BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria22_contig00017786
         (1979 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519191.1| pentatricopeptide repeat-containing protein,...   742   0.0  
ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat...   684   0.0  
ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   669   0.0  
ref|NP_188314.1| pentatricopeptide repeat-containing protein [Ar...   667   0.0  
ref|XP_002885175.1| pentatricopeptide repeat-containing protein ...   647   0.0  

>ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223541506|gb|EEF43055.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 719

 Score =  742 bits (1915), Expect = 0.0
 Identities = 367/647 (56%), Positives = 472/647 (72%)
 Frame = +3

Query: 39   SLASRVLPEFQNLAEKLNCYTKPRNSRPSNVKSRENRGQNPISSSTGELEFKSPNFLSIS 218
            S +S  L +   L E  N +   +N      K+  + G N  +      +F +PN L IS
Sbjct: 13   SSSSTALKKSSQLQESDNHFKSAQNHIS---KTEASLGGNSDTHYLLNPQFTNPNSLKIS 69

Query: 219  AHKSHISVCEQSFNSKPIDHHYLAEILSRKDWFLLLNHEFKAQKSNLSAQIVVSILQNQE 398
               + IS  + S   KPIDHHY + ILSR DWFLLLNHEFKA++  L++  V S+LQNQE
Sbjct: 70   --NNPISANKYS---KPIDHHYFSRILSRHDWFLLLNHEFKAKRITLNSHSVASVLQNQE 124

Query: 399  NVLCTVRFYVWTSNIDALIVKNQSIRSALSKALYRKGPVLLSAELIQDIKNSGCRVSEEL 578
            N L  ++FY+W SN+D L  K+QS++  L+  LYRKGPV+LS EL++DIK SG R++EEL
Sbjct: 125  NPLYPLKFYIWVSNMDPLFAKDQSVKGVLANCLYRKGPVVLSVELLKDIKASGYRINEEL 184

Query: 579  LCVLIGSWGRLGLAQYCSEVFEQVSYLGIGPSTRLYNAVIDGLVKSNSLDLAYLKFQQME 758
            LC+LIGSWGRLGLA+YC E+F Q+S+LGI PSTRLYNAVID LVKSNSLDLAYLKFQQM 
Sbjct: 185  LCILIGSWGRLGLAKYCDEIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMS 244

Query: 759  VDNCIPDRFTYNILIHGVCKAGVVDEALRLLKQMEGLGYSPNVFTYTILVDGYFNAKRID 938
             DNC PDRFTYNILIHGVC++GVVDEALRL+KQMEGLGYSPNVFTYTIL+DG+FNAK++D
Sbjct: 245  ADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVD 304

Query: 939  EAFRLLERMKARNIKPNDATYRSLINGVFRSVPSNEAFGLLLGWVNSEPNLPKVVYDSMI 1118
            EAFR+LE MKAR + P++AT RS I+GVFR V  N+AF L + ++  EP L ++  D+++
Sbjct: 305  EAFRVLETMKARKVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLL 364

Query: 1119 YCLCDNSLSKHTAEFFRTASERGYVPDSLMSNIALTCLIKGFDLEESCQMFEYFIKRGVK 1298
             CL   ++++      +   + G+ PDS   NIA+ CLIKGFDL E C + + F+++G+K
Sbjct: 365  CCLSSKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMK 424

Query: 1299 VDLSTCLALVEALYKSMREGKGNQYLRWVFHEGLVSNVFSYNMVIDCFCKAKMMDRAIET 1478
               ST LAL++ALY + +  +GN Y   +  +GL+ NV SYNMVIDCFCK  MMD+A  T
Sbjct: 425  FGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNT 484

Query: 1479 LGMMSKGGILPNLVTFNTLIAGYCKCRDALKAREMLLMLLDHGFRPDVVTFSSIIDGLCQ 1658
               M   GI PNLVTFNTLI GYCK  +  K+R++L+MLL+HGF+PD+ TFSSIIDGLC+
Sbjct: 485  FKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCR 544

Query: 1659 VNQTVDAFDCFLEMVEWGIIPNAITYNSLIRSLCISGDVLKAMKLLRKMQIDGIEPDVYT 1838
              Q  DA  CF EMV WG+ PNA+TYN LI SLCI GDV ++MKLLRKMQ DGI PDV++
Sbjct: 545  AKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFS 604

Query: 1839 FNALIQKYCKDQKIGKAQRLLKSMLAMNLRPDNFTYIAFVNAMCESG 1979
            FNALIQ +C+  K+  A++L  SML++ L PDN+TY+AF+   C+SG
Sbjct: 605  FNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSG 651



 Score = 94.0 bits (232), Expect = 1e-16
 Identities = 66/277 (23%), Positives = 118/277 (42%)
 Frame = +3

