BLASTX nr result
ID: Scutellaria22_contig00021896
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Scutellaria22_contig00021896
(1661 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum ma... 468 e-129
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope... 428 e-117
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 408 e-111
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar... 388 e-105
emb|CBI34757.3| unnamed protein product [Vitis vinifera] 380 e-103
>gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus]
Length = 1112
Score = 468 bits (1204), Expect = e-129
Identities = 239/425 (56%), Positives = 309/425 (72%), Gaps = 14/425 (3%)
Frame = -2
Query: 1660 LRSVIDALYMNSNYSGVKSKITLPKLHITSNVCSEAAIRNESESTICISVALTQ------ 1499
L SV+ L N N + K K+ LP L I + CSEA +S S ICISVA++Q
Sbjct: 679 LESVVHTLRANCNATPKKMKLKLPNLLIENKDCSEADFHEDS-SRICISVAVSQNELSNL 737
Query: 1498 ---SLKEFSDLEILRDLVKPVLLQTVIKGFQEFKKVDILWKDGPN-SKSPRCPSGEMFLR 1331
SLKE+ L+ LR++V PVLL+TV+KGF EFKKVDILWKD + S+ +C SGE ++R
Sbjct: 738 HFGSLKEYEILDYLRNMVIPVLLRTVVKGFPEFKKVDILWKDEQSRSRFSKCSSGEPYVR 797
Query: 1330 VVMSEHCERTKFWNILIDKCLRVKDIIDWERSHPDELLDYSEAYGIDVAWQYFVNNLHCA 1151
V MSE+CER +FWNIL++K LR++ +IDW+RSHPD++ DY EA+GID AW FVN+L+ A
Sbjct: 798 VFMSENCERARFWNILVEKSLRIRSLIDWDRSHPDDVHDYGEAFGIDTAWMCFVNSLNSA 857
Query: 1150 ISDTGKSILPEHLVVTANCLSLTGEFMPLNARGLALQRKETNVCSPFSQACFLNPSDCFV 971
IS+TGK+ILPEHL+ TANCLS+TGEF+ LNA+GLA QRKE + SPF QACF NPSDCF+
Sbjct: 858 ISETGKTILPEHLIATANCLSMTGEFVSLNAKGLAQQRKEATINSPFVQACFSNPSDCFI 917
Query: 970 KAAKLGQTDGLQGSLEALSWGQTPSIGSGCRFDILYNGKGHEPAGPADVYSLLSSHVGHA 791
KAAK+GQ D LQGS+++L+WGQTP IG+G +FDI+Y+GKGHEP+ P DVYSLL+S VG A
Sbjct: 918 KAAKMGQMDNLQGSVDSLAWGQTPPIGTGGQFDIIYSGKGHEPSKPTDVYSLLNSQVGFA 977
Query: 790 KSNPAAE---QVFGKSITSLHFKTKGQKVLLKRMISEHMSVIGIKQISQKLKRILKEYPI 620
K + + Q + S + KT G+K L M S + I+++S LKR+L EY
Sbjct: 978 KPSEKIKLPVQFTSGNDQSQNLKTNGRKRFLAGMKSLRSAEDEIREVSLALKRMLHEYAS 1037
Query: 619 NRQLSGADKSAAETALKFHPRWNEKIGTGLLEIKVGRHPEHNEN-CFFLIRTDGTEEDFS 443
+ QL G DK+ A AL++HPRW EK G G +EIKVGRHP+H E+ CFF+++TDGTEED S
Sbjct: 1038 DCQLRGEDKTLALRALQYHPRWEEKTGAGTVEIKVGRHPDHKESRCFFVVKTDGTEEDIS 1097
Query: 442 YHKCI 428
Y K I
Sbjct: 1098 YRKSI 1102
>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
Length = 1138
Score = 428 bits (1100), Expect = e-117
