1528 INTTFMETTHDTSIVSPEESACRQHMINDVYTLLHGLEPREKQVIILRFGLGNHQCKSLE 1707
            IN  ++E T DT++  PE++  +QHM NDV+ LL  L+P+E++V+I R+GL  H C SL 
Sbjct: 451  INMKYLECTPDTALEMPEKTVMKQHMRNDVHKLLQELDPKERRVLIHRYGLEGH-CMSLH 509

Query: 1708 EIGRRFRVSKEWIRKIERAALTKLRSADSFKILSHYV 1818
            E+G+ F VSKEWIRK+E+ ALTKLR+  +   L HY+
Sbjct: 510  EVGKVFDVSKEWIRKMEKRALTKLRTEQNQTNLKHYL 546