BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria23_contig00003291
         (3024 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1462   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1433   0.0  
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...  1423   0.0  
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...  1421   0.0  
ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|2...  1368   0.0  

>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1462 bits (3785), Expect = 0.0
 Identities = 725/1012 (71%), Positives = 831/1012 (82%), Gaps = 9/1012 (0%)
 Frame = +3

Query: 15   QEDLALFPRHARLQNMTYASKIRVEAHLQVYTEGISRSDKFKTGVE-KFVEKKIVSEYHD 191
            +E L   PRHARLQNMTY+S+++ + H QVYT+ + RSDK+KTG + K+VEKK++ E + 
Sbjct: 130  KESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNR 189

Query: 192  VVNFGRLPVMVKSNLCFMKNVEKRDCEFDEGGYFVIKGAEKTFIAQEQICLKRLWVAKDP 371
             +  GR+PVMVKS LC+M  VE+ DCE+D GGYF+IKGAEKTFIAQEQICLKRLWV+ +P
Sbjct: 190  DILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNP 249

Query: 372  TWTVSYRPVSKRNRVYIKLVP-KLEQVLGGEKILSVYFFVTEIPLWILFFALGVSNDREA 548
            TW V+YRP+ KR RVY+KL P K E   GGEK+L+VYF  TEIP+WILFFALG S+D+E 
Sbjct: 250  TWMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLTVYFSSTEIPIWILFFALGASSDKEV 309

Query: 549  VKLIDIDTEDSAIENILIASIYEADKKFEG----FRKGGNAIKHIKELMQDCKFPPTESV 716
            V LID + +D+ I NIL+ASI+EAD++ E     FR+ GNAI  + +L++ CKFPP ES+
Sbjct: 310  VDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESI 369

Query: 717  EDCIRNYLFPHLKSPAQKASFLAYMVKCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXX 896
            ++CI  YLFP+     QKA FL YMVKCLL+AY GRRK DNRDD RNK            
Sbjct: 370  QECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERE 429

Query: 897  XKVHIKHAERRMVKAIQKDL--DKDIQSIGLYLDASIITNGLSRAFSTGAWVHPYKRMER 1070
             +VHI+HAERRMVKA+Q++L  D+D++ I  YLDASIITNGLSRAFSTG W HP+KRMER
Sbjct: 430  LRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMER 489

Query: 1071 TSGVVATLRRTNPLQAAADMRKTRQQVSYTGRVGDARYPHPSHWGKLCFLSTPDGENCGL 1250
             SGVVATLRRTNPLQ  ADMRKTRQQV YTG+VGDARYPHPSHWGK+CFLSTPDGENCGL
Sbjct: 490  ISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGL 549

Query: 1251 VKNLASTGLVSTHVLEREVLLRKFQECGMENLVDDASFLRDGKHKVFLDGDWVGMCKDSS 1430
            VKNLA TGLVST VL+   L+ K  +CGME LVDD S    GK+KVFLDGDWVG+C+D  
Sbjct: 550  VKNLAITGLVSTEVLDP--LVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCEDPI 607

Query: 1431 SFVAKLRRRRRKVEVPHQIEIKRDKHHAEVRIFADAGRILRPLLVVQNLKKIKELKGD-F 1607
            SFV +LR +RR  E+P Q+EIKRD+   EVRIF+DAGRILRPLLVV+NLKK+K  KGD F
Sbjct: 608  SFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDF 667

Query: 1608 MFQSLLDNXXXXXXXXXXXXDCQTAWGIKYLFTAELENPPVKYTHCELDSSFLLGLSCGL 1787
             FQSLLD             DC TAWGIKYL     ++PPVKYTHCELD SFLLGLSCG+
Sbjct: 668  TFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGH-DDPPVKYTHCELDMSFLLGLSCGI 726

Query: 1788 IPFANHDHARRVLYQSEKHSQQAIGYSTTNSNIRVDTNSHQLYYPQRPLFRTMLADCLGK 1967
            IP+ANHDHARRVLYQSEKHSQQAIG+STTN NIRVDT SHQLYYPQRPLFRTM++DCLGK
Sbjct: 727  IPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISDCLGK 786

Query: 1968 STYSHHHKGMIPRPEFFNSQCAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKA 2147
              YS  HKG++PRPE+FN Q AIVAVNVHLGYNQEDSLVMNR+SLERGMFRSEH+RSYK+
Sbjct: 787  PGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKS 846