Query: 480  ALSKALYRKGPVLLSAELIQDIKNSGCRVSEELLCVLIGSWGRLGLAQYCSEVFEQVSYL 659
            AL KALY  G V         +   G   +     ++I  + +  +    +  F+++ Y 
Sbjct: 432  ALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYK 491

Query: 660  GIGPSTRLYNAVIDGLVKSNSLDLAYLKFQQMEVDNCIPDRFTYNILIHGVCKAGVVDEA 839
            GI P+   +N +IDG  K   +  +      +      PD FT++ +I G+C+A  +++A
Sbjct: 492  GIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDA 551

Query: 840  LRLLKQMEGLGYSPNVFTYTILVDGYFNAKRIDEAFRLLERMKARNIKPNDATYRSLING 1019
            L    +M   G SPN  TY IL+        +  + +LL +M+   I P+  ++ +LI  
Sbjct: 552  LGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQS 611

Query: 1020 VFRSVPSNEAFGLLLGWVNSEPNLPKVVYDSMIYCLCDNSLSKHTAEFFRTASERGYVPD 1199
              R     +A  L    ++         Y + I   C +       E F +    G +PD
Sbjct: 612  FCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGCMPD 671

Query: 1200 SLMSNIALTCLIKGFDLEESCQMFEYFIKRGVKVDLS 1310
            S   NI L  L+K    E + ++ +   + G+ V+ +
Sbjct: 672  SFTCNIILDALVKQDQFEAAQKIAKTCSEWGILVNFA 708


>ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g16890, mitochondrial-like [Cucumis sativus]
          Length = 697

 Score =  684 bits (1764), Expect = 0.0
 Identities = 348/667 (52%), Positives = 467/667 (70%), Gaps = 15/667 (2%)
 Frame = +3

Query: 24   MRKLSSLASRVLPEFQNLAEKLNCYT---KPRNSRPSNVKSRENRGQNPISS-------- 170
            MR   S A R  P  +N    L  YT   K R   PSN   R ++ Q+P ++        
Sbjct: 1    MRGFPSSAFRATPVLRN--RPLQAYTPINKHRRQLPSNSIQRTSK-QSPFNNLEAPSRGN 57

Query: 171  -STGELEFKSPNFLSISAHKSHISVCEQSFNSKPIDHHYLAEILSRKDWFLLLNHEFKAQ 347
             S      K+P+ + +S   S ++  + S + KPID  Y+++IL  KDWFLLLNHEFKA+
Sbjct: 58   PSPLTTPLKAPSSIQLSTPPS-LADDKHSLSLKPIDRSYISKILLSKDWFLLLNHEFKAK 116

Query: 348  KSNLSAQIVVSILQNQENVLCTVRFYVWTSNIDALIVKNQSIRSALSKALYRKGP---VL 518
            +  LS Q VVSILQNQ+N L  +RFY+W SN+D L+VK Q I+  L + L+R+GP   VL
Sbjct: 117  RVVLSPQFVVSILQNQDNPLSAIRFYIWVSNVDPLLVKKQLIQGVLVRNLHREGPDRPVL 176

Query: 519  LSAELIQDIKNSGCRVSEELLCVLIGSWGRLGLAQYCSEVFEQVSYLGIGPSTRLYNAVI 698
            LS +L+Q IK SG +V+EELLC+L GSWGRLGLA YC EVF Q+  LG+ P+TRLYNAV+
Sbjct: 177  LSVDLLQQIKESGLKVTEELLCILFGSWGRLGLANYCVEVFGQIGLLGLNPTTRLYNAVM 236

Query: 699  DGLVKSNSLDLAYLKFQQMEVDNCIPDRFTYNILIHGVCKAGVVDEALRLLKQMEGLGYS 878
            D L+KSNSLDLAYLKFQQM   NC+PDRFTYNILIHGVC+ GVVDEALRL+KQMEGLGY 
Sbjct: 237  DALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYF 296

Query: 879  PNVFTYTILVDGYFNAKRIDEAFRLLERMKARNIKPNDATYRSLINGVFRSVPSNEAFGL 1058
            PNVFTYTIL+DG+FNAKR  EAF++L+ MK RN+ PN+AT RSL++GVFR +  ++AF L
Sbjct: 297  PNVFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVPNEATMRSLVHGVFRCIAPDKAFEL 356

Query: 1059 LLGWVNSEPNLPKVVYDSMIYCLCDNSLSKHTAEFFRTASERGYVPDSLMSNIALTCLIK 1238
            LL +V  +  + ++V D+++YCL +NS++     F     + GYVP S   NI L C++K
Sbjct: 357  LLEFVERKQGITQLVCDNILYCLSNNSMASEAVMFLIKTGKEGYVPSSSTFNITLACVLK 416

Query: 1239 GFDLEESCQMFEYFIKRGVKVDLSTCLALVEALYKSMREGKGNQYLRWVFHEGLVSNVFS 1418
              DL+ +C +F+  ++ GVK   ST L L+EALYK+ +   GN+Y+  + ++GL+SN++S
Sbjct: 417  KLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIYS 476

