BLASTX nr result

ID: Scutellaria22_contig00023689 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria22_contig00023689
         (202 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002323869.1| predicted protein [Populus trichocarpa] gi|2...    67   2e-09
ref|XP_003553062.1| PREDICTED: pentatricopeptide repeat-containi...    63   3e-08
ref|XP_002533116.1| pentatricopeptide repeat-containing protein,...    62   6e-08
emb|CBI22241.3| unnamed protein product [Vitis vinifera]               60   1e-07
ref|XP_002278558.1| PREDICTED: pentatricopeptide repeat-containi...    60   1e-07

>ref|XP_002323869.1| predicted protein [Populus trichocarpa] gi|222866871|gb|EEF04002.1|
            predicted protein [Populus trichocarpa]
          Length = 1158

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 28/46 (60%), Positives = 37/46 (80%)
 Frame = +2

Query: 2    LGETPSRGAFCSLINKYRSEKNFGKTSKLLKVMQQKGYEPDFDTHW 139
            +GETP+R  +CS+I+ YR E N  K S+L+++MQQ GYEPDFDTHW
Sbjct: 1071 VGETPTRLMYCSVIDGYRMENNPRKASELMQMMQQSGYEPDFDTHW 1116


>ref|XP_003553062.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like
            [Glycine max]
          Length = 1186

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 24/45 (53%), Positives = 34/45 (75%)
 Frame = +2

Query: 5    GETPSRGAFCSLINKYRSEKNFGKTSKLLKVMQQKGYEPDFDTHW 139
            GETP+R  +C++I  Y  +KN  K S+LL+ MQ+ GY+PDF+THW
Sbjct: 1107 GETPTRKMYCTVIKSYHMKKNLRKASELLQAMQENGYQPDFETHW 1151


>ref|XP_002533116.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223527079|gb|EEF29261.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 1204

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 26/46 (56%), Positives = 35/46 (76%)
 Frame = +2

Query: 2    LGETPSRGAFCSLINKYRSEKNFGKTSKLLKVMQQKGYEPDFDTHW 139
            LGETP    + ++IN+YR E N  K S+L+++MQ+ GYEPDFDTHW
Sbjct: 1111 LGETPPGKMYSTVINRYRFENNPRKASQLMQMMQRNGYEPDFDTHW 1156


>emb|CBI22241.3| unnamed protein product [Vitis vinifera]
          Length = 1256

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 26/46 (56%), Positives = 33/46 (71%)
 Frame = +2

Query: 2    LGETPSRGAFCSLINKYRSEKNFGKTSKLLKVMQQKGYEPDFDTHW 139
            +GETP+R  + SLIN+ RSE N  K S+LL+ MQ  G+ PDF THW
Sbjct: 1173 MGETPTREMYTSLINRLRSENNLSKASELLQAMQLSGHAPDFGTHW 1218


>ref|XP_002278558.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like
            [Vitis vinifera]
          Length = 1273

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 26/46 (56%), Positives = 33/46 (71%)
 Frame = +2

Query: 2    LGETPSRGAFCSLINKYRSEKNFGKTSKLLKVMQQKGYEPDFDTHW 139
            +GETP+R  + SLIN+ RSE N  K S+LL+ MQ  G+ PDF THW
Sbjct: 1190 MGETPTREMYTSLINRLRSENNLSKASELLQAMQLSGHAPDFGTHW 1235


Top