Query: 2148 ELENAEAGGKKVKTDELVSFGKMPSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAASGV 2327
            E++N E+  KK K+++ V FGKM SKIGRVDSLDDDGFP+IGANLQ GDIVIG+ A SGV
Sbjct: 847  EVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGV 906

Query: 2328 DHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLES 2507
            DHSIKLKHTERGMVQKVV+SAND+GKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLES
Sbjct: 907  DHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLES 966

Query: 2508 QENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVEDI 2687
            QENFPFT QGIVPDIVINPHAFPSRQTPGQ                ++ATPFST SV+ I
Sbjct: 967  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPFSTLSVDAI 1026

Query: 2688 TSQLHRLGFTRWGNERVYDGRTGEMVDSLIFMGPTCYQRLTHMAEDKVKFRNTGPVHPLT 2867
              QLHR GF+RWG+ERVY+GRTGEM+ SLIFMGPT YQRL HMAEDKVKFRNTGPVHPLT
Sbjct: 1027 ADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLT 1086

Query: 2868 RQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICRKCQ 3023
            RQPV+DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS+ MHICR+C+
Sbjct: 1087 RQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICRRCK 1138


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1433 bits (3709), Expect = 0.0
 Identities = 716/1012 (70%), Positives = 821/1012 (81%), Gaps = 9/1012 (0%)
 Frame = +3

Query: 15   QEDLALFPRHARLQNMTYASKIRVEAHLQVYTEGISRSDKFKTGVE-KFVEKKIVSEYHD 191
            +E L   PRHARLQNMTY+S+++ + H QVYT+ + RSDK+KTG + K+VEKK++ E + 
Sbjct: 166  KESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNR 225

Query: 192  VVNFGRLPVMVKSNLCFMKNVEKRDCEFDEGGYFVIKGAEKTFIAQEQICLKRLWVAKDP 371
             +  GR+PVMVKS LC+M  VE+ DCE+D GGYF+IKGAEKTFIAQEQICLKRLWV+ +P
Sbjct: 226  DILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNP 285

Query: 372  TWTVSYRPVSKRNRVYIKLVP-KLEQVLGGEKILSVYFFVTEIPLWILFFALGVSNDREA 548
            TW V+YRP+ KR RVY+KL P K E   GGEK+L+VYF  TEIP+WILFFALG S+D+E 
Sbjct: 286  TWMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLTVYFSSTEIPIWILFFALGASSDKEV 345

Query: 549  VKLIDIDTEDSAIENILIASIYEADKKFEG----FRKGGNAIKHIKELMQDCKFPPTESV 716
            V LID + +D+ I NIL+ASI+EAD++ E     FR+ GNAI  + +L++ CKFPP ES+
Sbjct: 346  VDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESI 405

Query: 717  EDCIRNYLFPHLKSPAQKASFLAYMVKCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXX 896
            ++CI  YLFP+     QKA FL YMVKCLL+AY GRRK DNRDD RNK            
Sbjct: 406  QECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERE 465

Query: 897  XKVHIKHAERRMVKAIQKDL--DKDIQSIGLYLDASIITNGLSRAFSTGAWVHPYKRMER 1070
             +VHI+HAERRMVKA+Q++L  D+D++ I  YLDASIITNGLSRAFSTG W HP+KRMER
Sbjct: 466  LRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMER 525

Query: 1071 TSGVVATLRRTNPLQAAADMRKTRQQVSYTGRVGDARYPHPSHWGKLCFLSTPDGENCGL 1250
             SGVVATLRRTNPLQ  ADMRKTRQQV YTG+VGDARYPHPSHWGK+CFLSTPDGENCGL
Sbjct: 526  ISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGL 585

Query: 1251 VKNLASTGLVSTHVLEREVLLRKFQECGMENLVDDASFLRDGKHKVFLDGDWVGMCKDSS 1430
            VKNLA TGLVST VL+   L+ K  +CGME LVDD S    GK+KVFLDGDWVG+C+D  
Sbjct: 586  VKNLAITGLVSTEVLDP--LVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCEDPI 643

Query: 1431 SFVAKLRRRRRKVEVPHQIEIKRDKHHAEVRIFADAGRILRPLLVVQNLKKIKELKGD-F 1607
            SFV +LR +RR  E+P Q+EIKRD+   EVRIF+DAGRILRPLLVV+NLKK+K  KGD F
Sbjct: 644  SFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDF 703