Query: 1419 YNMVIDCFCKAKMMDRAIETLGMMSKGGILPNLVTFNTLIAGYCKCRDALKAREMLLMLL 1598
            YNMVIDC CK K MDRA E    +   GI PN+VT+NTLI G+C+  +  KA+E+L MLL
Sbjct: 477  YNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLL 536

Query: 1599 DHGFRPDVVTFSSIIDGLCQVNQTVDAFDCFLEMVEWGIIPNAITYNSLIRSLCISGDVL 1778
            +  FRPD+ TF+S+IDGLCQ ++  +AF CF EMVEW + PN ITYN LI S C  GDV 
Sbjct: 537  ESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVS 596

Query: 1779 KAMKLLRKMQIDGIEPDVYTFNALIQKYCKDQKIGKAQRLLKSMLAMNLRPDNFTYIAFV 1958
            ++  LLR+M++ GI+PD ++FNALIQ Y    +  KA++L  SML + ++PDN+TY A +
Sbjct: 597  RSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALI 656

Query: 1959 NAMCESG 1979
             ++C+SG
Sbjct: 657  KSLCKSG 663



 Score =  102 bits (253), Expect = 5e-19
 Identities = 71/291 (24%), Positives = 134/291 (46%), Gaps = 4/291 (1%)
 Frame = +3

Query: 576  LLCVLIGSWGRLGLAQYCSEVFEQVSYLGIGPSTRLYNAVIDGLVKSNSLDLAYLKFQQM 755
            L CVL     +L L   C+ VF+     G+ P    Y  +I+ L K+  +++      ++
Sbjct: 411  LACVL----KKLDLKVTCT-VFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRL 465

Query: 756  EVDNCIPDRFTYNILIHGVCKAGVVDEALRLLKQMEGLGYSPNVFTYTILVDGYFNAKRI 935
              D  I + ++YN++I  +CK   +D A  + + +   G SPN+ TY  L+ G+     +
Sbjct: 466  INDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNM 525

Query: 936  DEAFRLLERMKARNIKPNDATYRSLINGVFRSVPSNEAFGLLLGWVNSEPNLPKVVYDSM 1115
            D+A  LLE +     +P+  T+ SLI+G+ ++     AFG     V  +     + Y+ +
Sbjct: 526  DKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNIL 585

Query: 1116 IYCLCDNSLSKHTAEFFRTASERGYVPDSLMSNIALTCLIKGFD----LEESCQMFEYFI 1283
            I   C       +    R     G  PD+   N     LI+G+      +++ ++F+  +
Sbjct: 586  ICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFN----ALIQGYTGKNRFQKAEKLFDSML 641

Query: 1284 KRGVKVDLSTCLALVEALYKSMREGKGNQYLRWVFHEGLVSNVFSYNMVID 1436
            + G++ D  T  AL+++L KS R  K  +    +   G   + ++ ++  D
Sbjct: 642  RLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSD 692



 Score = 86.3 bits (212), Expect = 3e-14
 Identities = 53/181 (29%), Positives = 92/181 (50%)
 Frame = +3

Query: 522  SAELIQDIKNSGCRVSEELLCVLIGSWGRLGLAQYCSEVFEQVSYLGIGPSTRLYNAVID 701
            ++E+ +D+ N G   +      LIG + R G      E+ E +      P    +N++ID
Sbjct: 493  ASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLID 552

Query: 702  GLVKSNSLDLAYLKFQQMEVDNCIPDRFTYNILIHGVCKAGVVDEALRLLKQMEGLGYSP 881
            GL +++  + A+  F +M   +  P+  TYNILI   C  G V  +  LL+QM+  G  P
Sbjct: 553  GLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQP 612

Query: 882  NVFTYTILVDGYFNAKRIDEAFRLLERMKARNIKPNDATYRSLINGVFRSVPSNEAFGLL 1061
            + F++  L+ GY    R  +A +L + M    I+P++ TY +LI  + +S   ++A  + 
Sbjct: 613  DTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIF 672

Query: 1062 L 1064
            L
Sbjct: 673  L 673


>ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g16890, mitochondrial-like
            [Cucumis sativus]
          Length = 688

 Score =  669 bits (1725), Expect = 0.0
 Identities = 344/667 (51%), Positives = 462/667 (69%), Gaps = 15/667 (2%)
 Frame = +3

Query: 24   MRKLSSLASRVLPEFQNLAEKLNCYT---KPRNSRPSNVKSRENRGQNPISS-------- 170
            MR   S A R  P  +N    L  YT   K R   PSN   R ++ Q+P ++        
Sbjct: 1    MRGFPSSAFRATPVLRN--RPLQAYTPINKHRRQLPSNSIQRTSK-QSPFNNLEAPSRGN 57

