BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria23_contig00000225
         (1969 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   581   e-163
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      579   e-162
dbj|BAA88922.1| sigma factor [Nicotiana tabacum]                      576   e-162
emb|CBI26421.3| unnamed protein product [Vitis vinifera]              575   e-161
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   573   e-161

>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  581 bits (1497), Expect = e-163
 Identities = 327/509 (64%), Positives = 377/509 (74%), Gaps = 24/509 (4%)
 Frame = -2

Query: 1797 MATAAVFGLSAAKRLLLGSTFYYXXXXXXXXXXXD------PLPPTAKTVVSAKKXXXXX 1636
            MATAAV GLSA KRLL  STFYY           +       +  T   +V+ K      
Sbjct: 1    MATAAVIGLSAGKRLL-SSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGP 59

Query: 1635 XXXSYNRRPQSIKALKQHVDTSNPLEPWV--------IHEEDSGEVYLVDAVLLLQKSML 1480
               S NR  QSIKALK+HVDT++              + EE S   Y V+A+LLLQKSML
Sbjct: 60   SFPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSML 119

Query: 1479 EKQWKLSVIPKXXXXXXXRASK----VTSSGTSARRRRLDCKRRSMTMN------NRSKQ 1330
            EKQW LS           R S+    VT SG SAR+RR++ +R++++ +      N  KQ
Sbjct: 120  EKQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTVQANVFKQ 179

Query: 1329 WKSVISPQLLHNSLKGYVKGVVSEQLLTHSQVVLLSQKIKAGXXXXXXXXXXXXXLGCEP 1150
             KS +SP+LL N LKGYVKGVVSE+LL+H++VV LS+ IKAG             LGC+P
Sbjct: 180  LKSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDP 239

Query: 1149 SDDQLAASLRITRPALQSKMIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADXXXXXX 970
            SD+Q+A SL+I+R  LQSK I CSLAREKLAMSNVRLVMSIAQRYDNMGAEMAD      
Sbjct: 240  SDEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 299

Query: 969  XXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVESSRTLRLPTHLHERLSLIRNAKAR 790
                  IEKFDSSKGF+ISTYVYWWIRQGVSRALVE+SRTLRLP HLHERL LIRNAK R
Sbjct: 300  IGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIR 359

Query: 789  LEERGITPSIDRIAESLNMSQRKVRNATEAVSKVFSLDREAFPSLNGLPGETLHSYIADN 610
            LEE+G+TPSIDRIAESLN+SQ+KVRNATEAVSKVFSLDREAFPSLNGLPGET HSYIADN
Sbjct: 360  LEEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIADN 419

Query: 609  RVENNPWNGVDEWALKDEVDKLINATLRERERDIIRLYYGLDNECLTWEDISRRIGLSRE 430
             +ENNPW+GVD+WALKDEV+KLIN TL+ERE++IIRLYYGLDNE LTWEDIS+RIGLSRE
Sbjct: 420  CLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDISKRIGLSRE 479

Query: 429  RVRQVGLVALEKLKHAARKRRLDAMLVQH 343
            RVRQVGLVALEKLKHAARK++L+AMLV+H
Sbjct: 480  RVRQVGLVALEKLKHAARKKKLEAMLVKH 508


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  579 bits (1492), Expect = e-162
 Identities = 318/507 (62%), Positives = 377/507 (74%), Gaps = 22/507 (4%)
 Frame = -2

Query: 1800 IMATAAVFGLSAAKRLLLGSTFYYXXXXXXXXXXXDPLP----PTAKTVVSAKKXXXXXX 1633
            +M+TAAV GLSA KRLL  S +Y              LP    P+ K V++AKK      
Sbjct: 1    MMSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSP 60

Query: 1632 XXSYNRRPQSIKALKQHVD-TSNPLE--PWV-----IHEEDSGEVYLVDAVLLLQKSMLE 1477
                +R+ QS K+LK+HVD T++P +   W      +  E   E   V+ +LLLQKSMLE
Sbjct: 61   SCVSSRKSQSAKSLKEHVDITADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSMLE 120