Query: 1608 MFQSLLDNXXXXXXXXXXXXDCQTAWGIKYLFTAELENPPVKYTHCELDSSFLLGLSCGL 1787
             FQSLLD             DC TAWGIKYL     ++PPVKYTHCELD SFLLGLSCG+
Sbjct: 704  TFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGH-DDPPVKYTHCELDMSFLLGLSCGI 762

Query: 1788 IPFANHDHARRVLYQSEKHSQQAIGYSTTNSNIRVDTNSHQLYYPQRPLFRTMLADCLGK 1967
            IP+ANHDHARRVLYQSEKHSQQAIG+STTN NIRVDT SHQLYYPQRPLFRTM++D    
Sbjct: 763  IPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISD---- 818

Query: 1968 STYSHHHKGMIPRPEFFNSQCAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKA 2147
                      +PRPE+FN Q AIVAVNVHLGYNQEDSLVMNR+SLERGMFRSEH+RSYK+
Sbjct: 819  ----------LPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKS 868

Query: 2148 ELENAEAGGKKVKTDELVSFGKMPSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAASGV 2327
            E++N E+  KK K+++ V FGKM SKIGRVDSLDDDGFP+IGANLQ GDIVIG+ A SGV
Sbjct: 869  EVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGV 928

Query: 2328 DHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLES 2507
            DHSIKLKHTERGMVQKVV+SAND+GKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLES
Sbjct: 929  DHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLES 988

Query: 2508 QENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVEDI 2687
            QENFPFT QGIVPDIVINPHAFPSRQTPGQ                ++ATPFST SV+ I
Sbjct: 989  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPFSTLSVDAI 1048

Query: 2688 TSQLHRLGFTRWGNERVYDGRTGEMVDSLIFMGPTCYQRLTHMAEDKVKFRNTGPVHPLT 2867
              QLHR GF+RWG+ERVY+GRTGEM+ SLIFMGPT YQRL HMAEDKVKFRNTGPVHPLT
Sbjct: 1049 ADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLT 1108

Query: 2868 RQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICRKCQ 3023
            RQPV+DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS+ MHICR+C+
Sbjct: 1109 RQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICRRCK 1160


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score = 1423 bits (3684), Expect = 0.0
 Identities = 710/983 (72%), Positives = 799/983 (81%), Gaps = 5/983 (0%)
 Frame = +3

Query: 3    VEGAQEDLALFPRHARLQNMTYASKIRVEAHLQVYTEGISRSDKFKTGVEKFVEKKIVSE 182
            V G +E L L PRHARLQNMTY+++I VE H+QVYT+ + RSDKFKTGV++FV+K+   E
Sbjct: 144  VGGGKEYLDLLPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKTGVDRFVDKEWEVE 203

Query: 183  YHDVVNFGRLPVMVKSNLCFMKNVEKRDCEFDEGGYFVIKGAEKTFIAQEQICLKRLWVA 362
                V  GR+PVMV S LC+M  V+K DCEFD GGYF+ KGAEKTFIAQEQ+CLKRLWV+
Sbjct: 204  GKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHGGYFIAKGAEKTFIAQEQLCLKRLWVS 263

Query: 363  KDPTWTVSYRPVSKRNRVYIKLVP--KLEQVLGGEKILSVYFFVTEIPLWILFFALGVSN 536
             +PTW V YRP  KR RVYIKL    KLE + GGEK LSVY  + E+P+W+LFFALGVS+
Sbjct: 264  NNPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGGEKALSVYI-LAEMPIWVLFFALGVSS 322

Query: 537  DREAVKLIDIDTEDSAIENILIASIYEADKKFEGFRKGGNAIKHIKELMQDCKFPPTESV 716
            DRE V LID+D ED+ I NIL+ASI+EADK  E FRKG  A+ ++  L+++CKFPP ESV
Sbjct: 323  DREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFPPQESV 382

Query: 717  EDCIRNYLFPHLKSPAQKASFLAYMVKCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXX 896
            E+CI  YLFP+L    QKA FL YMVKCLL ++ GRRKVDNRDD RNK            
Sbjct: 383  EECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGELLERE 442