Query: 171  -STGELEFKSPNFLSISAHKSHISVCEQSFNSKPIDHHYLAEILSRKDWFLLLNHEFKAQ 347
             S      K+P+ + +S   S ++  + S + KPID  Y+++IL  KDWFLLLNHEFKA+
Sbjct: 58   PSPLTTPLKAPSSIQLSTPPS-LADDKHSLSLKPIDRSYISKILLSKDWFLLLNHEFKAK 116

Query: 348  KSNLSAQIVVSILQNQENVLCTVRFYVWTSNIDALIVKNQSIRSALSKALYRKGP---VL 518
            +  LS Q VVSILQNQ+N L  +RFY+W SN+D L+VK Q I+  L + L+R+GP   VL
Sbjct: 117  RVVLSPQFVVSILQNQDNPLSAIRFYIWVSNVDPLLVKKQLIQGVLVRNLHREGPDRPVL 176

Query: 519  LSAELIQDIKNSGCRVSEELLCVLIGSWGRLGLAQYCSEVFEQVSYLGIGPSTRLYNAVI 698
            LS +L+Q IK SG +V+EELLC+L GSWGRLGLA YC EVF Q+  LG+ P+TRLYNAV+
Sbjct: 177  LSVDLLQQIKESGLKVTEELLCILFGSWGRLGLANYCVEVFGQIGLLGLNPTTRLYNAVM 236

Query: 699  DGLVKSNSLDLAYLKFQQMEVDNCIPDRFTYNILIHGVCKAGVVDEALRLLKQMEGLGYS 878
            D L+KSNSLDLAYLKFQQM   NC+PDRFTYNILIHGVC+ GVVDEALRL+KQMEGLGY 
Sbjct: 237  DALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYF 296

Query: 879  PNVFTYTILVDGYFNAKRIDEAFRLLERMKARNIKPNDATYRSLINGVFRSVPSNEAFGL 1058
            PNVFTYTIL+DG+FNAKR  E F++L+ MK RN+ PN+AT RSL++GVFR +  ++AF L
Sbjct: 297  PNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATMRSLVHGVFRCIAPDKAFEL 356

Query: 1059 LLGWVNSEPNLPKVVYDSMIYCLCDNSLSKHTAEFFRTASERGYVPDSLMSNIALTCLIK 1238
            LL +V  +  + ++V D+++YCL +NS++     F          P S   NI L C++K
Sbjct: 357  LLEFVERKQGITQLVCDNILYCLSNNSMASEAVMF---------XPSSSTFNITLACVLK 407

Query: 1239 GFDLEESCQMFEYFIKRGVKVDLSTCLALVEALYKSMREGKGNQYLRWVFHEGLVSNVFS 1418
              DL+ +C +F+  ++ GVK   ST L L+EALYK+ +   GN+Y+  + ++GL+SN++S
Sbjct: 408  KLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIYS 467

Query: 1419 YNMVIDCFCKAKMMDRAIETLGMMSKGGILPNLVTFNTLIAGYCKCRDALKAREMLLMLL 1598
            YNMVIDC CK K MDRA E    +   GI PN+VT+NTLI G+C+  +  KA+E+L MLL
Sbjct: 468  YNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLL 527

Query: 1599 DHGFRPDVVTFSSIIDGLCQVNQTVDAFDCFLEMVEWGIIPNAITYNSLIRSLCISGDVL 1778
            +  FRPD+ TF+S+IDGLCQ ++  +AF CF EMVEW + PN ITYN LI S C  GDV 
Sbjct: 528  ESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVS 587

Query: 1779 KAMKLLRKMQIDGIEPDVYTFNALIQKYCKDQKIGKAQRLLKSMLAMNLRPDNFTYIAFV 1958
            ++  LLR+M++ GI+PD ++FNALIQ Y    +  KA++L  SML + ++PDN+TY A +
Sbjct: 588  RSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALI 647

Query: 1959 NAMCESG 1979
             ++C+SG
Sbjct: 648  KSLCKSG 654



 Score =  102 bits (253), Expect = 5e-19
 Identities = 71/291 (24%), Positives = 134/291 (46%), Gaps = 4/291 (1%)
 Frame = +3

Query: 576  LLCVLIGSWGRLGLAQYCSEVFEQVSYLGIGPSTRLYNAVIDGLVKSNSLDLAYLKFQQM 755
            L CVL     +L L   C+ VF+     G+ P    Y  +I+ L K+  +++      ++
Sbjct: 402  LACVL----KKLDLKVTCT-VFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRL 456

Query: 756  EVDNCIPDRFTYNILIHGVCKAGVVDEALRLLKQMEGLGYSPNVFTYTILVDGYFNAKRI 935
              D  I + ++YN++I  +CK   +D A  + + +   G SPN+ TY  L+ G+     +
Sbjct: 457  INDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNM 516