Identities = 230/445 (51%), Positives = 307/445 (68%), Gaps = 18/445 (4%)
Frame = -2
Query: 1660 LRSVIDALYMNSNYSGVKSKITLPKLHITSNVCSEAAIRNESESTICISVALTQSLKEFS 1481
LRSV+DAL M + K+ LP LHIT CS A ++ E +S ICI+V++ ++ K+ S
Sbjct: 691 LRSVLDALNMRYRAATTKAGNDLPNLHITCKDCSVAEVQKE-KSEICITVSVVETSKDPS 749
Query: 1480 DL-EILRDLVKPVLLQTVIKGFQEFKKVDILWKDGPN-SKSPRCPSGEMFLRVVMSEHCE 1307
L + LRD+V P LL+TVIKGF FKKVDILWK+ P+ SKS R P+GE++L+V MSE C+
Sbjct: 750 SLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGPTGELYLQVFMSESCD 809
Query: 1306 RTKFWNILIDKCLRVKDIIDWERSHPDELLDYSEAYGIDVAWQYFVNNLHCAISDTGKSI 1127
R KFWN L+D CL+++D+IDWERS+PD++ D + AYGIDVAW+YF+ LH A+S+TGK I
Sbjct: 810 RIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKI 869
Query: 1126 LPEHLVVTANCLSLTGEFMPLNARGLALQRKETNVCSPFSQACFLNPSDCFVKAAKLGQT 947
LPEHLV+ A+ L+ TGEF+PL+A+GL LQRK V SPF QACF NP D FV+AAK+G +
Sbjct: 870 LPEHLVLAADSLTTTGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLS 929
Query: 946 DGLQGSLEALSWGQTPSIGSGCRFDILYNGKGHEPAGPADVYSLLSSHVGHAKSNPAAEQ 767
D LQGSLE+L+WG+TPSIG+G FDI+Y+GKG+E A +VY+LL + V P +
Sbjct: 930 DDLQGSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQINVYTLLRNLV--TVDTPNVKV 987
Query: 766 VFGKS--------------ITSLHFKTKGQKVLLKRMISEHMSVIGIKQISQKLKRILKE 629
GK + L K+ ++ ++ S + S IK++SQ LK++L +
Sbjct: 988 TLGKDGGMDGMSLVRRLDRLDDLDKKSCKSELSFTKLRS-YFSFNDIKKLSQSLKQMLSK 1046
Query: 628 YPINRQLSGADKSAAETALKFHPRWNEKIGTGL-LEIKVGRHPE-HNENCFFLIRTDGTE 455
Y I R+L+ ADK A AL+FHPR NEKIG G EIK+G H E CF ++R+D T
Sbjct: 1047 YDIGRELNEADKCLAMMALQFHPRRNEKIGKGAPKEIKIGYHQEFEGSRCFMVVRSDDTV 1106
Query: 454 EDFSYHKCINHALEIIAPEMGKTYR 380
EDFSY KC+ HALE+IAP+ KT R
Sbjct: 1107 EDFSYRKCMQHALELIAPQKAKTSR 1131
>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Vitis vinifera]
Length = 1560
Score = 408 bits (1049), Expect = e-111
Identities = 209/442 (47%), Positives = 281/442 (63%), Gaps = 15/442 (3%)
Frame = -2
Query: 1654 SVIDALYMNSNYSGVKSKITLPKLHITSNVCSEAAIRNESESTICISVALTQSLKEFSDL 1475
S+IDALYM N + +SKI LP L ITS C + E CI+V++ S K L
Sbjct: 1044 SIIDALYMKCNSARAESKINLPDLQITSKDCF-VDMEKEDSDCFCITVSIVNSKKSCIQL 1102
Query: 1474 EILRDLVKPVLLQTVIKGFQEFKKVDILWKDGPNSKSPRCPSGEMFLRVVMSEHCERTKF 1295
+ +RDLV P LL V+KG + KKVDILW D P+S + SG ++LRV +S C + F
Sbjct: 1103 DTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNPDSDVLKSSSGRLYLRVYVSGDCGKKNF 1162