Query: 897  XKVHIKHAERRMVKAIQKDL--DKDIQSIGLYLDASIITNGLSRAFSTGAWVHPYKRMER 1070
             + HIKHAERRMVKA+Q+DL  D+ +Q I  YLDASIITNGLSRAFSTG W HPYKRMER
Sbjct: 443  LRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMER 502

Query: 1071 TSGVVATLRRTNPLQAAADMRKTRQQVSYTGRVGDARYPHPSHWGKLCFLSTPDGENCGL 1250
             SGVVATLRRTNPLQ  ADMRK+RQQV+YTG+VGDARYPHPSHWGKLCFLSTPDGENCGL
Sbjct: 503  VSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVGDARYPHPSHWGKLCFLSTPDGENCGL 562

Query: 1251 VKNLASTGLVSTHVLEREVLLRKFQECGMENLVDDASFLRDGKHKVFLDGDWVGMCKDSS 1430
            VKNLAS GLVST +L+    L     CGM+ LVDD S    GK KV LDG+WVG+C+DS+
Sbjct: 563  VKNLASMGLVSTIILKP--FLETLFRCGMQKLVDDCSTSLHGKQKVLLDGEWVGVCEDSA 620

Query: 1431 SFVAKLRRRRRKVEVPHQIEIKRDKHHAEVRIFADAGRILRPLLVVQNLKKIKELKG-DF 1607
             FV+KLRR+RR+ EVPHQ+E+KRD+   EVRIF+D GRILRPLLVV NLKKIK LKG D+
Sbjct: 621  LFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSDPGRILRPLLVVSNLKKIKALKGGDY 680

Query: 1608 MFQSLLDNXXXXXXXXXXXXDCQTAWGIKYLFTAELENPPVKYTHCELDSSFLLGLSCGL 1787
             FQSLLDN            DC+TAWG++Y+  A+ ENPP KYTHCELD SFLLGLSCG+
Sbjct: 681  GFQSLLDNGIIELIGPEEEEDCRTAWGVEYILKADKENPPAKYTHCELDMSFLLGLSCGI 740

Query: 1788 IPFANHDHARRVLYQSEKHSQQAIGYSTTNSNIRVDTNSHQLYYPQRPLFRTMLADCLGK 1967
            IPFANHDHARRVLYQSEKHSQQAIG+ST N N RVDTN+HQLYYPQRPLFRTMLAD LGK
Sbjct: 741  IPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNRVDTNTHQLYYPQRPLFRTMLADSLGK 800

Query: 1968 STYSHHHKGMIPRPEFFNSQCAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKA 2147
               + + KGM+PRPE+FN QCAIVAVNVHLGYNQEDSLVMNR+SLERGMFRSEHVRSYKA
Sbjct: 801  PKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKA 860

Query: 2148 ELENAEAGGKKVKTDELVSFGKMPSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAASGV 2327
            E++N EA  KK+K ++ V+FGK  SKIGRVDSLDDDGFP+IGANLQ+GDI+IGK + SG 
Sbjct: 861  EVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKFSESGA 920

Query: 2328 DHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLES 2507
            DHS+KLKHTERGMVQKV+LSANDEGKNFAVVSLRQVR+PCLGDKFSSMHGQKGVLGFLES
Sbjct: 921  DHSVKLKHTERGMVQKVLLSANDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 980

Query: 2508 QENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVEDI 2687
            QENFPFT QGIVPDIVINPHAFPSRQTPGQ                KYATPFST SV+ I
Sbjct: 981  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGQKYATPFSTLSVDAI 1040

Query: 2688 TSQLHRLGFTRWGNERVYDGRTGEMVDSLIFMGPTCYQRLTHMAEDKVKFRNTGPVHPLT 2867
              QL   GFTRWGNERVY+GRTGEMV SLIFMGPT YQRL HMAEDKVKFRNTGPVHPLT
Sbjct: 1041 MEQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLT 1100

Query: 2868 RQPVADRKRFGGIKFGEMERDCL 2936
            RQPVADRKRFGGIKFGEMERDCL
Sbjct: 1101 RQPVADRKRFGGIKFGEMERDCL 1123


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score = 1421 bits (3679), Expect = 0.0
 Identities = 704/960 (73%), Positives = 793/960 (82%), Gaps = 4/960 (0%)
 Frame = +3