Query: 936  DEAFRLLERMKARNIKPNDATYRSLINGVFRSVPSNEAFGLLLGWVNSEPNLPKVVYDSM 1115
            D+A  LLE +     +P+  T+ SLI+G+ ++     AFG     V  +     + Y+ +
Sbjct: 517  DKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNIL 576

Query: 1116 IYCLCDNSLSKHTAEFFRTASERGYVPDSLMSNIALTCLIKGFD----LEESCQMFEYFI 1283
            I   C       +    R     G  PD+   N     LI+G+      +++ ++F+  +
Sbjct: 577  ICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFN----ALIQGYTGKNRFQKAEKLFDSML 632

Query: 1284 KRGVKVDLSTCLALVEALYKSMREGKGNQYLRWVFHEGLVSNVFSYNMVID 1436
            + G++ D  T  AL+++L KS R  K  +    +   G   + ++ ++  D
Sbjct: 633  RLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSD 683



 Score = 95.9 bits (237), Expect = 4e-17
 Identities = 91/453 (20%), Positives = 168/453 (37%), Gaps = 61/453 (13%)
 Frame = +3

Query: 477  SALSKALYRKGPVLLSAELIQDIKNSGCRVSEELLCVLIGSWGRLGLAQYCSEVFEQVSY 656
            +A+  AL +   + L+    Q + +  C        +LI    RLG+      + +Q+  
Sbjct: 233  NAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQMEG 292

Query: 657  LGIGPSTRLYNAVIDGLVKSNSLDLAYLKFQQMEVDNCIPDRFTYNILIHGVCKAGVVDE 836
            LG  P+   Y  +IDG   +      +   Q M+  N +P+  T   L+HGV +    D+
Sbjct: 293  LGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATMRSLVHGVFRCIAPDK 352

Query: 837  ALRLLKQM--------------------------EGLGYSPNVFTYTILVDGYFNAKRID 938
            A  LL +                           E + + P+  T+ I +        + 
Sbjct: 353  AFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVMFXPSSSTFNITLACVLKKLDLK 412

Query: 939  EAFRLLERMKARNIKPNDATYRSLINGVFRSVPSNEAFGLLLGWVNSEPNLPKVVYDSMI 1118
                + +      +KP  +TY +LI  ++++         +   +N         Y+ +I
Sbjct: 413  VTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIYSYNMVI 472

Query: 1119 YCLCDNSLSKHTAEFFRTASERGYVPDSLMSNIALTCLIKGFDLEESCQMFEYFIKRGVK 1298
             CLC        +E FR    RG  P+ +  N  +    +  +++++ ++ E  ++   +
Sbjct: 473  DCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFR 532

Query: 1299 VDLSTCLALVEALYKSMREGKGNQYLRWVFHEGLVSNVFSYNMVIDCFCKAKMMDRAIET 1478
             D+ T  +L++ L ++ +          +    +  NV +YN++I  FC    + R+   
Sbjct: 533  PDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHL 592

Query: 1479 LGMMSKGGILPNLVTFNTLI-----------------------------------AGYCK 1553
            L  M   GI P+  +FN LI                                      CK
Sbjct: 593  LRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCK 652

Query: 1554 CRDALKAREMLLMLLDHGFRPDVVTFSSIIDGL 1652
                 KARE+ L + ++G  PD  T S   D L
Sbjct: 653  SGRHDKAREIFLSMKENGCTPDSYTCSLFSDTL 685


>ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName:
            Full=Putative pentatricopeptide repeat-containing protein
            At3g16890, mitochondrial; AltName: Full=Protein
            PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
            gi|7670019|dbj|BAA94973.1| salt-inducible protein-like
            [Arabidopsis thaliana] gi|332642359|gb|AEE75880.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 659

 Score =  667 bits (1720), Expect = 0.0
 Identities = 314/573 (54%), Positives = 431/573 (75%)
 Frame = +3

Query: 261  SKPIDHHYLAEILSRKDWFLLLNHEFKAQKSNLSAQIVVSILQNQENVLCTVRFYVWTSN 440
            + P++  Y+++++ RKDWFL+LN EF   +  L+ + V+S+LQNQ+N L ++RFY+W SN
Sbjct: 42   TNPLNQRYISQVIERKDWFLILNQEFTTHRIGLNTRFVISVLQNQDNPLHSLRFYLWVSN 101

Query: 441  IDALIVKNQSIRSALSKALYRKGPVLLSAELIQDIKNSGCRVSEELLCVLIGSWGRLGLA 620
             D +  K+QS++S L  AL+RKGP+LLS EL+++I++SG R+S+EL+CVLIGSWGRLGLA
Sbjct: 102  FDPVYAKDQSLKSVLGNALFRKGPLLLSMELLKEIRDSGYRISDELMCVLIGSWGRLGLA 161

