BLASTX nr result
ID: Scutellaria23_contig00000680
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Scutellaria23_contig00000680
(1368 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004146391.1| PREDICTED: chloroplast stem-loop binding pro... 627 e-177
ref|NP_172405.1| RNA binding protein [Arabidopsis thaliana] gi|7... 624 e-176
ref|XP_003554610.1| PREDICTED: uncharacterized protein At1g09340... 623 e-176
emb|CAA71589.1| g5bf [Arabidopsis thaliana] 622 e-176
gb|AAL32648.1| g5bf protein [Arabidopsis thaliana] 622 e-176
>ref|XP_004146391.1| PREDICTED: chloroplast stem-loop binding protein of 41 kDa b,
chloroplastic-like [Cucumis sativus]
gi|449480815|ref|XP_004156003.1| PREDICTED: chloroplast
stem-loop binding protein of 41 kDa b, chloroplastic-like
[Cucumis sativus]
Length = 383
Score = 627 bits (1617), Expect = e-177
Identities = 305/380 (80%), Positives = 336/380 (88%), Gaps = 2/380 (0%)
Frame = -3
Query: 1273 MMATMVVVQHKQPXXXXXXXXXXSHFNGARVTSSVQYKRK--QLKGAFRVIASSSKKILI 1100
+MA + H++ S FNGAR+ + VQYKRK Q KG V AS+ K ILI
Sbjct: 3 IMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNILI 62
Query: 1099 MGGTRFIGLFLSRLLVKEGHQVTLFTRGKAPIAQQLPEESDADFSDFASKILHLKGDRKD 920
MGGTRFIG+FLSRLLVKEGHQVTLFTRGKAP+ QQLP ES+AD++DF SKILHLKGDRKD
Sbjct: 63 MGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDRKD 122
Query: 919 FDFVRSSLKAEGFDAVYDINGREANEVEPILDALPNLEQYIYCSSAGVYLKTDTPPHFET 740
FDFV+SSL A GFD VYDINGREA+EVEPI+DALP LEQ+IYCSSAGVYLK+D PHFE
Sbjct: 123 FDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHFEV 182
Query: 739 DAVDPKSRHKGKLETESLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIP 560
DAVDPKSRHKGKLETESLL S+DVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIP
Sbjct: 183 DAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIP 242
Query: 559 NSGLQITQLGHVKDLATAFIKVLGNEKASKEIFNISGEKYVTFDGLAKACAKAAGFPEPE 380
NSG+QITQLGHVKDLA AF++VLGN+KAS+++FNISGEKYV+FDGLAKACAKA GFPEPE
Sbjct: 243 NSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPEPE 302
Query: 379 LIHYNPKEFDFGKKKPFPFRDQHFFASVEKAKRVLGWTPEFDLVEGLADSYKLDFGKGTF 200
++HYNPKEFDFGKKKPFPFRDQHFFAS+EKAK VLGW PEFDLVEGLADSY LDFG+GTF
Sbjct: 303 IVHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTF 362
Query: 199 RKEADFSTDDIILGKTLVLQ 140
RKEADFSTDDIILGK+LVLQ
Sbjct: 363 RKEADFSTDDIILGKSLVLQ 382
>ref|NP_172405.1| RNA binding protein [Arabidopsis thaliana]
gi|75313128|sp|Q9SA52.1|CP41B_ARATH RecName:
Full=Chloroplast stem-loop binding protein of 41 kDa b,
chloroplastic; Short=CSP41-b; AltName:
Full=Heteroglycan-interacting protein 1.3; AltName:
Full=Protein CHLOROPLAST RNA BINDING; AltName:
Full=Protein Gb5f; Flags: Precursor
gi|11762234|gb|AAG40395.1|AF325043_1 At1g09340
[Arabidopsis thaliana]
gi|16226247|gb|AAL16114.1|AF428282_1 At1g09340/T31J12_6
[Arabidopsis thaliana] gi|4337177|gb|AAD18098.1|
Identical to gb|Y10557 g5bf gene from Arabidopsis
thaliana. ESTs gb|R30578, gb|R90475, gb|T22384,
gb|T22425, gb|N64934 and gb|T46767 come from this gene
[Arabidopsis thaliana] gi|14334754|gb|AAK59555.1|
putative RNA-binding protein [Arabidopsis thaliana]
gi|17979099|gb|AAL47493.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|332190310|gb|AEE28431.1| RNA