Query: 1476 KQWKLSV----IPKXXXXXXXRASKVTSSGTSARRRRLDCKRR------SMTMNNRSKQW 1327
            KQW LS+              +   +T SGTSARRRR+D ++R      S T  + +K  
Sbjct: 121  KQWNLSLEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRVLDRHSSATPTSAAKPL 180

Query: 1326 KSVISPQLLHNSLKGYVKGVVSEQLLTHSQVVLLSQKIKAGXXXXXXXXXXXXXLGCEPS 1147
            +S+I P+LL N LKGYVKGVVSE+LLTH++V+ LS+KI+ G             LGCEPS
Sbjct: 181  RSIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCEPS 240

Query: 1146 DDQLAASLRITRPALQSKMIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADXXXXXXX 967
            DDQLA SL+++R  LQS +IECSLARE+LAMSNVRLVMSIAQRYDN+GAEMAD       
Sbjct: 241  DDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGGLI 300

Query: 966  XXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVESSRTLRLPTHLHERLSLIRNAKARL 787
                 IEKFD SKG+KISTYVYWWIRQGVSRALVE+SRTLRLPT+LHERLSLIRNAKARL
Sbjct: 301  GLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNAKARL 360

Query: 786  EERGITPSIDRIAESLNMSQRKVRNATEAVSKVFSLDREAFPSLNGLPGETLHSYIADNR 607
            EE+GITPS++ IA SLNMSQ+KVRNATEA SK++SLDREAFPSLNGLPGETLHSYIADN 
Sbjct: 361  EEKGITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYIADNH 420

Query: 606  VENNPWNGVDEWALKDEVDKLINATLRERERDIIRLYYGLDNECLTWEDISRRIGLSRER 427
            +ENNPW+GVD WALKDEV+ LI++TLR+RER+IIRLYYGLDNECLTWEDIS+RIGLSRER
Sbjct: 421  LENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNECLTWEDISKRIGLSRER 480

Query: 426  VRQVGLVALEKLKHAARKRRLDAMLVQ 346
            VRQVGLVALEKLKHAARKR+LDAML++
Sbjct: 481  VRQVGLVALEKLKHAARKRQLDAMLIK 507


>dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
          Length = 502

 Score =  576 bits (1484), Expect = e-162
 Identities = 321/506 (63%), Positives = 369/506 (72%), Gaps = 25/506 (4%)
 Frame = -2

Query: 1785 AVFGLSAAKRLLLGSTFYYXXXXXXXXXXXDPLP----PTAKTVVSAKKXXXXXXXXSYN 1618
            A+ GLSA  R+L  S+FYY             LP    P+ K V++AK           N
Sbjct: 3    AIIGLSAGNRIL-SSSFYYSVLTEKFCVSDHALPCHHFPSPKNVINAKNSSNYSPSYVSN 61

Query: 1617 RRPQSIKALKQHVDTSN----PLEPWV----------IHEEDSGEVYLVDAVLLLQKSML 1480
            R+ QS+KALK+HVD ++      EPWV            EEDS EV     +LLLQKSML
Sbjct: 62   RKKQSVKALKEHVDIASNRDSDTEPWVQMFKQLQNGSCSEEDSVEV-----LLLLQKSML 116

Query: 1479 EKQWKLSVIPKXXXXXXXRAS-KVTSSGTSARRRRLDCKRR------SMTMNNRSKQWKS 1321
            EKQW LS           +   ++T SGTSARRRR+D ++R      S T ++ SK+ +S
Sbjct: 117  EKQWNLSAEKAMTNENNCKKKMQITCSGTSARRRRMDTRKRDLLPKNSATSDSSSKRLRS 176

Query: 1320 VISPQLLHNSLKGYVKGVVSEQLLTHSQVVLLSQKIKAGXXXXXXXXXXXXXLGCEPSDD 1141
            VI P+LL N  KGY+ GVV ++LLTH++VV LS+KIK G             LGCEPSDD
Sbjct: 177  VIGPELLQNRSKGYINGVVGQELLTHTEVVQLSKKIKFGLYLEEQKSRLKERLGCEPSDD 236