Query: 621  QYCSEVFEQVSYLGIGPSTRLYNAVIDGLVKSNSLDLAYLKFQQMEVDNCIPDRFTYNIL 800
            +YC++VF Q+S+LG+ PSTRLYNAVID LVKSNSLDLAYLKFQQM  D C PDRFTYNIL
Sbjct: 162  KYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNIL 221

Query: 801  IHGVCKAGVVDEALRLLKQMEGLGYSPNVFTYTILVDGYFNAKRIDEAFRLLERMKARNI 980
            IHGVCK GVVDEA+RL+KQME  G  PNVFTYTIL+DG+  A R+DEA + LE M+ R +
Sbjct: 222  IHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKL 281

Query: 981  KPNDATYRSLINGVFRSVPSNEAFGLLLGWVNSEPNLPKVVYDSMIYCLCDNSLSKHTAE 1160
             PN+AT R+ ++G+FR +P  +AF +L+G++  + NL +V YD+++YCL +NS++K T +
Sbjct: 282  NPNEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQ 341

Query: 1161 FFRTASERGYVPDSLMSNIALTCLIKGFDLEESCQMFEYFIKRGVKVDLSTCLALVEALY 1340
            F R   ERGY+PDS   N A++CL+KG DL E+C++F+ F+ RGVK   +  L LV+AL 
Sbjct: 342  FLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALL 401

Query: 1341 KSMREGKGNQYLRWVFHEGLVSNVFSYNMVIDCFCKAKMMDRAIETLGMMSKGGILPNLV 1520
             + R  +G++YL+ +  +GL+S+V+SYN VIDC CKA+ ++ A   L  M   GI PNLV
Sbjct: 402  NAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLV 461

Query: 1521 TFNTLIAGYCKCRDALKAREMLLMLLDHGFRPDVVTFSSIIDGLCQVNQTVDAFDCFLEM 1700
            TFNT ++GY    D  K   +L  LL HGF+PDV+TFS II+ LC+  +  DAFDCF EM
Sbjct: 462  TFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEM 521

Query: 1701 VEWGIIPNAITYNSLIRSLCISGDVLKAMKLLRKMQIDGIEPDVYTFNALIQKYCKDQKI 1880
            +EWGI PN ITYN LIRS C +GD  +++KL  KM+ +G+ PD+Y +NA IQ +CK +K+
Sbjct: 522  LEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKV 581

Query: 1881 GKAQRLLKSMLAMNLRPDNFTYIAFVNAMCESG 1979
             KA+ LLK+ML + L+PDNFTY   + A+ ESG
Sbjct: 582  KKAEELLKTMLRIGLKPDNFTYSTLIKALSESG 614



 Score =  124 bits (312), Expect = 7e-26
 Identities = 98/455 (21%), Positives = 189/455 (41%), Gaps = 36/455 (7%)
 Frame = +3

Query: 477  SALSKALYRKGPVLLSAELIQDIKNSGCRVSEELLCVLIGSWGRLGLAQYCSEVFEQVSY 656
            +A+  AL +   + L+    Q +++ GC+       +LI    + G+      + +Q+  
Sbjct: 184  NAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQ 243

Query: 657  LGIGPSTRLYNAVIDGLVKSNSLDLAYLKFQQMEVDNCIPDRFTYNILIHGV------CK 818
             G  P+   Y  +IDG + +  +D A  + + M V    P+  T    +HG+      CK
Sbjct: 244  EGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNEATIRTFVHGIFRCLPPCK 303

Query: 819  A-----------------------------GVVDEALRLLKQMEGLGYSPNVFTYTILVD 911
            A                              +  E  + L+++   GY P+  T+   + 
Sbjct: 304  AFEVLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMS 363

Query: 912  GYFNAKRIDEAFRLLERMKARNIKPNDATYRSLINGVFRSVPSNEAFGLLLGWVNSEPNL 1091
                   + E  R+ +   +R +KP    Y  L+  +  +   +E     L  +  +  L
Sbjct: 364  CLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFSEG-DRYLKQMGVDGLL 422

Query: 1092 PKVV-YDSMIYCLCDNSLSKHTAEFFRTASERGYVPDSLMSNIALTCLIKGFDLEESCQM 1268
              V  Y+++I CLC     ++ A F     +RG  P+ +  N  L+      D+++   +
Sbjct: 423  SSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGV 482

Query: 1269 FEYFIKRGVKVDLSTCLALVEALYKSMREGKGNQYLRWVFHEGLVSNVFSYNMVIDCFCK 1448
             E  +  G K D+ T   ++  L ++          + +   G+  N  +YN++I   C 
Sbjct: 483  LEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCS 542

Query: 1449 AKMMDRAIETLGMMSKGGILPNLVTFNTLIAGYCKCRDALKAREMLLMLLDHGFRPDVVT 1628
                DR+++    M + G+ P+L  +N  I  +CK R   KA E+L  +L  G +PD  T
Sbjct: 543  TGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFT 602