binding protein [Arabidopsis thaliana]
Length = 378
Score = 624 bits (1608), Expect = e-176
Identities = 309/379 (81%), Positives = 334/379 (88%), Gaps = 2/379 (0%)
Frame = -3
Query: 1270 MATMVVVQHKQPXXXXXXXXXXSHFNGARVTSSVQYKRK--QLKGAFRVIASSSKKILIM 1097
MA M+++Q QP FNGA++ VQYKRK Q KGA V ASS KKILIM
Sbjct: 1 MAKMMMLQQHQPSFSLLTSSLSD-FNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIM 59
Query: 1096 GGTRFIGLFLSRLLVKEGHQVTLFTRGKAPIAQQLPEESDADFSDFASKILHLKGDRKDF 917
GGTRFIGLFLSR+LVKEGHQVTLFTRGK+PIA+QLP ESD DF+DF+SKILHLKGDRKD+
Sbjct: 60 GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119
Query: 916 DFVRSSLKAEGFDAVYDINGREANEVEPILDALPNLEQYIYCSSAGVYLKTDTPPHFETD 737
DFV+SSL AEGFD VYDINGREA EVEPIL+ALP LEQYIYCSSAGVYLK+D PH E D
Sbjct: 120 DFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEED 179
Query: 736 AVDPKSRHKGKLETESLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 557
AVDPKSRHKGKLETESLLQS+ VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PN
Sbjct: 180 AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 239
Query: 556 SGLQITQLGHVKDLATAFIKVLGNEKASKEIFNISGEKYVTFDGLAKACAKAAGFPEPEL 377
SG+QI+QLGHVKDLATAF+ VLGNEKAS+EIFNISGEKYVTFDGLAKACAKA GFPEPE+
Sbjct: 240 SGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEI 299
Query: 376 IHYNPKEFDFGKKKPFPFRDQHFFASVEKAKRVLGWTPEFDLVEGLADSYKLDFGKGTFR 197
+HYNPKEFDFGKKK FPFRDQHFFASVEKAK VLGW PEFDLVEGL DSY LDFG+GTFR
Sbjct: 300 VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFR 359
Query: 196 KEADFSTDDIILGKTLVLQ 140
KEADF+TDD+IL K LVLQ
Sbjct: 360 KEADFTTDDMILSKKLVLQ 378
>ref|XP_003554610.1| PREDICTED: uncharacterized protein At1g09340, chloroplastic-like
[Glycine max]
Length = 378
Score = 623 bits (1607), Expect = e-176
Identities = 303/353 (85%), Positives = 330/353 (93%), Gaps = 2/353 (0%)
Frame = -3
Query: 1198 FNGARVTSSVQYKRKQL--KGAFRVIASSSKKILIMGGTRFIGLFLSRLLVKEGHQVTLF 1025
F+G R+ + +Q+KRK KG+F V ASS+KKILIMGGTRFIG+FLSRLLVKEGHQVTLF
Sbjct: 24 FSGTRLQTQLQFKRKLCHPKGSFYVSASSTKKILIMGGTRFIGVFLSRLLVKEGHQVTLF 83
Query: 1024 TRGKAPIAQQLPEESDADFSDFASKILHLKGDRKDFDFVRSSLKAEGFDAVYDINGREAN 845
TRGKAP+ QQLP ESD D++DF+SKILHLKGDRKDFDFV+SSL AEGFD VYDINGREA+
Sbjct: 84 TRGKAPVTQQLPGESDNDYADFSSKILHLKGDRKDFDFVKSSLSAEGFDVVYDINGREAD 143
Query: 844 EVEPILDALPNLEQYIYCSSAGVYLKTDTPPHFETDAVDPKSRHKGKLETESLLQSRDVN 665
EVEPILDALPNLEQ+IYCSSAGVYLK+D PH ETDAVDPKSRHKGKLETESLLQ+R VN
Sbjct: 144 EVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAETDAVDPKSRHKGKLETESLLQARGVN 203
Query: 664 WTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGLQITQLGHVKDLATAFIKVLGN 485
WTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIP+SGLQITQLGHVKDLATAFI+VLGN
Sbjct: 204 WTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPSSGLQITQLGHVKDLATAFIQVLGN 263
Query: 484 EKASKEIFNISGEKYVTFDGLAKACAKAAGFPEPELIHYNPKEFDFGKKKPFPFRDQHFF 305
EKASKE+FNISGEKYVTFDGLA+ACAKA GFPEPE+IHYNPK+FDFGKKK FPFRDQHFF
Sbjct: 264 EKASKEVFNISGEKYVTFDGLARACAKAGGFPEPEIIHYNPKDFDFGKKKSFPFRDQHFF 323
Query: 304 ASVEKAKRVLGWTPEFDLVEGLADSYKLDFGKGTFRKEADFSTDDIILGKTLV 146
AS+EKAKRVLGW PEF LVEGLADSY LDFG+GT+RKEADFSTDDIILGK+LV
Sbjct: 324 ASIEKAKRVLGWEPEFGLVEGLADSYNLDFGRGTYRKEADFSTDDIILGKSLV 376