Query: 1140 QLAASLRITRPALQSKMIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADXXXXXXXXX 961
            QLA SL+I+R  L+S +IECSLAREKLAMSNVRLVMSIAQRYD  G EMAD         
Sbjct: 237  QLAISLKISRADLRSTLIECSLAREKLAMSNVRLVMSIAQRYDTNGTEMADLIQGGLIGL 296

Query: 960  XXXIEKFDSSKGFKISTYVYWWIRQGVSRALVESSRTLRLPTHLHERLSLIRNAKARLEE 781
               IEKFD S+GFKISTYVYWWIRQGVSRALVE+SRTLRLP HLHERLSLIRNAK +L+E
Sbjct: 297  LRGIEKFDHSRGFKISTYVYWWIRQGVSRALVENSRTLRLPIHLHERLSLIRNAKIKLKE 356

Query: 780  RGITPSIDRIAESLNMSQRKVRNATEAVSKVFSLDREAFPSLNGLPGETLHSYIADNRVE 601
             GITPSI++IAE LNMSQ+KVRNATEA SKVFSLDREAFPSLNGLPGETLHSYIADNR+E
Sbjct: 357  NGITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAFPSLNGLPGETLHSYIADNRLE 416

Query: 600  NNPWNGVDEWALKDEVDKLINATLRERERDIIRLYYGLDNECLTWEDISRRIGLSRERVR 421
            N PW+GVDEW LKDEV+ LI++TLRERER+I+RLYYGLDNECLTWEDISRRIGLSRERVR
Sbjct: 417  NIPWHGVDEWMLKDEVNNLISSTLREREREIVRLYYGLDNECLTWEDISRRIGLSRERVR 476

Query: 420  QVGLVALEKLKHAARKRRLDAMLVQH 343
            QVGLVALEKLKHAARKRRLDAMLV+H
Sbjct: 477  QVGLVALEKLKHAARKRRLDAMLVKH 502


>emb|CBI26421.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  575 bits (1482), Expect = e-161
 Identities = 327/499 (65%), Positives = 373/499 (74%), Gaps = 11/499 (2%)
 Frame = -2

Query: 1806 SMIMATAAVFGLSAAKRLLLGSTFY------YXXXXXXXXXXXDPLPPTAKTVVSAKKXX 1645
            S +M TAAV GLSA  RLL  S  Y                   P PP  K ++SAKK  
Sbjct: 70   SHMMGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFPHHPSPPP-KNLISAKKPS 128

Query: 1644 XXXXXXSYNRRPQSIKALKQHVDTSNP---LEPWVIHE--EDSGEVYLVDAVLLLQKSML 1480
                    NR  QS+KALK+HV++++     +P +     E   E YLV+A LLLQKSML
Sbjct: 129  NYTPSS--NRSIQSMKALKEHVESASAPSTADPDLSSSSSEVEDEEYLVEAFLLLQKSML 186

Query: 1479 EKQWKLSVIPKXXXXXXXRASKVTSSGTSARRRRLDCKRRSMTMNNRSKQWKSVISPQLL 1300
            EKQW LS   +          +VT SGTSAR+RR+  ++R M   ++S+    V +   +
Sbjct: 187  EKQWNLSFKARQKRR------EVTCSGTSARQRRISGRKRVMNEKSKSR----VRAALGV 236

Query: 1299 HNSLKGYVKGVVSEQLLTHSQVVLLSQKIKAGXXXXXXXXXXXXXLGCEPSDDQLAASLR 1120
             N LKGYVKGVVSE+LLTH+QVVLLS KIKAG             +G EP+D+Q+AASLR
Sbjct: 237  ENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAASLR 296

Query: 1119 ITRPALQSKMIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADXXXXXXXXXXXXIEKF 940
            ++R  LQSK+IECSLAREKLAMSNVRLVMSIAQRYDNMGAEMAD            IEKF
Sbjct: 297  MSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKF 356

Query: 939  DSSKGFKISTYVYWWIRQGVSRALVESSRTLRLPTHLHERLSLIRNAKARLEERGITPSI 760
            DSSKGFKISTYVYWWIRQGVSRALVE+SRTLRLP+HLHERLSLIRNAK RLEE+GITPSI
Sbjct: 357  DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKGITPSI 416