Query: 1294 WNILIDKCLRVKDIIDWERSHPDELLDYSEAYGIDVAWQYFVNNLHCAISDTGKSILPEH 1115
W +L+D CL++ D+IDWERSHPD + D YGID W+YF+N+L AISD GK++LPEH
Sbjct: 1163 WGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEH 1222
Query: 1114 LVVTANCLSLTGEFMPLNARGLALQRKETNVCSPFSQACFLNPSDCFVKAAKLGQTDGLQ 935
L++ A+CLS TGEF+ LNA+G+A Q++ T++ SPF Q CF +P CF+KA K D L
Sbjct: 1223 LLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLH 1282
Query: 934 GSLEALSWGQTPSIGSGCRFDILYNGKGHEPAGPADVYSLLSSHVGHAKSN--------- 782
GSL+AL+WG+ PS+GSG FDILY+ KGHE A P D+Y LL S + N
Sbjct: 1283 GSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITC 1342
Query: 781 -----PAAEQVFGKSITSLHFKTKGQKVLLKRMISEHMSVIGIKQISQKLKRILKEYPIN 617
Q+ + S K + + K ++ +S+ I+++S++LK IL++YPIN
Sbjct: 1343 YQTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPIN 1402
Query: 616 RQLSGADKSAAETALKFHPRWNEKIGTGLLEIKVGRHPE-HNENCFFLIRTDGTEEDFSY 440
QLS DK+ AL FHPR +EKIG G IKV H + HN CF L+RTDGTEEDFSY
Sbjct: 1403 HQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSY 1462
Query: 439 HKCINHALEIIAPEMGKTYRSK 374
HKC++ ALEII P ++Y+S+
Sbjct: 1463 HKCVHGALEIIDPRRARSYQSR 1484
>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
[Populus trichocarpa]
Length = 1517
Score = 388 bits (997), Expect = e-105
Identities = 208/443 (46%), Positives = 288/443 (65%), Gaps = 17/443 (3%)
Frame = -2
Query: 1651 VIDALYMNSNYSGVKSKITLPKLHITSNVCSEAAIRNESESTICISVALTQSLK-EFSDL 1475
+IDAL KSK PK+ ITS C+ A E + T CI+V + ++ K EF +L
Sbjct: 1060 IIDALEKQC-----KSKTRFPKVQITSRYCTVADTWKEKKETFCITVTIVETSKNEFIEL 1114
Query: 1474 EILRDLVKPVLLQTVIKGFQEFKKVDILWKDGPN-SKSPRCPSGEMFLRVVMSEHCERTK 1298
E ++DL+ P LL+TVIKGF E +KVDILW D P KS GE+FLRV MS ++T+
Sbjct: 1115 ETIQDLMIPFLLETVIKGFMEIQKVDILWNDKPKIPKSHNRLRGELFLRVHMSRGSDKTR 1174
Query: 1297 FWNILIDKCLRVKDIIDWERSHPDELLDYSEAYGIDVAWQYFVNNLHCAISDTGKSILPE 1118
WN L+D CL + D+IDW RSHPD + + AYGID W++F+NNL A+SD GK++LPE
Sbjct: 1175 LWNQLMDDCLSIMDLIDWARSHPDNIHECCLAYGIDAGWKFFLNNLQSAMSDVGKTVLPE 1234
Query: 1117 HLVVTANCLSLTGEFMPLNARGLALQRKETNVCSPFSQACFLNPSDCFVKAAKLGQTDGL 938
HL++ ANCLS+TGEF+ LNA+GL QR+ +V +PF QACF NP DCF++AAK G D L
Sbjct: 1235 HLLLVANCLSVTGEFVGLNAKGLKRQREHASVSTPFVQACFSNPGDCFIRAAKAGVVDDL 1294
Query: 937 QGSLEALSWGQTPSIGSGCRFDILYNGKGHEPAGPADVYSLLSSHVGHAKSNP----AAE 770
QGS++AL+WG+ P+IG+G +FDI+Y+GKG E + P DVY+LL S + + N