>emb|CAA71589.1| g5bf [Arabidopsis thaliana]
Length = 378
Score = 622 bits (1605), Expect = e-176
Identities = 309/379 (81%), Positives = 333/379 (87%), Gaps = 2/379 (0%)
Frame = -3
Query: 1270 MATMVVVQHKQPXXXXXXXXXXSHFNGARVTSSVQYKRK--QLKGAFRVIASSSKKILIM 1097
MA M+++Q QP FNGA++ VQYKRK Q KGA V ASS KKILIM
Sbjct: 1 MAKMMMLQQHQPSFSLLTSSLSD-FNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIM 59
Query: 1096 GGTRFIGLFLSRLLVKEGHQVTLFTRGKAPIAQQLPEESDADFSDFASKILHLKGDRKDF 917
GGTRFIGLFLSR+LVKEGHQVTLFTRGK+PIA+QLP ESD DF+DF+SKILHLKGDRKD+
Sbjct: 60 GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119
Query: 916 DFVRSSLKAEGFDAVYDINGREANEVEPILDALPNLEQYIYCSSAGVYLKTDTPPHFETD 737
DFV+SSL AEGFD VYDINGREA EVEPIL+ALP LEQYIYCSSAGVYLK D PH E D
Sbjct: 120 DFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKFDILPHCEED 179
Query: 736 AVDPKSRHKGKLETESLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 557
AVDPKSRHKGKLETESLLQS+ VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PN
Sbjct: 180 AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 239
Query: 556 SGLQITQLGHVKDLATAFIKVLGNEKASKEIFNISGEKYVTFDGLAKACAKAAGFPEPEL 377
SG+QI+QLGHVKDLATAF+ VLGNEKAS+EIFNISGEKYVTFDGLAKACAKA GFPEPE+
Sbjct: 240 SGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEI 299
Query: 376 IHYNPKEFDFGKKKPFPFRDQHFFASVEKAKRVLGWTPEFDLVEGLADSYKLDFGKGTFR 197
+HYNPKEFDFGKKK FPFRDQHFFASVEKAK VLGW PEFDLVEGL DSY LDFG+GTFR
Sbjct: 300 VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFR 359
Query: 196 KEADFSTDDIILGKTLVLQ 140
KEADF+TDD+IL K LVLQ
Sbjct: 360 KEADFTTDDMILSKKLVLQ 378
>gb|AAL32648.1| g5bf protein [Arabidopsis thaliana]
Length = 378
Score = 622 bits (1604), Expect = e-176
Identities = 308/379 (81%), Positives = 334/379 (88%), Gaps = 2/379 (0%)
Frame = -3
Query: 1270 MATMVVVQHKQPXXXXXXXXXXSHFNGARVTSSVQYKRK--QLKGAFRVIASSSKKILIM 1097
MA M+++Q QP FNGA++ VQYKRK Q KGA V ASS KKILIM
Sbjct: 1 MAKMMMLQQHQPSFSLLTSSLSD-FNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIM 59
Query: 1096 GGTRFIGLFLSRLLVKEGHQVTLFTRGKAPIAQQLPEESDADFSDFASKILHLKGDRKDF 917
GGTRFIGLFLSR+LVKEGHQVTLFTRGK+PIA+QLP ESD DF+DF+SKILHLKGDRKD+
Sbjct: 60 GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119
Query: 916 DFVRSSLKAEGFDAVYDINGREANEVEPILDALPNLEQYIYCSSAGVYLKTDTPPHFETD 737
DFV+SSL AEGFD VYDINGREA EVEPIL+ALP LEQYIYCSSAGVYLK+D PH E D
Sbjct: 120 DFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEED 179
Query: 736 AVDPKSRHKGKLETESLLQSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 557
AVDPKSRHKGKLETESLLQS+ VNWTSIRPVYIYGPLNYNPVE+WFFHRLKAGRPIP+PN
Sbjct: 180 AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEKWFFHRLKAGRPIPVPN 239
Query: 556 SGLQITQLGHVKDLATAFIKVLGNEKASKEIFNISGEKYVTFDGLAKACAKAAGFPEPEL 377
SG+QI+QLGHVKDLATAF+ VLGNEKAS+EIFNISGEKYVTFDGLAKACAKA GFPEPE+
Sbjct: 240 SGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEI 299
Query: 376 IHYNPKEFDFGKKKPFPFRDQHFFASVEKAKRVLGWTPEFDLVEGLADSYKLDFGKGTFR 197
+HYNPKEFDFGKKK FPFRDQHFFASVEKAK VLGW PEFDLVEGL DSY LDFG+GTFR
Sbjct: 300 VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFR 359
Query: 196 KEADFSTDDIILGKTLVLQ 140
KEADF+TDD+IL K LVLQ
Sbjct: 360 KEADFTTDDMILSKKLVLQ 378