Query: 1629 FSSIIDGLCQVNQTVDAFDCFLEMVEWGIIPNAIT 1733
            +S++I  L +  +  +A + F  +   G +P++ T
Sbjct: 603  YSTLIKALSESGRESEAREMFSSIERHGCVPDSYT 637



 Score = 60.1 bits (144), Expect = 2e-06
 Identities = 35/124 (28%), Positives = 57/124 (45%)
 Frame = +3

Query: 633  EVFEQVSYLGIGPSTRLYNAVIDGLVKSNSLDLAYLKFQQMEVDNCIPDRFTYNILIHGV 812
            + F+++   GI P+   YN +I     +   D +   F +M+ +   PD + YN  I   
Sbjct: 516  DCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSF 575

Query: 813  CKAGVVDEALRLLKQMEGLGYSPNVFTYTILVDGYFNAKRIDEAFRLLERMKARNIKPND 992
            CK   V +A  LLK M  +G  P+ FTY+ L+     + R  EA  +   ++     P+ 
Sbjct: 576  CKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDS 635

Query: 993  ATYR 1004
             T R
Sbjct: 636  YTKR 639


>ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297331015|gb|EFH61434.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 653

 Score =  647 bits (1669), Expect = 0.0
 Identities = 306/573 (53%), Positives = 422/573 (73%)
 Frame = +3

Query: 261  SKPIDHHYLAEILSRKDWFLLLNHEFKAQKSNLSAQIVVSILQNQENVLCTVRFYVWTSN 440
            + P++  Y+++++ RKDWFL+LN EF   +  L+ + V+S+LQNQ+N L ++RFY+W SN
Sbjct: 36   TNPLNQRYISQVIERKDWFLILNQEFTTHRIGLNIRFVISVLQNQDNPLHSLRFYLWVSN 95

Query: 441  IDALIVKNQSIRSALSKALYRKGPVLLSAELIQDIKNSGCRVSEELLCVLIGSWGRLGLA 620
             D +  K+QS++S L  AL+RKGP+LLS EL+++I+ SG R+++EL+CVLIGSWGRLGLA
Sbjct: 96   TDPVYAKDQSLKSVLGNALFRKGPLLLSMELLKEIRESGYRITDELMCVLIGSWGRLGLA 155

Query: 621  QYCSEVFEQVSYLGIGPSTRLYNAVIDGLVKSNSLDLAYLKFQQMEVDNCIPDRFTYNIL 800
            +YC++VF Q+S+LG+ PSTRLYNAVID LVKSNSL+LAY+KFQQM  D+C PDRFTYNIL
Sbjct: 156  KYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLNLAYVKFQQMRSDDCKPDRFTYNIL 215

Query: 801  IHGVCKAGVVDEALRLLKQMEGLGYSPNVFTYTILVDGYFNAKRIDEAFRLLERMKARNI 980
            IHGVCK GVVDEA+RL+KQME  G  PNVFTYTIL+DG+  A RI+EA + LE M+ R +
Sbjct: 216  IHGVCKKGVVDEAIRLVKQMEREGNRPNVFTYTILIDGFLIAGRIEEALKQLEMMQVRKL 275

Query: 981  KPNDATYRSLINGVFRSVPSNEAFGLLLGWVNSEPNLPKVVYDSMIYCLCDNSLSKHTAE 1160
             PN+AT R+L++G+FR +P  EAF +LLG++     L +V YD+++YCL +NS++K TA 
Sbjct: 276  NPNEATIRTLVHGIFRCLPPCEAFEVLLGFMEKNSILQRVAYDTVLYCLSNNSMAKETAL 335

Query: 1161 FFRTASERGYVPDSLMSNIALTCLIKGFDLEESCQMFEYFIKRGVKVDLSTCLALVEALY 1340
            F R   ERGY+PDS   N A+ CL+KG  L E+C +F+ F+ RG K   +  L LV+AL 
Sbjct: 336  FLRKTGERGYIPDSSTFNAAMNCLLKGHHLVETCGIFDCFVSRGAKPGFNGYLVLVQALL 395

Query: 1341 KSMREGKGNQYLRWVFHEGLVSNVFSYNMVIDCFCKAKMMDRAIETLGMMSKGGILPNLV 1520
             + R   G++YL+ +  +GL+S+V++YN VIDC CKA+  + A   L  M   GI PNL+
Sbjct: 396  NAQRFSAGDRYLKQMGGDGLLSSVYTYNAVIDCLCKARRTEHAAMFLTEMQDRGISPNLI 455

Query: 1521 TFNTLIAGYCKCRDALKAREMLLMLLDHGFRPDVVTFSSIIDGLCQVNQTVDAFDCFLEM 1700
            TFNT ++GY    D  K   ++  LL+HG  PDV+TFS II+ LC+  +  DAFDCF EM
Sbjct: 456  TFNTFLSGYSAGGDVKKVHGVVEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEM 515