Query: 153  KFVEKKIVSEYHDVVNFGRLPVMVKSNLCFMKNVEKRDCEFDEGGYFVIKGAEKTFIAQE 332
            ++V+K  +SE +  V  GR+PVM+KS+LC+M  VEK DC+FD GGYF+IKGAEKTFIAQE
Sbjct: 1    QYVDKDPISEDNRDVIIGRIPVMLKSDLCWMNGVEKSDCDFDHGGYFLIKGAEKTFIAQE 60

Query: 333  QICLKRLWVAKDPTWTVSYRPVSKRNRVYIKLVP-KLEQVLGGEKILSVYFFVTEIPLWI 509
            QICLKRLWV+  P+WTV+YR VSKR RVYIKL P K E + GGEK+LSVYF   E P+WI
Sbjct: 61   QICLKRLWVSNSPSWTVAYRDVSKRKRVYIKLEPPKREHIRGGEKVLSVYFSAVEFPIWI 120

Query: 510  LFFALGVSNDREAVKLIDIDTEDSAIENILIASIYEADKKFEGFRKGGNAIKHIKELMQD 689
            LFFALG S+D+E V LID D EDS I N+LIASIY+AD+  +GFR+G NAI  I + +++
Sbjct: 121  LFFALGASSDKEVVNLIDCDGEDSRIVNVLIASIYDADENCKGFRRGRNAINDIMKKIEN 180

Query: 690  CKFPPTESVEDCIRNYLFPHLKSPAQKASFLAYMVKCLLEAYRGRRKVDNRDDLRNKXXX 869
            CKFPP ES+E  + NYLFP+L    QKA FL YMVKCLL+AY GRRK+DNRDD RNK   
Sbjct: 181  CKFPPQESIEAFLSNYLFPNLSGFRQKARFLGYMVKCLLQAYTGRRKIDNRDDFRNKRLE 240

Query: 870  XXXXXXXXXXKVHIKHAERRMVKAIQKDL--DKDIQSIGLYLDASIITNGLSRAFSTGAW 1043
                      +VH+KHAERRMVKA+Q+DL  ++ I +I  YLDASIITNGLSRAFSTGAW
Sbjct: 241  LAGELLERELRVHVKHAERRMVKAMQRDLYGERVIHAIEHYLDASIITNGLSRAFSTGAW 300

Query: 1044 VHPYKRMERTSGVVATLRRTNPLQAAADMRKTRQQVSYTGRVGDARYPHPSHWGKLCFLS 1223
             HPYK+MER SGVVATLRRTNPLQ  ADMRKTRQQVSYTG+VGDARYPHPSHWGK+CFLS
Sbjct: 301  SHPYKKMERISGVVATLRRTNPLQTIADMRKTRQQVSYTGKVGDARYPHPSHWGKICFLS 360

Query: 1224 TPDGENCGLVKNLASTGLVSTHVLEREVLLRKFQECGMENLVDDASFLRDGKHKVFLDGD 1403
            TPDGENCGLVKNLA TGLVST++ E    L K  + GME LVDD S L  GK KVFLDG+
Sbjct: 361  TPDGENCGLVKNLAITGLVSTNIEEH--FLDKLLDSGMEKLVDDTSTLLSGKVKVFLDGN 418

Query: 1404 WVGMCKDSSSFVAKLRRRRRKVEVPHQIEIKRDKHHAEVRIFADAGRILRPLLVVQNLKK 1583
            WVG+C DS SFVA LRR+RR+ EVPHQ+EIKRD+ H EVR+F+DAGRILRPLLVV+NL K
Sbjct: 419  WVGVCGDSVSFVAALRRKRRRKEVPHQVEIKRDEQHREVRVFSDAGRILRPLLVVENLGK 478

Query: 1584 IKELKG-DFMFQSLLDNXXXXXXXXXXXXDCQTAWGIKYLFTAELENPPVKYTHCELDSS 1760
            IK  KG D+ FQSLLD             DC+TAWGI YLF        VKYTHCELD S
Sbjct: 479  IKASKGGDYSFQSLLDKGVIEFIGTEEEEDCRTAWGINYLFMENEAKATVKYTHCELDMS 538

Query: 1761 FLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNSNIRVDTNSHQLYYPQRPLFR 1940
            FLLGLS  +IPFANHDHARRVLYQSEKHSQQA+G++TTN NIRVDTN+HQLYYPQRPLFR
Sbjct: 539  FLLGLSAAIIPFANHDHARRVLYQSEKHSQQAMGFNTTNPNIRVDTNTHQLYYPQRPLFR 598