Query: 759  DRIAESLNMSQRKVRNATEAVSKVFSLDREAFPSLNGLPGETLHSYIADNRVENNPWNGV 580
            DRIAE LNMSQ+KVRNATEA+SKVFSLDREAFPSLNGLPGETLHSYIAD R+ENNPW+GV
Sbjct: 417  DRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWHGV 476

Query: 579  DEWALKDEVDKLINATLRERERDIIRLYYGLDNECLTWEDISRRIGLSRERVRQVGLVAL 400
            DEWALKDEV+KLIN TL ERERDIIRLYYGLDNECLTWEDIS+RIGLSRERVRQVGLVAL
Sbjct: 477  DEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKRIGLSRERVRQVGLVAL 536

Query: 399  EKLKHAARKRRLDAMLVQH 343
            EKLK+AARK R++AMLV++
Sbjct: 537  EKLKNAARKGRMEAMLVKY 555


>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
            vinifera]
          Length = 497

 Score =  573 bits (1478), Expect = e-161
 Identities = 327/504 (64%), Positives = 372/504 (73%), Gaps = 18/504 (3%)
 Frame = -2

Query: 1800 IMATAAVFGLSAAKRLLLGSTFY------YXXXXXXXXXXXDPLPPTAKTVVSAKKXXXX 1639
            +M TAAV GLSA  RLL  S  Y                   P PP  K ++SAKK    
Sbjct: 1    MMGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFPHHPSPPP-KNLISAKKPSNY 59

Query: 1638 XXXXSYNRRPQSIKALKQHVDTSNP---LEPWVIHE--EDSGEVYLVDAVLLLQKSMLEK 1474
                  NR  QS+KALK+HV++++     +P +     E   E YLV+A LLLQKSMLEK
Sbjct: 60   TPSS--NRSIQSMKALKEHVESASAPSTADPDLSSSSSEVEDEEYLVEAFLLLQKSMLEK 117

Query: 1473 QWKLSVIPKXXXXXXXRASK-------VTSSGTSARRRRLDCKRRSMTMNNRSKQWKSVI 1315
            QW LS   +          K       VT SGTSAR+RR+  ++R M   ++S+    V 
Sbjct: 118  QWNLSFEEEEEEEEEDMGKKARQKRREVTCSGTSARQRRISGRKRVMNEKSKSR----VR 173

Query: 1314 SPQLLHNSLKGYVKGVVSEQLLTHSQVVLLSQKIKAGXXXXXXXXXXXXXLGCEPSDDQL 1135
            +   + N LKGYVKGVVSE+LLTH+QVVLLS KIKAG             +G EP+D+Q+
Sbjct: 174  AALGVENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQV 233

Query: 1134 AASLRITRPALQSKMIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADXXXXXXXXXXX 955
            AASLR++R  LQSK+IECSLAREKLAMSNVRLVMSIAQRYDNMGAEMAD           
Sbjct: 234  AASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLR 293

Query: 954  XIEKFDSSKGFKISTYVYWWIRQGVSRALVESSRTLRLPTHLHERLSLIRNAKARLEERG 775
             IEKFDSSKGFKISTYVYWWIRQGVSRALVE+SRTLRLP+HLHERLSLIRNAK RLEE+G
Sbjct: 294  GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKG 353

Query: 774  ITPSIDRIAESLNMSQRKVRNATEAVSKVFSLDREAFPSLNGLPGETLHSYIADNRVENN 595
            ITPSIDRIAE LNMSQ+KVRNATEA+SKVFSLDREAFPSLNGLPGETLHSYIAD R+ENN
Sbjct: 354  ITPSIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENN 413

Query: 594  PWNGVDEWALKDEVDKLINATLRERERDIIRLYYGLDNECLTWEDISRRIGLSRERVRQV 415
            PW+GVDEWALKDEV+KLIN TL ERERDIIRLYYGLDNECLTWEDIS+RIGLSRERVRQV
Sbjct: 414  PWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKRIGLSRERVRQV 473

Query: 414  GLVALEKLKHAARKRRLDAMLVQH 343
            GLVALEKLK+AARK R++AMLV++
Sbjct: 474  GLVALEKLKNAARKGRMEAMLVKY 497