Sbjct: 1295 QGSIDALAWGKVPAIGTG-QFDIVYSGKGLEFSKPVDVYNLLGSQMISTEQNTEFGVLDA 1353
Query: 769 QVFGKSITSLHF-------KTKGQKV---LLKRMISEHMSVIGIKQISQKLKRILKEYPI 620
Q++ F KG KV + + + ++ I+++S +++IL +Y +
Sbjct: 1354 QIYKSDKCGAQFLHKFGGCGPKGFKVKEGIPRSFLRRLLTYDDIQRMSYTVRKILNKYSV 1413
Query: 619 NRQLSGADKSAAETALKFHPRWNEKIGTGLLEIKVGRHPEHNE-NCFFLIRTDGTEEDFS 443
++QL+ +DKS L FHPR +EKIG G +IKV HPE+ + CF L+RTDGT EDFS
Sbjct: 1414 DQQLNESDKSVLMMTLYFHPRRDEKIGIGAKDIKVINHPEYQDTRCFSLVRTDGTIEDFS 1473
Query: 442 YHKCINHALEIIAPEMGKTYRSK 374
Y KC+++ALEIIAP+ K Y K
Sbjct: 1474 YRKCLHNALEIIAPQRAKRYCEK 1496
>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
Length = 1359
Score = 380 bits (977), Expect = e-103
Identities = 202/442 (45%), Positives = 273/442 (61%), Gaps = 15/442 (3%)
Frame = -2
Query: 1654 SVIDALYMNSNYSGVKSKITLPKLHITSNVCSEAAIRNESESTICISVALTQSLKEFSDL 1475
S+IDALYM N + +SKI LP L ITS C + E CI+V++ S K L
Sbjct: 913 SIIDALYMKCNSARAESKINLPDLQITSKDCF-VDMEKEDSDCFCITVSIVNSKKSCIQL 971
Query: 1474 EILRDLVKPVLLQTVIKGFQEFKKVDILWKDGPNSKSPRCPSGEMFLRVVMSEHCERTKF 1295
+ +RDLV P LL V+KG K D+L + SG ++LRV +S C + F
Sbjct: 972 DTVRDLVIPFLLGAVVKGCC-IKNSDVL----------KSSSGRLYLRVYVSGDCGKKNF 1020
Query: 1294 WNILIDKCLRVKDIIDWERSHPDELLDYSEAYGIDVAWQYFVNNLHCAISDTGKSILPEH 1115
W +L+D CL++ D+IDWERSHPD + D YGID W+YF+N+L AISD GK++LPEH
Sbjct: 1021 WGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEH 1080
Query: 1114 LVVTANCLSLTGEFMPLNARGLALQRKETNVCSPFSQACFLNPSDCFVKAAKLGQTDGLQ 935
L++ A+CLS TGEF+ LNA+G+A Q++ T++ SPF Q CF +P CF+KA K D L
Sbjct: 1081 LLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLH 1140
Query: 934 GSLEALSWGQTPSIGSGCRFDILYNGKGHEPAGPADVYSLLSSHVGHAKSN--------- 782
GSL+AL+WG+ PS+GSG FDILY+ KGHE A P D+Y LL S + N
Sbjct: 1141 GSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITC 1200
Query: 781 -----PAAEQVFGKSITSLHFKTKGQKVLLKRMISEHMSVIGIKQISQKLKRILKEYPIN 617
Q+ + S K + + K ++ +S+ I+++S++LK IL++YPIN
Sbjct: 1201 YQTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPIN 1260
Query: 616 RQLSGADKSAAETALKFHPRWNEKIGTGLLEIKVGRHPE-HNENCFFLIRTDGTEEDFSY 440
QLS DK+ AL FHPR +EKIG G IKV H + HN CF L+RTDGTEEDFSY
Sbjct: 1261 HQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSY 1320
Query: 439 HKCINHALEIIAPEMGKTYRSK 374
HKC++ ALEII P ++Y+S+
Sbjct: 1321 HKCVHGALEIIDPRRARSYQSR 1342