Query: 1941 TMLADCLGKSTYSHHHKGMIPRPEFFNSQCAIVAVNVHLGYNQEDSLVMNRSSLERGMFR 2120
            TM++DCLGK  Y   H G++PR E+FN QCAIVAVNVHLGYNQEDSLVMNR+SLERGMFR
Sbjct: 599  TMVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFR 658

Query: 2121 SEHVRSYKAELENAEAGGKKVKTDELVSFGKMPSKIGRVDSLDDDGFPYIGANLQTGDIV 2300
            SEH+RSYKA+++N E+ GKK K ++ V+FGK+ SKIGRVDSLDDDGFP+IGANLQ GDIV
Sbjct: 659  SEHIRSYKADVDNKESVGKKPKFEDSVNFGKVQSKIGRVDSLDDDGFPFIGANLQNGDIV 718

Query: 2301 IGKHAASGVDHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQ 2480
            +G+ A SG DHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQ
Sbjct: 719  VGRCAESGADHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQ 778

Query: 2481 KGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATP 2660
            KGVLGFLESQENFPFT QGIVPDIV+NPHAFPSRQTPGQ                KYATP
Sbjct: 779  KGVLGFLESQENFPFTIQGIVPDIVVNPHAFPSRQTPGQLLEAALGKGIACGGLQKYATP 838

Query: 2661 FSTPSVEDITSQLHRLGFTRWGNERVYDGRTGEMVDSLIFMGPTCYQRLTHMAEDKVKFR 2840
            FST SV+ +T QLHR GF+RWG+ERVY+GRTGEM+ SL+FMGPT YQRLTHM+EDKVKFR
Sbjct: 839  FSTLSVDAVTDQLHRAGFSRWGSERVYNGRTGEMIHSLVFMGPTFYQRLTHMSEDKVKFR 898

Query: 2841 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICRKC 3020
            NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICRKC
Sbjct: 899  NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICRKC 958


>ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|222865766|gb|EEF02897.1|
            predicted protein [Populus trichocarpa]
          Length = 1160

 Score = 1368 bits (3541), Expect = 0.0
 Identities = 676/1003 (67%), Positives = 797/1003 (79%), Gaps = 5/1003 (0%)
 Frame = +3

Query: 30   LFPRHARLQNMTYASKIRVEAHLQVYTEGISRSDKFKTGVEKFVEKKIVSEYHDVVNFGR 209
            +FPRHARLQNMTY++++++  ++QVYT+ + RSDKFKTG++K V+K +V   +  +  GR
Sbjct: 111  MFPRHARLQNMTYSARMKIHVNVQVYTQTVGRSDKFKTGIDKVVQKNVVHTENREIIIGR 170

Query: 210  LPVMVKSNLCFMKNVEKRDCEFDEGGYFVIKGAEKTFIAQEQICLKRLWVAKDPTWTVSY 389
            +PVMVKS+LC++  VEK DC+FD GGYF+IKGAEK FIAQEQIC+KRLW++    WTVSY
Sbjct: 171  IPVMVKSDLCWLTTVEKGDCDFDHGGYFLIKGAEKVFIAQEQICMKRLWISNSQGWTVSY 230

Query: 390  RPVSKRNRVYIKLVP--KLEQVLGGEKILSVYFFVTEIPLWILFFALGVSNDREAVKLID 563
            +   KRNR+ ++LV   KLE + G +K L VYF  TEIPLWILFFALGV +D+E + LID
Sbjct: 231  KSEVKRNRLIVRLVELSKLEYIKGEKKGLCVYFLSTEIPLWILFFALGVRSDKEVIDLID 290

Query: 564  IDTEDSAIENILIASIYEADKKFEGFRKGGNAIKHIKELMQDCKFPPTESVEDCIRNYLF 743
              + D++I NI  ASI++AD+K E FR+   A+ ++ +L++  +FPP ES+ED I  YLF
Sbjct: 291  YASNDASIVNIFFASIHDADEKCEHFRREDRALDYVDKLLKKTRFPPKESIEDAISAYLF 350

Query: 744  PHLKSPAQKASFLAYMVKCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXXKVHIKHAE 923
            P L S   KA FL YMVKCLLEAY G RK DNRD  RNK             KVH+ HA 
Sbjct: 351  PRLNSRRHKARFLGYMVKCLLEAYTGHRKCDNRDSFRNKRFELASELLERELKVHVSHAL 410