Query: 1701 VEWGIIPNAITYNSLIRSLCISGDVLKAMKLLRKMQIDGIEPDVYTFNALIQKYCKDQKI 1880
            +EWGI PN ITYN LIRS C +GD  +++KL   M+  G+ P++Y +NA+IQ +CK +K+
Sbjct: 516  LEWGIKPNEITYNILIRSSCSTGDTGRSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKV 575

Query: 1881 GKAQRLLKSMLAMNLRPDNFTYIAFVNAMCESG 1979
             KA+ LLK+ML + L+PDNFTY   + A+ ESG
Sbjct: 576  KKAEELLKTMLRIGLKPDNFTYSTLIKALSESG 608



 Score =  124 bits (311), Expect = 9e-26
 Identities = 96/455 (21%), Positives = 189/455 (41%), Gaps = 36/455 (7%)
 Frame = +3

Query: 477  SALSKALYRKGPVLLSAELIQDIKNSGCRVSEELLCVLIGSWGRLGLAQYCSEVFEQVSY 656
            +A+  AL +   + L+    Q +++  C+       +LI    + G+      + +Q+  
Sbjct: 178  NAVIDALVKSNSLNLAYVKFQQMRSDDCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMER 237

Query: 657  LGIGPSTRLYNAVIDGLVKSNSLDLAYLKFQQMEVDNCIPDRFTYNILIHGV------CK 818
             G  P+   Y  +IDG + +  ++ A  + + M+V    P+  T   L+HG+      C+
Sbjct: 238  EGNRPNVFTYTILIDGFLIAGRIEEALKQLEMMQVRKLNPNEATIRTLVHGIFRCLPPCE 297

Query: 819  A-----------------------------GVVDEALRLLKQMEGLGYSPNVFTYTILVD 911
            A                              +  E    L++    GY P+  T+   ++
Sbjct: 298  AFEVLLGFMEKNSILQRVAYDTVLYCLSNNSMAKETALFLRKTGERGYIPDSSTFNAAMN 357

Query: 912  GYFNAKRIDEAFRLLERMKARNIKPNDATYRSLINGVFRSVPSNEAFGLLLGWVNSEPNL 1091
                   + E   + +   +R  KP    Y  L+  +  +   + A    L  +  +  L
Sbjct: 358  CLLKGHHLVETCGIFDCFVSRGAKPGFNGYLVLVQALLNAQRFS-AGDRYLKQMGGDGLL 416

Query: 1092 PKV-VYDSMIYCLCDNSLSKHTAEFFRTASERGYVPDSLMSNIALTCLIKGFDLEESCQM 1268
              V  Y+++I CLC    ++H A F     +RG  P+ +  N  L+    G D+++   +
Sbjct: 417  SSVYTYNAVIDCLCKARRTEHAAMFLTEMQDRGISPNLITFNTFLSGYSAGGDVKKVHGV 476

Query: 1269 FEYFIKRGVKVDLSTCLALVEALYKSMREGKGNQYLRWVFHEGLVSNVFSYNMVIDCFCK 1448
             E  ++ G   D+ T   ++  L ++          + +   G+  N  +YN++I   C 
Sbjct: 477  VEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITYNILIRSSCS 536

Query: 1449 AKMMDRAIETLGMMSKGGILPNLVTFNTLIAGYCKCRDALKAREMLLMLLDHGFRPDVVT 1628
                 R+++    M + G+ PNL  +N +I  +CK +   KA E+L  +L  G +PD  T
Sbjct: 537  TGDTGRSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLRIGLKPDNFT 596

Query: 1629 FSSIIDGLCQVNQTVDAFDCFLEMVEWGIIPNAIT 1733
            +S++I  L +  +  +A + F  M   G +P++ T
Sbjct: 597  YSTLIKALSESGRESEAREMFSSMERHGCVPDSYT 631



 Score = 58.9 bits (141), Expect = 5e-06
 Identities = 38/158 (24%), Positives = 66/158 (41%)
 Frame = +3

Query: 531  LIQDIKNSGCRVSEELLCVLIGSWGRLGLAQYCSEVFEQVSYLGIGPSTRLYNAVIDGLV 710
            +++ +   GC        ++I    R    +   + F+++   GI P+   YN +I    
Sbjct: 476  VVEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITYNILIRSSC 535

Query: 711  KSNSLDLAYLKFQQMEVDNCIPDRFTYNILIHGVCKAGVVDEALRLLKQMEGLGYSPNVF 890
             +     +   F  M+     P+ + YN +I   CK   V +A  LLK M  +G  P+ F
Sbjct: 536  STGDTGRSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLRIGLKPDNF 595

Query: 891  TYTILVDGYFNAKRIDEAFRLLERMKARNIKPNDATYR 1004
            TY+ L+     + R  EA  +   M+     P+  T R
Sbjct: 596  TYSTLIKALSESGRESEAREMFSSMERHGCVPDSYTKR 633