Query: 924  RRMVKAIQKDL--DKDIQSIGLYLDASIITNGLSRAFSTGAWVHPYKRMERTSGVVATLR 1097
            RRM KA+Q+DL  D+D+  I  YLDASI+TNGL+RAFSTGAW HP+K MER SGVV  L 
Sbjct: 411  RRMTKALQRDLYGDRDVHPIEHYLDASIVTNGLTRAFSTGAWCHPFKWMERVSGVVGNLG 470

Query: 1098 RTNPLQAAADMRKTRQQVSYTGRVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASTGL 1277
            R NPLQ   D+RKTRQQV YTG+VGDARYPHPSHWG++CFLSTPDGENCGLVKNLA TG+
Sbjct: 471  RANPLQTMIDLRKTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNLAVTGV 530

Query: 1278 VSTHVLEREVLLRKFQECGMENLVDDASFLRDGKHKVFLDGDWVGMCKDSSSFVAKLRRR 1457
            VST++ E   L+ K  + GME LVDD     DGKHKVFL+G+WVG+C+DS  FV +LR  
Sbjct: 531  VSTNISES--LVDKLFDSGMEKLVDDTYTKLDGKHKVFLNGEWVGVCEDSCLFVGELRSM 588

Query: 1458 RRKVEVPHQIEIKRDKHHAEVRIFADAGRILRPLLVVQNLKKIKELKG-DFMFQSLLDNX 1634
            RR+ E+P+Q+EIKRD+   EVRIF+DAGRILRPLLVV+NL KIK  KG +++F SLLD  
Sbjct: 589  RRRRELPYQVEIKRDEQQREVRIFSDAGRILRPLLVVENLDKIKAFKGGNYIFTSLLDKG 648

Query: 1635 XXXXXXXXXXXDCQTAWGIKYLFTAELENPPVKYTHCELDSSFLLGLSCGLIPFANHDHA 1814
                       DC TAWGIK+L        P+KY+HCELD SFLLGLSCG+IPFANHDHA
Sbjct: 649  IIEFIGTEEEEDCCTAWGIKFLLADIEGKQPMKYSHCELDMSFLLGLSCGIIPFANHDHA 708

Query: 1815 RRVLYQSEKHSQQAIGYSTTNSNIRVDTNSHQLYYPQRPLFRTMLADCLGKSTYSHHHKG 1994
            RRVLYQ++KHSQQAIG+STTN NIRVDT SHQL+YPQRPLFRTM++DCL           
Sbjct: 709  RRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLHYPQRPLFRTMISDCL----------- 757

Query: 1995 MIPRPEFFNSQCAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAELENAEAGG 2174
            ++P+PE FN Q AIVAVNVHLGYNQEDSLVMNR+SLERGMFRSEH+RSYKAE++N E   
Sbjct: 758  VLPKPELFNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKELTD 817

Query: 2175 KKVKTDELVSFGKMPSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAASGVDHSIKLKHT 2354
            K+ K+++ ++FGK+ SKIGRVDSLDDDGFP+IGAN+Q+GDIVIGK A SG DHS+KLKHT
Sbjct: 818  KRRKSEDSITFGKIQSKIGRVDSLDDDGFPFIGANMQSGDIVIGKCAESGADHSVKLKHT 877

Query: 2355 ERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTKQ 2534
            ERGMVQKVVLS+NDEGKNFAVVSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFT Q
Sbjct: 878  ERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 937

Query: 2535 GIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVEDITSQLHRLGF 2714
            G+VPDIVINPHAFPSRQTPGQ                +YATPFST SV+DI  QLHR  F
Sbjct: 938  GVVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKRYATPFSTLSVDDIIDQLHRAKF 997

Query: 2715 TRWGNERVYDGRTGEMVDSLIFMGPTCYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKR 2894
            +RWGNERVY+GRTGEMV SLIFMGPT YQRL HMAEDKVKFRNTGPVHPLTRQPVADRKR
Sbjct: 998  SRWGNERVYNGRTGEMVRSLIFMGPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVADRKR 1057

Query: 2895 FGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICRKCQ 3023
            FGGIKFGEMERDCLIAHGA+ANLHERLFTLSDSS+MHIC+KC+
Sbjct: 1058 FGGIKFGEMERDCLIAHGASANLHERLFTLSDSSEMHICQKCK 1100